Merge branch 'remove_jupyter_notebooks' into 'master'

Remove remaining jupyter notebooks

See merge request ogs/ogs!5168

ProcessLib/ComponentTransport/Tests.cmake

@@ -864,7 +864,7 @@ endif()
 
 if(NOT OGS_USE_PETSC AND NOT WIN32)
     NotebookTest(
-        NOTEBOOKFILE Parabolic/ComponentTransport/ReactiveTransport/DecayChain/GlobalImplicitApproach/performance_measurements.ipynb
+        NOTEBOOKFILE Parabolic/ComponentTransport/ReactiveTransport/DecayChain/GlobalImplicitApproach/performance_measurements.py
         RUNTIME 200
         SKIP_WEB
     )

ProcessLib/SteadyStateDiffusion/Tests.cmake

@@ -1051,7 +1051,7 @@ if(OGS_USE_MPI)
     NotebookTest(NOTEBOOKFILE Notebooks/SimplePETSc.py RUNTIME 10)
 else()
     NotebookTest(
-        NOTEBOOKFILE Elliptic/cube_1x1x1_SteadyStateDiffusion/ssd-cube.ipynb
+        NOTEBOOKFILE Elliptic/cube_1x1x1_SteadyStateDiffusion/ssd-cube.py
         RUNTIME 6
     )
 endif()

Tests/Data/Elliptic/cube_1x1x1_SteadyStateDiffusion/ssd-cube.py

@@ -0,0 +1,60 @@
+# ---
+# jupyter:
+#   jupytext:
+#     text_representation:
+#       extension: .py
+#       format_name: percent
+#       format_version: '1.3'
+#       jupytext_version: 1.14.5
+#   kernelspec:
+#     display_name: Python 3 (ipykernel)
+#     language: python
+#     name: python3
+# ---
+
+# %% [raw]
+# +++
+# title = "SteadyStateDiffusion Cube Test"
+# date = "2021-11-09"
+# author = "Lars Bilke"
+# web_subsection = "elliptic"
+# draft = true
+# +++
+#
+
+# %% [markdown]
+# This notebook is just for testing and does not show up on the web page because `draft = true` in the metadata.
+
+# %%
+import os
+from pathlib import Path
+
+import pyvista as pv
+
+# %%
+# On CI out_dir is set to the notebooks directory inside the build directory
+# similar to regular benchmark tests. On local testing it will output to the
+# notebooks source directory under a _out-subdirectory.
+out_dir = Path(os.environ.get("OGS_TESTRUNNER_OUT_DIR", "_out"))
+if not out_dir.exists():
+    out_dir.mkdir(parents=True)
+
+if "CI" in os.environ:
+    pv.set_jupyter_backend("static")
+else:
+    pv.set_jupyter_backend("client")
+
+
+# %%
+resolution = "2e4"
+# ! ogs cube_{resolution}.prj -o {out_dir} > {out_dir}/log.txt
+
+
+# %%
+reader = pv.get_reader(f"{out_dir}/cube_{resolution}.pvd")
+reader.set_active_time_value(1.0)  # go to 1 s
+mesh = reader.read()[0]
+
+plotter = pv.Plotter(notebook=True)
+plotter.add_mesh(mesh, scalars="v")  # pressure
+plotter.show()

Tests/Data/Mechanics/EvaluatingBbarWithSimpleExamples/evaluating_bbbar_with_simple_examples.py

@@ -10,6 +10,7 @@
 #     display_name: Python 3 (ipykernel)
 #     language: python
 #     name: python3
+#   note: 'TODO: remove after 6.5.4 release: ci skip'
 # ---
 
 # %% [raw]