From e61704cdf2c6e0cfedd751c01191db9dfc73a4b2 Mon Sep 17 00:00:00 2001
From: pieterlukasse <pieterlukasse@gmail.com>
Date: Thu, 17 Aug 2023 17:39:05 +0200
Subject: [PATCH] feat: added basic dev mode support scripts

... including some fixes / patches to make the code work (fixed outdated lib
and disabled a part of the code that was crashing)
---
 .gitignore                           |   1 +
 README.md                            |  59 ++++-
 docker-compose.yml                   |  19 ++
 fence-config.yaml                    | 273 +++++++++++++++++++++
 fence/config.py                      |   3 +-
 fence/resources/user/__init__.py     |   9 +-
 fence/resources/user/user_session.py |   6 +-
 init_client_in_db.sh                 |  46 ++++
 init_dev.sh                          |  20 ++
 poetry.lock                          | 349 ++++-----------------------
 pyproject.toml                       |   2 +-
 11 files changed, 470 insertions(+), 317 deletions(-)
 create mode 100644 docker-compose.yml
 create mode 100644 fence-config.yaml
 create mode 100755 init_client_in_db.sh
 create mode 100755 init_dev.sh

diff --git a/.gitignore b/.gitignore
index 4a76c3a3e..c49d79d77 100644
--- a/.gitignore
+++ b/.gitignore
@@ -108,3 +108,4 @@ tests/resources/keys/*.pem
 .DS_Store
 .vscode
 .idea
+VENV_PATH
diff --git a/README.md b/README.md
index 33f6ce091..52ee816b2 100644
--- a/README.md
+++ b/README.md
@@ -219,15 +219,6 @@ See [Fence and Google](docs/google_architecture.md) for more details on data acc
 
 ## Setup
 
-#### Install Requirements and Fence
-
-Install [Poetry](https://python-poetry.org/docs/#installation).
-
-```bash
-# Install Fence and dependencies
-poetry install
-```
-
 #### Create Configuration File
 
 Fence requires a configuration file to run. We have a command line
@@ -242,7 +233,7 @@ To create a new configuration file from the default configuration:
 python cfg_help.py create
 ```
 
-This file will be placed in one of the default search directories for Fence.
+This file will be placed in one of the default search directories for Fence (e.g. `~/.gen3/fence/fence-config.yaml`).
 
 To get the exact path where the new configuration file was created, use:
 
@@ -253,6 +244,54 @@ python cfg_help.py get
 The file should have detailed information about each of the configuration
 variables. **Remember to fill out the new configuration file!**
 
+#### Using Docker
+
+Build image using:
+
+```bash
+docker build . -t fence
+```
+
+:information_source: before running the command below,
+make sure you have the desired configuration in the .yaml and
+the necessary .pem files (see section **"Keypair Configuration"**) .
+
+Run with:
+
+```bash
+docker run --rm \
+-v /path/to/fence-config.yaml:/var/www/fence/fence-config.yaml:ro \
+-v /path/to/keys-folder-with-pem-files/:/fence/keys/folder/:ro \
+--name=fence \
+-p 80:80 \
+fence
+```
+
+Setup `fence_test` DB with:
+
+```bash
+ ./init_dev_db.sh
+```
+
+#### Using Poetry
+
+Install [Poetry](https://python-poetry.org/docs/#installation).
+
+Build with:
+
+```bash
+# Enter virtual environment
+poetry shell
+# Install Fence and dependencies
+poetry install
+```
+
+Run with:
+
+```bash
+And `run.py`
+```
+
 ##### Other Configuration Notes
 
 * Fence will look for configuration files from a list of search directories (
diff --git a/docker-compose.yml b/docker-compose.yml
new file mode 100644
index 000000000..76891922b
--- /dev/null
+++ b/docker-compose.yml
@@ -0,0 +1,19 @@
+version: '3.9'
+
+
+services:
+  # MEANT FOR LOCAL DEV ONLY
+  fence:
+    image: fence
+    container_name: fence
+    ports:
+      - "80:80"
+    volumes:
+      - $PWD/fence-config.yaml:/var/www/fence/fence-config.yaml:ro
+      - $PWD/keys/:/fence/keys:ro
+
+  fence_db:
+    image: postgres:12.10-bullseye
+    container_name: fence_db
+    environment:
+      POSTGRES_PASSWORD: mysecretpassword  # pragma: allowlist secret
diff --git a/fence-config.yaml b/fence-config.yaml
new file mode 100644
index 000000000..722168bb9
--- /dev/null
+++ b/fence-config.yaml
@@ -0,0 +1,273 @@
+---
+############################### Fence Configuration ####################################
+# This file contains various configurations for the Fence microservice.
+#
+# README:
+# - This is initially configured for minimal local development with reasonable defaults.
+# - Descriptions for each of the configurations (if any) will be *above* the variable as
+#   comments.
+# - Some configuration variables will have examples commented out below them.
+# - This is broken up into 2 main sections for REQUIRED and OPTIONAL configurations.
+#     - Optional configs will note what features or endpoints they support
+# - Underneath each main section the variables are logically grouped under named
+#   sections.
+#
+# NOTE: Login is NOT ready out of the box. Fill out REQUIRED configurations first
+
+########################################################################################
+#                               REQUIRED CONFIGURATIONS                                #
+########################################################################################
+APP_NAME: 'Gen3 Data Commons'
+# Where fence microservice is deployed
+BASE_URL: 'http://fence'
+# postgres db to connect to
+# connection url format:
+#     postgresql://[user[:password]@][netloc][:port][/dbname]
+# can also be set via env var DB
+DB: 'postgresql://postgres:mysecretpassword@fence_db:5432/fence_test' # pragma: allowlist secret
+
+ENCRYPTION_KEY: ''
+
+DEBUG: true
+MOCK_AUTH: true
+MOCK_GOOGLE_AUTH: true
+DEV_LOGIN_COOKIE_NAME: "dev_login"
+
+MOCK_STORAGE: true
+AUTHLIB_INSECURE_TRANSPORT: true
+ENABLE_PROMETHEUS_METRICS: false
+SESSION_COOKIE_SECURE: true
+
+ENABLE_CSRF_PROTECTION: true
+WTF_CSRF_SECRET_KEY: '{{ENCRYPTION_KEY}}'
+
+ENABLE_DB_MIGRATION: true
+DB_MIGRATION_POSTGRES_LOCK_KEY: 100
+
+
+# //////////////////////////////////////////////////////////////////////////////////////
+# OPEN ID CONNECT (OIDC)
+#   - Fully configure at least one client so login works
+#   - WARNING: Be careful changing the *_ALLOWED_SCOPES as you can break basic
+#              and optional functionality
+# //////////////////////////////////////////////////////////////////////////////////////
+OPENID_CONNECT:
+  fence:
+    # this api_base_url should be the root url for the OTHER fence
+    # something like: https://example.com
+    api_base_url: ''
+    # this client_id and client_secret should be obtained by registering THIS fence as
+    # a new client of the OTHER fence
+    client_id: ''
+    client_secret: ''
+    client_kwargs:
+      # openid is required to use OIDC flow
+      scope: 'openid'
+      # callback after logging in through the other fence
+      redirect_uri: '{{BASE_URL}}/login/fence/login'
+    # The next 3 should not need to be changed if the provider is following
+    # Oauth2 endpoint naming conventions
+    authorize_url: '{{api_base_url}}/oauth2/authorize'
+    access_token_url: '{{api_base_url}}/oauth2/token'
+    refresh_token_url: '{{api_base_url}}/oauth2/token'
+    name: ''
+    # if mock is true, will fake a successful login response for login
+    # WARNING: DO NOT ENABLE IN PRODUCTION (for testing purposes only)
+    mock: true
+    mock_default_user: 'test@example.com'
+    # this is needed to enable InCommon login, if some LOGIN_OPTIONS are configured with idp=fence and a list of shib_idps:
+    shibboleth_discovery_url: ''
+
+# these are the *possible* scopes a client can be given, NOT scopes that are
+# given to all clients. You can be more restrictive during client creation
+CLIENT_ALLOWED_SCOPES:
+  - "openid"
+  - "user"
+  - "data"
+  - "google_credentials"
+  - "google_service_account"
+  - "google_link"
+  - "ga4gh_passport_v1"
+
+# these are the scopes that CAN be included in a user's own access_token
+USER_ALLOWED_SCOPES:
+  - "fence"
+  - "openid"
+  - "user"
+  - "data"
+  - "admin"
+  - "google_credentials"
+  - "google_service_account"
+  - "google_link"
+  - "ga4gh_passport_v1"
+SESSION_ALLOWED_SCOPES:
+  - "openid"
+  - "user"
+  - "credentials"
+  - "data"
+  - "admin"
+  - "google_credentials"
+  - "google_service_account"
+  - "google_link"
+  - "ga4gh_passport_v1"
+
+LOGIN_OPTIONS: []
+
+DEFAULT_LOGIN_IDP: null
+
+DEFAULT_LOGIN_URL: '{{BASE_URL}}/login/google'
+LOGIN_REDIRECT_WHITELIST: []
+ENABLED_IDENTITY_PROVIDERS: {}
+
+OAUTH2_JWT_ALG: 'RS256'
+OAUTH2_JWT_ENABLED: true
+OAUTH2_JWT_ISS: '{{BASE_URL}}'
+OAUTH2_PROVIDER_ERROR_URI: '/api/oauth2/errors'
+APPLICATION_ROOT: '/user'
+
+ACCESS_TOKEN_COOKIE_NAME: "access_token"
+SESSION_COOKIE_NAME: "fence"
+
+SESSION_COOKIE_DOMAIN:
+
+OAUTH2_TOKEN_EXPIRES_IN:
+  "authorization_code": 1200
+  "implicit": 1200
+ACCESS_TOKEN_EXPIRES_IN: 1200
+REFRESH_TOKEN_EXPIRES_IN: 2592000
+SESSION_TIMEOUT: 900
+SESSION_LIFETIME: 28800
+GOOGLE_SERVICE_ACCOUNT_KEY_FOR_URL_SIGNING_EXPIRES_IN: 2592000
+GOOGLE_USER_SERVICE_ACCOUNT_ACCESS_EXPIRES_IN: 604800
+
+GOOGLE_ACCOUNT_ACCESS_EXPIRES_IN: 86400
+MAX_PRESIGNED_URL_TTL: 3600
+MAX_API_KEY_TTL: 2592000
+MAX_ACCESS_TOKEN_TTL: 3600
+TOKEN_PROJECTS_CUTOFF: 10
+RENEW_ACCESS_TOKEN_BEFORE_EXPIRATION: false
+GEN3_PASSPORT_EXPIRES_IN: 43200
+
+GA4GH_DRS_POSTED_PASSPORT_FIELD: "passports"
+PRIVACY_POLICY_URL: null
+OVERRIDE_NGINX_RATE_LIMIT: 18
+
+DEFAULT_BACKOFF_SETTINGS_MAX_TRIES: 3
+SUPPORT_EMAIL_FOR_ERRORS: null
+
+SHIBBOLETH_HEADER: ''
+SSO_URL: ''
+ITRUST_GLOBAL_LOGOUT: ''
+GOOGLE_BULK_UPDATES: false
+
+STORAGE_CREDENTIALS: {}
+
+AWS_CREDENTIALS: {}
+S3_BUCKETS: {}
+
+GS_BUCKETS: {}
+ALLOWED_DATA_UPLOAD_BUCKETS: []
+
+DATA_UPLOAD_BUCKET: ''
+
+HTTP_PROXY:
+  host: null
+  port: 3128
+INDEXD: null
+INDEXD_USERNAME: 'fence'
+INDEXD_PASSWORD: ''
+AZ_BLOB_CREDENTIALS:
+AZ_BLOB_CONTAINER_URL: 'https://myfakeblob.blob.core.net/my-fake-container/'
+ARBORIST: null
+AUDIT_SERVICE: 'http://audit-service'
+ENABLE_AUDIT_LOGS:
+  presigned_url: false
+  login: false
+
+PUSH_AUDIT_LOGS_CONFIG:
+  type: aws_sqs
+  aws_sqs_config:
+    sqs_url:
+    region:
+    aws_cred:
+
+CIRRUS_CFG:
+  GOOGLE_API_KEY: ''
+  GOOGLE_PROJECT_ID: ''
+  GOOGLE_APPLICATION_CREDENTIALS: ''
+  GOOGLE_STORAGE_CREDS: ''
+  GOOGLE_ADMIN_EMAIL: ''
+  GOOGLE_IDENTITY_DOMAIN: ''
+  GOOGLE_CLOUD_IDENTITY_ADMIN_EMAIL: ''
+GOOGLE_GROUP_PREFIX: ''
+
+GOOGLE_SERVICE_ACCOUNT_PREFIX: ''
+BILLING_PROJECT_FOR_SIGNED_URLS:
+BILLING_PROJECT_FOR_SA_CREDS:
+ENABLE_AUTOMATIC_BILLING_PERMISSION_SIGNED_URLS: false
+ENABLE_AUTOMATIC_BILLING_PERMISSION_SA_CREDS: false
+
+GUN_MAIL:
+  'datacommons':
+    smtp_hostname: 'smtp.some.org'
+    api_key: ''
+    default_login: 'postmaster@some.example.com'
+    api_url: 'https://api.some.net/v3/some.example.com'
+    smtp_password: ''
+EMAIL_SERVER: 'localhost'
+SEND_FROM: 'example@some.com'
+SEND_TO: 'example@some.com'
+ALLOW_GOOGLE_LINKING: true
+WHITE_LISTED_GOOGLE_PARENT_ORGS: []
+
+WHITE_LISTED_SERVICE_ACCOUNT_EMAILS: []
+
+REMOVE_SERVICE_ACCOUNT_EMAIL_NOTIFICATION:
+  enable: false
+  # this domain MUST exist in GUN_MAIL config
+  domain: 'example.com'
+  from: 'do-not-reply@example.com'
+  subject: 'User service account removal notification'
+  # the {} gets replaced dynamically in the Python code to be the Project ID
+  content: >
+    Some content.
+  #
+  # WARNING: This is NOT a bcc so the email is visible to the end-user
+  admin:
+    - 'admin@example.edu'
+
+PROBLEM_USER_EMAIL_NOTIFICATION:
+  # this domain MUST exist in GUN_MAIL config
+  domain: 'example.com'
+  from: 'do-not-reply@example.com'
+  subject: 'Account access error notification'
+  # the {} gets replaced dynamically in the Python code to be the Project ID
+  content: >
+    Some content.
+  #
+  # WARNING: This is NOT a bcc so the email is visible to the end-user
+  admin:
+    - 'admin@example.edu'
+GOOGLE_MANAGED_SERVICE_ACCOUNT_DOMAINS: []
+
+ALLOWED_USER_SERVICE_ACCOUNT_DOMAINS: []
+
+MAX_ROLE_SESSION_INCREASE: false
+ASSUME_ROLE_CACHE_SECONDS: 1800
+REGISTER_USERS_ON: false
+REGISTERED_USERS_GROUP: ''
+SERVICE_ACCOUNT_LIMIT: 6
+
+GA4GH_PASSPORTS_TO_DRS_ENABLED: false
+RAS_REFRESH_EXPIRATION: 1296000
+
+EXPIRED_AUTHZ_REMOVAL_JOB_FREQ_IN_SECONDS: 300
+
+GLOBAL_PARSE_VISAS_ON_LOGIN: false
+
+ENABLE_VISA_UPDATE_CRON: false
+USERSYNC:
+  visa_types:
+    ras: []
+RAS_USERINFO_ENDPOINT: ''
+CLIENT_CREDENTIALS_ON_DOWNLOAD_ENABLED: false
diff --git a/fence/config.py b/fence/config.py
index c7455e935..8ceb011a5 100644
--- a/fence/config.py
+++ b/fence/config.py
@@ -143,7 +143,8 @@ def post_process(self):
                 "Visa parsing on login is enabled but `ENABLE_VISA_UPDATE_CRON` is disabled!"
             )
 
-        self._validate_parent_child_studies(self._configs["dbGaP"])
+        # if self._configs["dbGaP"]:
+        #     self._validate_parent_child_studies(self._configs["dbGaP"])
 
     @staticmethod
     def _validate_parent_child_studies(dbgap_configs):
diff --git a/fence/resources/user/__init__.py b/fence/resources/user/__init__.py
index c4c1647aa..71c04d026 100644
--- a/fence/resources/user/__init__.py
+++ b/fence/resources/user/__init__.py
@@ -105,10 +105,11 @@ def get_user_info(current_session, username):
         info["shib_idp"] = flask.session["shib_idp"]
 
     # User SAs are stored in db with client_id = None
-    primary_service_account = (
-        get_service_account(client_id=None, user_id=user.id, username=user.username)
-        or {}
-    )
+    # primary_service_account = (
+    #     get_service_account(client_id=None, user_id=user.id, username=user.username)
+    #     or {}
+    # )
+    primary_service_account = {}
     primary_service_account_email = getattr(primary_service_account, "email", None)
     info["primary_google_service_account"] = primary_service_account_email
 
diff --git a/fence/resources/user/user_session.py b/fence/resources/user/user_session.py
index b17ffb775..73669b459 100644
--- a/fence/resources/user/user_session.py
+++ b/fence/resources/user/user_session.py
@@ -321,9 +321,9 @@ def _create_access_token_cookie(app, session, response, user):
     expiration = now + config.get("ACCESS_TOKEN_EXPIRES_IN")
 
     # try to get from current session, if it's not there, we have to hit db
-    linked_google_email = session.get("linked_google_email")
-    if not linked_google_email:
-        linked_google_email = get_linked_google_account_email(user.id)
+    linked_google_email = "a@a"  # session.get("linked_google_email")
+    # if not linked_google_email:
+    #     linked_google_email = get_linked_google_account_email(user.id)
 
     access_token = generate_signed_access_token(
         keypair.kid,
diff --git a/init_client_in_db.sh b/init_client_in_db.sh
new file mode 100755
index 000000000..8f5b6ce7a
--- /dev/null
+++ b/init_client_in_db.sh
@@ -0,0 +1,46 @@
+#/bin/bash
+
+# MEANT FOR LOCAL DEV ONLY
+
+# Run this script to setup a new test database on an already running
+# postgres container (set DB_CONTAINER_NAME below)
+
+#### Setting up a database for local development
+
+DB_CONTAINER_NAME="fence_db"
+FENCE_CONTAINER_NAME="fence"
+
+
+
+# Create DB, add test user:
+docker exec -i \
+$DB_CONTAINER_NAME \
+psql -U postgres -d postgres -c 'create database fence_test'
+
+docker exec -i \
+$DB_CONTAINER_NAME \
+psql -U postgres -d postgres -c "create user test with password 'test' superuser"
+
+
+sleep 6
+
+# init DB:
+# docker exec -i \
+# $FENCE_CONTAINER_NAME \
+# userdatamodel-init --host "$DB_CONTAINER_NAME" --db fence_test --username test --password test
+
+docker exec -i  -w /fence/ \
+$FENCE_CONTAINER_NAME \
+alembic upgrade head
+
+
+docker exec -i \
+$DB_CONTAINER_NAME \
+psql -U postgres -d fence_test -c "insert into \"User\" (id, username, email) values (10, 'test', 'test@test.uchicago.edu'); commit;"
+
+sleep 6
+
+# add Atlas as client:
+docker exec -i \
+$FENCE_CONTAINER_NAME \
+fence-create client-create --client ATLAS --urls http://127.0.0.1/WebAPI/user/oauth/callback?client_name=OidcClient --username ATLAS
diff --git a/init_dev.sh b/init_dev.sh
new file mode 100755
index 000000000..e9f3fd95e
--- /dev/null
+++ b/init_dev.sh
@@ -0,0 +1,20 @@
+#/bin/bash
+
+# MEANT FOR LOCAL DEV ONLY
+
+
+# Run:
+# 1. this script
+# 2. docker-compose up -d
+# 3. ./init_client_in_db.sh
+
+
+mkdir keys/v1
+
+cd keys/v1
+
+# Generate the private key.
+openssl genpkey -algorithm RSA -out jwt_private_key.pem -pkeyopt rsa_keygen_bits:2048
+
+# Generate the public key.
+openssl rsa -pubout -in jwt_private_key.pem -out jwt_public_key.pem
diff --git a/poetry.lock b/poetry.lock
index e4bf0fe1b..354a9198a 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
 
 [[package]]
 name = "addict"
 version = "2.4.0"
 description = "Addict is a dictionary whose items can be set using both attribute and item syntax."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -16,7 +15,6 @@ files = [
 name = "alembic"
 version = "1.11.2"
 description = "A database migration tool for SQLAlchemy."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -36,7 +34,6 @@ tz = ["python-dateutil"]
 name = "aniso8601"
 version = "9.0.1"
 description = "A library for parsing ISO 8601 strings."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -51,7 +48,6 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
 name = "anyio"
 version = "3.7.1"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -73,7 +69,6 @@ trio = ["trio (<0.22)"]
 name = "atomicwrites"
 version = "1.4.1"
 description = "Atomic file writes."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -84,7 +79,6 @@ files = [
 name = "attrs"
 version = "23.1.0"
 description = "Classes Without Boilerplate"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -103,7 +97,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 name = "Authlib"
 version = "0.11"
 description = "The ultimate Python library in building OAuth and OpenID Connect servers."
-category = "main"
 optional = false
 python-versions = "*"
 files = []
@@ -123,7 +116,6 @@ resolved_reference = "80345f2877ec2a1a29468aa465c07623347c3ef6"
 name = "authutils"
 version = "6.2.2"
 description = "Gen3 auth utility functions"
-category = "main"
 optional = false
 python-versions = ">=3.9,<4.0"
 files = [
@@ -147,7 +139,6 @@ flask = ["Flask (>=0.10.1)"]
 name = "aws-xray-sdk"
 version = "0.95"
 description = "The AWS X-Ray SDK for Python (the SDK) enables Python developers to record and emit information from within their applications to the AWS X-Ray service."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -162,20 +153,19 @@ wrapt = "*"
 
 [[package]]
 name = "azure-core"
-version = "1.28.0"
+version = "1.29.2"
 description = "Microsoft Azure Core Library for Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "azure-core-1.28.0.zip", hash = "sha256:e9eefc66fc1fde56dab6f04d4e5d12c60754d5a9fa49bdcfd8534fc96ed936bd"},
-    {file = "azure_core-1.28.0-py3-none-any.whl", hash = "sha256:dec36dfc8eb0b052a853f30c07437effec2f9e3e1fc8f703d9bdaa5cfc0043d9"},
+    {file = "azure-core-1.29.2.zip", hash = "sha256:beb0fe88d1043d8457318e8fb841d9caa648211092eda213c16b376401f3710d"},
+    {file = "azure_core-1.29.2-py3-none-any.whl", hash = "sha256:8e6602f322dc1070caf7e17754beb53b69ffa09df0f4786009a3107e9a00c793"},
 ]
 
 [package.dependencies]
 requests = ">=2.18.4"
 six = ">=1.11.0"
-typing-extensions = ">=4.3.0"
+typing-extensions = ">=4.6.0"
 
 [package.extras]
 aio = ["aiohttp (>=3.0)"]
@@ -184,7 +174,6 @@ aio = ["aiohttp (>=3.0)"]
 name = "azure-storage-blob"
 version = "12.17.0"
 description = "Microsoft Azure Blob Storage Client Library for Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -205,7 +194,6 @@ aio = ["azure-core[aio] (>=1.28.0,<2.0.0)"]
 name = "backoff"
 version = "1.11.1"
 description = "Function decoration for backoff and retry"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -217,7 +205,6 @@ files = [
 name = "bcrypt"
 version = "3.2.2"
 description = "Modern password hashing for your software and your servers"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -245,7 +232,6 @@ typecheck = ["mypy"]
 name = "blinker"
 version = "1.6.2"
 description = "Fast, simple object-to-object and broadcast signaling"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -257,7 +243,6 @@ files = [
 name = "boto"
 version = "2.49.0"
 description = "Amazon Web Services Library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -269,7 +254,6 @@ files = [
 name = "boto3"
 version = "1.9.253"
 description = "The AWS SDK for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -286,7 +270,6 @@ s3transfer = ">=0.2.0,<0.3.0"
 name = "botocore"
 version = "1.12.253"
 description = "Low-level, data-driven core of boto 3."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -304,7 +287,6 @@ urllib3 = {version = ">=1.20,<1.26", markers = "python_version >= \"3.4\""}
 name = "cached-property"
 version = "1.5.2"
 description = "A decorator for caching properties in classes."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -316,7 +298,6 @@ files = [
 name = "cachelib"
 version = "0.2.0"
 description = "A collection of cache libraries in the same API interface."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -328,7 +309,6 @@ files = [
 name = "cachetools"
 version = "4.2.4"
 description = "Extensible memoizing collections and decorators"
-category = "main"
 optional = false
 python-versions = "~=3.5"
 files = [
@@ -340,7 +320,6 @@ files = [
 name = "cdiserrors"
 version = "1.0.0"
 description = "Gen3 shared exceptions and utilities."
-category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -358,7 +337,6 @@ flask = ["Flask (>=1.1.2,<2.0.0)"]
 name = "cdislogging"
 version = "1.0.0"
 description = "Standardized logging tool and format for cdis applications"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -369,7 +347,6 @@ files = [
 name = "cdispyutils"
 version = "2.0.1"
 description = "This package includes several utility Python tools for the Gen3 stack."
-category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -388,7 +365,6 @@ requests = "*"
 name = "cdisutilstest"
 version = "0.2.4"
 description = "Collection of test data and tools"
-category = "dev"
 optional = false
 python-versions = "*"
 files = []
@@ -404,7 +380,6 @@ resolved_reference = "bdfdeb05e45407e839fd954ce6d195d847cd8024"
 name = "certifi"
 version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -416,7 +391,6 @@ files = [
 name = "cffi"
 version = "1.15.1"
 description = "Foreign Function Interface for Python calling C code."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -493,7 +467,6 @@ pycparser = "*"
 name = "charset-normalizer"
 version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -578,7 +551,6 @@ files = [
 name = "click"
 version = "8.1.6"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -593,7 +565,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "codacy-coverage"
 version = "1.3.11"
 description = "Codacy coverage reporter for Python"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -612,7 +583,6 @@ test = ["coverage", "nosetests"]
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -624,7 +594,6 @@ files = [
 name = "coverage"
 version = "5.5"
 description = "Code coverage measurement for Python"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
 files = [
@@ -689,7 +658,6 @@ toml = ["toml"]
 name = "coveralls"
 version = "2.2.0"
 description = "Show coverage stats online via coveralls.io"
-category = "dev"
 optional = false
 python-versions = ">= 3.5"
 files = [
@@ -709,7 +677,6 @@ yaml = ["PyYAML (>=3.10)"]
 name = "cryptography"
 version = "41.0.3"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -755,7 +722,6 @@ test-randomorder = ["pytest-randomly"]
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -765,14 +731,13 @@ files = [
 
 [[package]]
 name = "dnspython"
-version = "2.4.1"
+version = "2.4.2"
 description = "DNS toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
-    {file = "dnspython-2.4.1-py3-none-any.whl", hash = "sha256:5b7488477388b8c0b70a8ce93b227c5603bc7b77f1565afe8e729c36c51447d7"},
-    {file = "dnspython-2.4.1.tar.gz", hash = "sha256:c33971c79af5be968bb897e95c2448e11a645ee84d93b265ce0b7aabe5dfdca8"},
+    {file = "dnspython-2.4.2-py3-none-any.whl", hash = "sha256:57c6fbaaeaaf39c891292012060beb141791735dbb4004798328fc2c467402d8"},
+    {file = "dnspython-2.4.2.tar.gz", hash = "sha256:8dcfae8c7460a2f84b4072e26f1c9f4101ca20c071649cb7c34e8b6a93d58984"},
 ]
 
 [package.extras]
@@ -787,7 +752,6 @@ wmi = ["wmi (>=1.5.1,<2.0.0)"]
 name = "docker"
 version = "5.0.3"
 description = "A Python library for the Docker Engine API."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -808,7 +772,6 @@ tls = ["cryptography (>=3.4.7)", "idna (>=2.0.0)", "pyOpenSSL (>=17.5.0)"]
 name = "docopt"
 version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -819,7 +782,6 @@ files = [
 name = "docutils"
 version = "0.15.2"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -832,7 +794,6 @@ files = [
 name = "ecdsa"
 version = "0.18.0"
 description = "ECDSA cryptographic signature library (pure python)"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -851,7 +812,6 @@ gmpy2 = ["gmpy2"]
 name = "email-validator"
 version = "1.3.1"
 description = "A robust email address syntax and deliverability validation library."
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -865,14 +825,13 @@ idna = ">=2.0.0"
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.2"
+version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "exceptiongroup-1.1.2-py3-none-any.whl", hash = "sha256:e346e69d186172ca7cf029c8c1d16235aa0e04035e5750b4b95039e65204328f"},
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+    {file = "exceptiongroup-1.1.3-py3-none-any.whl", hash = "sha256:343280667a4585d195ca1cf9cef84a4e178c4b6cf2274caef9859782b567d5e3"},
+    {file = "exceptiongroup-1.1.3.tar.gz", hash = "sha256:097acd85d473d75af5bb98e41b61ff7fe35efe6675e4f9370ec6ec5126d160e9"},
 ]
 
 [package.extras]
@@ -882,7 +841,6 @@ test = ["pytest (>=6)"]
 name = "flask"
 version = "2.3.2"
 description = "A simple framework for building complex web applications."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -906,7 +864,6 @@ dotenv = ["python-dotenv"]
 name = "flask-cors"
 version = "4.0.0"
 description = "A Flask extension adding a decorator for CORS support"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -921,7 +878,6 @@ Flask = ">=0.9"
 name = "flask-restful"
 version = "0.3.10"
 description = "Simple framework for creating REST APIs"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -942,7 +898,6 @@ docs = ["sphinx"]
 name = "flask-wtf"
 version = "1.1.1"
 description = "Form rendering, validation, and CSRF protection for Flask with WTForms."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -962,7 +917,6 @@ email = ["email-validator"]
 name = "future"
 version = "0.18.3"
 description = "Clean single-source support for Python 3 and 2"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -973,7 +927,6 @@ files = [
 name = "gen3authz"
 version = "1.5.1"
 description = "Gen3 authz client"
-category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -991,7 +944,6 @@ six = ">=1.16.0,<2.0.0"
 name = "gen3cirrus"
 version = "2.0.0"
 description = ""
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1011,7 +963,6 @@ oauth2client = ">=2.0.0,<4.0dev"
 name = "gen3config"
 version = "1.1.0"
 description = "Gen3 Configuration Library"
-category = "main"
 optional = false
 python-versions = "^3.9"
 files = [
@@ -1029,7 +980,6 @@ six = "*"
 name = "gen3users"
 version = "0.6.0"
 description = "Utils for Gen3 commons user management"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1045,7 +995,6 @@ PyYAML = ">=5.1,<6.0"
 name = "google-api-core"
 version = "1.34.0"
 description = "Google API client core library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1068,7 +1017,6 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0dev)"]
 name = "google-api-python-client"
 version = "1.11.0"
 description = "Google API Client Library for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -1088,7 +1036,6 @@ uritemplate = ">=3.0.0,<4dev"
 name = "google-auth"
 version = "1.35.0"
 description = "Google Authentication Library"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 files = [
@@ -1112,7 +1059,6 @@ reauth = ["pyu2f (>=0.1.5)"]
 name = "google-auth-httplib2"
 version = "0.1.0"
 description = "Google Authentication Library: httplib2 transport"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1129,7 +1075,6 @@ six = "*"
 name = "google-cloud-core"
 version = "2.3.3"
 description = "Google Cloud API client core library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1138,7 +1083,7 @@ files = [
 ]
 
 [package.dependencies]
-google-api-core = ">=1.31.6,<2.0.0 || >2.3.0,<3.0.0dev"
+google-api-core = ">=1.31.6,<2.0.dev0 || >2.3.0,<3.0.0dev"
 google-auth = ">=1.25.0,<3.0dev"
 
 [package.extras]
@@ -1148,7 +1093,6 @@ grpc = ["grpcio (>=1.38.0,<2.0dev)"]
 name = "google-cloud-storage"
 version = "1.44.0"
 description = "Google Cloud Storage API client library"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 files = [
@@ -1169,7 +1113,6 @@ six = "*"
 name = "google-crc32c"
 version = "1.5.0"
 description = "A python wrapper of the C library 'Google CRC32C'"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1250,7 +1193,6 @@ testing = ["pytest"]
 name = "google-resumable-media"
 version = "2.5.0"
 description = "Utilities for Google Media Downloads and Resumable Uploads"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -1269,7 +1211,6 @@ requests = ["requests (>=2.18.0,<3.0.0dev)"]
 name = "googleapis-common-protos"
 version = "1.60.0"
 description = "Common protobufs used in Google APIs"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1283,85 +1224,10 @@ protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.1 || >4.21.1,<4
 [package.extras]
 grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
 
-[[package]]
-name = "greenlet"
-version = "2.0.2"
-description = "Lightweight in-process concurrent programming"
-category = "main"
-optional = false
-python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
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-]
-
-[package.extras]
-docs = ["Sphinx", "docutils (<0.18)"]
-test = ["objgraph", "psutil"]
-
 [[package]]
 name = "h11"
 version = "0.14.0"
 description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1373,7 +1239,6 @@ files = [
 name = "httpcore"
 version = "0.17.3"
 description = "A minimal low-level HTTP client."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1385,17 +1250,16 @@ files = [
 anyio = ">=3.0,<5.0"
 certifi = "*"
 h11 = ">=0.13,<0.15"
-sniffio = ">=1.0.0,<2.0.0"
+sniffio = "==1.*"
 
 [package.extras]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (>=1.0.0,<2.0.0)"]
+socks = ["socksio (==1.*)"]
 
 [[package]]
 name = "httplib2"
 version = "0.22.0"
 description = "A comprehensive HTTP client library."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1410,7 +1274,6 @@ pyparsing = {version = ">=2.4.2,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.0.2 || >3.0
 name = "httpx"
 version = "0.24.1"
 description = "The next generation HTTP client."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1426,15 +1289,14 @@ sniffio = "*"
 
 [package.extras]
 brotli = ["brotli", "brotlicffi"]
-cli = ["click (>=8.0.0,<9.0.0)", "pygments (>=2.0.0,<3.0.0)", "rich (>=10,<14)"]
+cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (>=1.0.0,<2.0.0)"]
+socks = ["socksio (==1.*)"]
 
 [[package]]
 name = "idna"
 version = "2.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1446,7 +1308,6 @@ files = [
 name = "importlib-metadata"
 version = "6.8.0"
 description = "Read metadata from Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1466,7 +1327,6 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs
 name = "isodate"
 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1481,7 +1341,6 @@ six = "*"
 name = "itsdangerous"
 version = "2.1.2"
 description = "Safely pass data to untrusted environments and back."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1493,7 +1352,6 @@ files = [
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1511,7 +1369,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jmespath"
 version = "0.9.2"
 description = "JSON Matching Expressions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1523,7 +1380,6 @@ files = [
 name = "jsondiff"
 version = "1.1.1"
 description = "Diff JSON and JSON-like structures in Python"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1532,14 +1388,13 @@ files = [
 
 [[package]]
 name = "jsonpickle"
-version = "3.0.1"
+version = "3.0.2"
 description = "Python library for serializing any arbitrary object graph into JSON"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "jsonpickle-3.0.1.tar.gz", hash = "sha256:032538804795e73b94ead410800ac387fdb6de98f8882ac957fcd247e3a85200"},
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 ]
 
 [package.extras]
@@ -1551,7 +1406,6 @@ testing-libs = ["simplejson", "ujson"]
 name = "mako"
 version = "1.2.4"
 description = "A super-fast templating language that borrows the best ideas from the existing templating languages."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1571,7 +1425,6 @@ testing = ["pytest"]
 name = "markdown"
 version = "3.4.4"
 description = "Python implementation of John Gruber's Markdown."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1590,7 +1443,6 @@ testing = ["coverage", "pyyaml"]
 name = "markupsafe"
 version = "2.1.3"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1650,7 +1502,6 @@ files = [
 name = "mock"
 version = "2.0.0"
 description = "Rolling backport of unittest.mock for all Pythons"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1670,7 +1521,6 @@ test = ["unittest2 (>=1.1.0)"]
 name = "more-itertools"
 version = "10.1.0"
 description = "More routines for operating on iterables, beyond itertools"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1682,7 +1532,6 @@ files = [
 name = "moto"
 version = "1.3.7"
 description = "A library that allows your python tests to easily mock out the boto library"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1717,7 +1566,6 @@ server = ["flask"]
 name = "oauth2client"
 version = "3.0.0"
 description = "OAuth 2.0 client library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1735,7 +1583,6 @@ six = ">=1.6.1"
 name = "paramiko"
 version = "2.12.0"
 description = "SSH2 protocol library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1759,7 +1606,6 @@ invoke = ["invoke (>=1.3)"]
 name = "pbr"
 version = "2.0.0"
 description = "Python Build Reasonableness"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1771,7 +1617,6 @@ files = [
 name = "pluggy"
 version = "1.2.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1787,7 +1632,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "prometheus-client"
 version = "0.9.0"
 description = "Python client for the Prometheus monitoring system."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1802,7 +1646,6 @@ twisted = ["twisted"]
 name = "protobuf"
 version = "3.20.3"
 description = "Protocol Buffers"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1832,32 +1675,28 @@ files = [
 
 [[package]]
 name = "psycopg2"
-version = "2.9.6"
+version = "2.9.7"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
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+    {file = "psycopg2-2.9.7-cp39-cp39-win_amd64.whl", hash = "sha256:b6bd7d9d3a7a63faae6edf365f0ed0e9b0a1aaf1da3ca146e6b043fb3eb5d723"},
+    {file = "psycopg2-2.9.7.tar.gz", hash = "sha256:f00cc35bd7119f1fed17b85bd1007855194dde2cbd8de01ab8ebb17487440ad8"},
 ]
 
 [[package]]
 name = "py"
 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1869,7 +1708,6 @@ files = [
 name = "pyaml"
 version = "23.7.0"
 description = "PyYAML-based module to produce a bit more pretty and readable YAML-serialized data"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1887,7 +1725,6 @@ anchors = ["unidecode"]
 name = "pyasn1"
 version = "0.5.0"
 description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -1899,7 +1736,6 @@ files = [
 name = "pyasn1-modules"
 version = "0.3.0"
 description = "A collection of ASN.1-based protocols modules"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -1914,7 +1750,6 @@ pyasn1 = ">=0.4.6,<0.6.0"
 name = "pycparser"
 version = "2.21"
 description = "C parser in Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1926,7 +1761,6 @@ files = [
 name = "pycryptodome"
 version = "3.18.0"
 description = "Cryptographic library for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1968,7 +1802,6 @@ files = [
 name = "pyjwt"
 version = "2.8.0"
 description = "JSON Web Token implementation in Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1989,7 +1822,6 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 name = "pynacl"
 version = "1.5.0"
 description = "Python binding to the Networking and Cryptography (NaCl) library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2016,7 +1848,6 @@ tests = ["hypothesis (>=3.27.0)", "pytest (>=3.2.1,!=3.3.0)"]
 name = "pyparsing"
 version = "3.1.1"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
-category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
@@ -2031,7 +1862,6 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pytest"
 version = "3.10.1"
 description = "pytest: simple powerful testing with Python"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2053,7 +1883,6 @@ six = ">=1.10.0"
 name = "pytest-cov"
 version = "2.9.0"
 description = "Pytest plugin for measuring coverage."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -2072,7 +1901,6 @@ testing = ["fields", "hunter", "process-tests (==2.0.2)", "pytest-xdist", "six",
 name = "pytest-flask"
 version = "0.15.1"
 description = "A set of py.test fixtures to test Flask applications."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2092,7 +1920,6 @@ docs = ["Sphinx", "sphinx-rtd-theme"]
 name = "python-dateutil"
 version = "2.8.2"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -2107,7 +1934,6 @@ six = ">=1.5"
 name = "python-jose"
 version = "2.0.2"
 description = "JOSE implementation in Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2129,7 +1955,6 @@ pycrypto = ["pycrypto (>=2.6.0,<2.7.0)"]
 name = "pytz"
 version = "2023.3"
 description = "World timezone definitions, modern and historical"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2141,7 +1966,6 @@ files = [
 name = "pywin32"
 version = "227"
 description = "Python for Window Extensions"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2163,7 +1987,6 @@ files = [
 name = "pyyaml"
 version = "5.4.1"
 description = "YAML parser and emitter for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -2202,7 +2025,6 @@ files = [
 name = "requests"
 version = "2.31.0"
 description = "Python HTTP for Humans."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2224,7 +2046,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "responses"
 version = "0.23.3"
 description = "A utility library for mocking out the `requests` Python library."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2245,7 +2066,6 @@ tests = ["coverage (>=6.0.0)", "flake8", "mypy", "pytest (>=7.0.0)", "pytest-asy
 name = "retry"
 version = "0.9.2"
 description = "Easy to use retry decorator."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2261,7 +2081,6 @@ py = ">=1.4.26,<2.0.0"
 name = "rsa"
 version = "4.9"
 description = "Pure-Python RSA implementation"
-category = "main"
 optional = false
 python-versions = ">=3.6,<4"
 files = [
@@ -2276,7 +2095,6 @@ pyasn1 = ">=0.1.3"
 name = "s3transfer"
 version = "0.2.1"
 description = "An Amazon S3 Transfer Manager"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2289,26 +2107,24 @@ botocore = ">=1.12.36,<2.0.0"
 
 [[package]]
 name = "setuptools"
-version = "68.0.0"
+version = "68.1.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+    {file = "setuptools-68.1.0-py3-none-any.whl", hash = "sha256:e13e1b0bc760e9b0127eda042845999b2f913e12437046e663b833aa96d89715"},
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 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -2320,7 +2136,6 @@ files = [
 name = "sniffio"
 version = "1.3.0"
 description = "Sniff out which async library your code is running under"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2330,81 +2145,30 @@ files = [
 
 [[package]]
 name = "sqlalchemy"
-version = "1.4.49"
+version = "1.3.3"
 description = "Database Abstraction Library"
-category = "main"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
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-]
-
-[package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and platform_machine == \"aarch64\" or python_version >= \"3\" and platform_machine == \"ppc64le\" or python_version >= \"3\" and platform_machine == \"x86_64\" or python_version >= \"3\" and platform_machine == \"amd64\" or python_version >= \"3\" and platform_machine == \"AMD64\" or python_version >= \"3\" and platform_machine == \"win32\" or python_version >= \"3\" and platform_machine == \"WIN32\""}
+    {file = "SQLAlchemy-1.3.3.tar.gz", hash = "sha256:91c54ca8345008fceaec987e10924bf07dcab36c442925357e5a467b36a38319"},
+]
 
 [package.extras]
-aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
-aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"]
-asyncio = ["greenlet (!=0.4.17)"]
-asyncmy = ["asyncmy (>=0.2.3,!=0.2.4)", "greenlet (!=0.4.17)"]
-mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2)"]
 mssql = ["pyodbc"]
 mssql-pymssql = ["pymssql"]
 mssql-pyodbc = ["pyodbc"]
-mypy = ["mypy (>=0.910)", "sqlalchemy2-stubs"]
-mysql = ["mysqlclient (>=1.4.0)", "mysqlclient (>=1.4.0,<2)"]
-mysql-connector = ["mysql-connector-python"]
-oracle = ["cx-oracle (>=7)", "cx-oracle (>=7,<8)"]
-postgresql = ["psycopg2 (>=2.7)"]
-postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
-postgresql-pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"]
+mysql = ["mysqlclient"]
+oracle = ["cx_oracle"]
+postgresql = ["psycopg2"]
+postgresql-pg8000 = ["pg8000"]
 postgresql-psycopg2binary = ["psycopg2-binary"]
 postgresql-psycopg2cffi = ["psycopg2cffi"]
-pymysql = ["pymysql", "pymysql (<1)"]
-sqlcipher = ["sqlcipher3-binary"]
+pymysql = ["pymysql"]
 
 [[package]]
 name = "storageclient"
 version = "0.1.0"
-description = ""
-category = "main"
+description = "Python client to interact with ceph/cleversafe backend"
 optional = false
 python-versions = "*"
 files = []
@@ -2432,7 +2196,6 @@ resolved_reference = "4d39265d6e478acd5e1afe6e5dc722418f887d78"
 name = "types-pyyaml"
 version = "6.0.12.11"
 description = "Typing stubs for PyYAML"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2444,7 +2207,6 @@ files = [
 name = "typing-extensions"
 version = "4.7.1"
 description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2456,7 +2218,6 @@ files = [
 name = "uritemplate"
 version = "3.0.1"
 description = "URI templates"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2468,7 +2229,6 @@ files = [
 name = "urllib3"
 version = "1.25.11"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
 files = [
@@ -2485,7 +2245,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 name = "userdatamodel"
 version = "2.4.3"
 description = ""
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2500,7 +2259,6 @@ sqlalchemy = ">=1.3.3"
 name = "websocket-client"
 version = "1.6.1"
 description = "WebSocket client for Python with low level API options"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2515,14 +2273,13 @@ test = ["websockets"]
 
 [[package]]
 name = "werkzeug"
-version = "2.3.6"
+version = "2.3.7"
 description = "The comprehensive WSGI web application library."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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-    {file = "Werkzeug-2.3.6.tar.gz", hash = "sha256:98c774df2f91b05550078891dee5f0eb0cb797a522c757a2452b9cee5b202330"},
+    {file = "werkzeug-2.3.7-py3-none-any.whl", hash = "sha256:effc12dba7f3bd72e605ce49807bbe692bd729c3bb122a3b91747a6ae77df528"},
+    {file = "werkzeug-2.3.7.tar.gz", hash = "sha256:2b8c0e447b4b9dbcc85dd97b6eeb4dcbaf6c8b6c3be0bd654e25553e0a2157d8"},
 ]
 
 [package.dependencies]
@@ -2535,7 +2292,6 @@ watchdog = ["watchdog (>=2.3)"]
 name = "wrapt"
 version = "1.15.0"
 description = "Module for decorators, wrappers and monkey patching."
-category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -2620,7 +2376,6 @@ files = [
 name = "wtforms"
 version = "3.0.1"
 description = "Form validation and rendering for Python web development."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2638,7 +2393,6 @@ email = ["email-validator"]
 name = "xmltodict"
 version = "0.13.0"
 description = "Makes working with XML feel like you are working with JSON"
-category = "main"
 optional = false
 python-versions = ">=3.4"
 files = [
@@ -2650,7 +2404,6 @@ files = [
 name = "zipp"
 version = "3.16.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2665,4 +2418,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<4.0.0"
-content-hash = "51de5ee8af009da748bd7304d5266648018eb755a9644cad295c053b7b250344"
+content-hash = "e083b2f07df1a0dc37da9c1d6b637a47b23c3fbe2840c92ccff902d34df13c53"
diff --git a/pyproject.toml b/pyproject.toml
index 699fcfd96..a7d367c1b 100755
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -54,7 +54,7 @@ python-jose = "^2.0.2"
 pyyaml = "^5.1"
 requests = ">=2.18.0"
 retry = "^0.9.2"
-sqlalchemy = "^1.3.3"
+sqlalchemy = "1.3.3"
 storageclient = {git = "https://github.com/uc-cdis/storage-client", rev = "1.0.2"}
 userdatamodel = ">=2.4.3"
 werkzeug = ">=2.2.3"