From 214d765742e4991d216857224716a4cac444bf25 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Wed, 31 May 2023 20:50:09 -0500
Subject: [PATCH 01/26] feat(PXP-10776): Cascading Authorization

Usersync updated to grant access to child studies if a user is granted access
to a parent study.

Parent/Child study relationships are defined by
dbGaP.parent_to_child_studies_mapping property in the fence-config.yaml.
---
 fence/config-default.yaml                     | 19 +++++
 fence/sync/sync_users.py                      | 57 +++++++++++++++
 .../csv/authentication_file_phs001179.txt     |  3 +
 tests/dbgap_sync/test_user_sync.py            | 70 +++++++++++++++++--
 4 files changed, 145 insertions(+), 4 deletions(-)
 create mode 100644 tests/dbgap_sync/data/csv/authentication_file_phs001179.txt

diff --git a/fence/config-default.yaml b/fence/config-default.yaml
index 823bfb593..195f99227 100755
--- a/fence/config-default.yaml
+++ b/fence/config-default.yaml
@@ -532,6 +532,25 @@ dbGaP:
     #
     # NOTE: when this is "false" the above would become "phs000123"
     parse_consent_code: true
+    # When a dbGaP study authorizes access to child studies through a parent study ID,
+    # you can use this mapping. When a user gets access to the first ID, they automatically
+    # get access to the list of projects to the right.
+    #
+    # There's usually a note in the "Authorized Access" section of the dbGaP study page
+    # (https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001843.v1.p2)
+    # along the lines of:
+    # Note: The data for this study is collected as a substudy of
+    #       phs001194.v3.p2. dbGaP Authorized Access requests for
+    #       this data should be made for study phs001194.v3.p2 and
+    #       not phs001843.v1.p2
+    #
+    # There are also other dbGaP APIs that expose this parent/child mapping.
+    # Example: https://dbgap.ncbi.nlm.nih.gov/ss/dbgapssws.cgi?request=Study&phs=000571&v=6
+    #
+    # If `parse_consent_code` is true, then a user will be given access to the exact
+    # same consent codes in the child studies
+    parent_to_child_studies_mapping:
+      # 'phs001194': ['phs000571', 'phs001843']
     # A consent of "c999" can indicate access to that study's "exchange area data"
     # and when a user has access to one study's exchange area data, they
     # have access to the parent study's "common exchange area data" that is not study
diff --git a/fence/sync/sync_users.py b/fence/sync/sync_users.py
index dc6f68893..b6ea83888 100644
--- a/fence/sync/sync_users.py
+++ b/fence/sync/sync_users.py
@@ -336,6 +336,9 @@ def __init__(
         self.is_sync_from_dbgap_server = is_sync_from_dbgap_server
         self.dbGaP = dbGaP
         self.parse_consent_code = dbGaP[0].get("parse_consent_code", True)
+        self.parent_to_child_studies_mapping = dbGaP[0].get(
+            "parent_to_child_studies_mapping", {}
+        )
         self.session = db_session
         self.driver = get_SQLAlchemyDriver(DB)
         self.project_mapping = project_mapping or {}
@@ -622,6 +625,15 @@ def _parse_csv(self, file_dict, sess, dbgap_config={}, encrypted=True):
 
                         dbgap_project += "." + consent_code
 
+                    self._add_children_for_dbgap_project(
+                        dbgap_project,
+                        privileges,
+                        username,
+                        sess,
+                        user_projects,
+                        dbgap_config,
+                    )
+
                     display_name = row.get("user name") or ""
                     tags = {"dbgap_role": row.get("role") or ""}
 
@@ -651,6 +663,41 @@ def _parse_csv(self, file_dict, sess, dbgap_config={}, encrypted=True):
 
         return user_projects, user_info
 
+    def _has_children(self, dbgap_project):
+        parent_phsid = dbgap_project.split(".")[0]
+        return parent_phsid in self.parent_to_child_studies_mapping
+
+    def _add_children_for_dbgap_project(
+        self, dbgap_project, privileges, username, sess, user_projects, dbgap_config
+    ):
+        parent_phsid = dbgap_project
+        child_suffix = ""
+        if self.parse_consent_code and re.match(
+            config["DBGAP_ACCESSION_WITH_CONSENT_REGEX"], dbgap_project
+        ):
+            phsid_parts = dbgap_project.split(".")
+            parent_phsid = phsid_parts[0]
+            child_suffix = "." + phsid_parts[1]  # include parent consent code
+
+        if parent_phsid not in self.parent_to_child_studies_mapping:
+            return
+
+        self.logger.info(
+            f"found parent study {parent_phsid} and Fence "
+            "is configured to provide additional access to child studies. Giving user "
+            f"{username} {privileges} privileges in projects: "
+            f"{{k + child_suffix: v + child_suffix for k, v in self.parent_to_child_studies_mapping.items()}}."
+        )
+        for child_study in self.parent_to_child_studies_mapping[parent_phsid]:
+            self._add_dbgap_project_for_user(
+                child_study + child_suffix,
+                privileges,
+                username,
+                sess,
+                user_projects,
+                dbgap_config,
+            )
+
     def _add_dbgap_project_for_user(
         self, dbgap_project, privileges, username, sess, user_projects, dbgap_config
     ):
@@ -1636,6 +1683,16 @@ def _grant_all_consents_to_c999_users(
                 consent_mapping.setdefault(accession_number["phsid"], set()).add(
                     ".".join([accession_number["phsid"], accession_number["consent"]])
                 )
+                if self._has_children(accession_number["phsid"]):
+                    child_phs_list = self.parent_to_child_studies_mapping[
+                        accession_number["phsid"]
+                    ]
+                    for child_phs in child_phs_list:
+                        consent_mapping.setdefault(child_phs, set()).add(
+                            ".".join(
+                                [child_phs, accession_number["consent"]]
+                            )  # Assign parent consent to child study
+                        )
 
         self.logger.debug(f"consent mapping: {consent_mapping}")
 
diff --git a/tests/dbgap_sync/data/csv/authentication_file_phs001179.txt b/tests/dbgap_sync/data/csv/authentication_file_phs001179.txt
new file mode 100644
index 000000000..941411a75
--- /dev/null
+++ b/tests/dbgap_sync/data/csv/authentication_file_phs001179.txt
@@ -0,0 +1,3 @@
+user name, login, authority, role, email, phone, status, phsid, permission set, created, updated, expires, downloader for
+USER KYLE,TESTPARENTAUTHZ,eRA,PI,kyle@com,"123-456-789",active,phs001179.v9.p8.c1,"General Research Use",2013-03-19 12:32:12.600,2015-05-14 16:01:16.923,2016-05-14 00:00:00.000,
+USER KYLE2,TESTPARENTAUTHZ999,eRA,PI,kyle@com,"123-456-789",active,phs001179.v9.p8.c999,"General Research Use",2013-03-19 12:32:12.600,2015-05-14 16:01:16.923,2016-05-14 00:00:00.000,
diff --git a/tests/dbgap_sync/test_user_sync.py b/tests/dbgap_sync/test_user_sync.py
index af885b582..465a06ab8 100644
--- a/tests/dbgap_sync/test_user_sync.py
+++ b/tests/dbgap_sync/test_user_sync.py
@@ -82,12 +82,14 @@ def test_sync_incorrect_user_yaml_file(syncer, monkeypatch, db_session):
 @pytest.mark.parametrize("allow_non_dbgap_whitelist", [False, True])
 @pytest.mark.parametrize("syncer", ["google", "cleversafe"], indirect=True)
 @pytest.mark.parametrize("parse_consent_code_config", [False, True])
+@pytest.mark.parametrize("parent_to_child_studies_mapping", [False, True])
 def test_sync(
     syncer,
     db_session,
     allow_non_dbgap_whitelist,
     storage_client,
     parse_consent_code_config,
+    parent_to_child_studies_mapping,
     monkeypatch,
 ):
     # patch the sync to use the parameterized config value
@@ -98,13 +100,23 @@ def test_sync(
     monkeypatch.setitem(
         syncer.dbGaP[2], "allow_non_dbGaP_whitelist", allow_non_dbgap_whitelist
     )
+    if parent_to_child_studies_mapping:
+        mapping = {
+            "phs001179": ["phs000179", "phs000178"],
+        }
+        monkeypatch.setitem(
+            syncer.dbGaP[0],
+            "parent_to_child_studies_mapping",
+            mapping,
+        )
+        monkeypatch.setattr(syncer, "parent_to_child_studies_mapping", mapping)
 
     syncer.sync()
 
     users = db_session.query(models.User).all()
 
-    # 5 from user.yaml, 4 from fake dbgap SFTP
-    assert len(users) == 9
+    # 5 from user.yaml, 6 from fake dbgap SFTP
+    assert len(users) == 11
 
     if parse_consent_code_config:
         if allow_non_dbgap_whitelist:
@@ -167,6 +179,33 @@ def test_sync(
                     "phs000178.c1": ["read", "read-storage"],
                 },
             )
+            if parent_to_child_studies_mapping:
+                user = models.query_for_user(
+                    session=db_session, username="TESTPARENTAUTHZ"
+                )
+                assert equal_project_access(
+                    user.project_access,
+                    {
+                        "phs000178.c1": ["read", "read-storage"],
+                        "phs000179.c1": ["read", "read-storage"],
+                        "phs001179.c1": ["read", "read-storage"],
+                    },
+                )
+                user = models.query_for_user(
+                    session=db_session, username="TESTPARENTAUTHZ999"
+                )
+                assert equal_project_access(
+                    user.project_access,
+                    {
+                        "phs000178.c1": ["read", "read-storage"],
+                        "phs000178.c2": ["read", "read-storage"],
+                        "phs000178.c999": ["read", "read-storage"],
+                        "phs000179.c1": ["read", "read-storage"],
+                        "phs000179.c999": ["read", "read-storage"],
+                        "phs001179.c999": ["read", "read-storage"],
+                        "phs001179.c1": ["read", "read-storage"],
+                    },
+                )
     else:
         if allow_non_dbgap_whitelist:
             user = models.query_for_user(session=db_session, username="TESTUSERD")
@@ -230,6 +269,29 @@ def test_sync(
                     "phs000179": ["read", "read-storage"],
                 },
             )
+            if parent_to_child_studies_mapping:
+                user = models.query_for_user(
+                    session=db_session, username="TESTPARENTAUTHZ"
+                )
+                assert equal_project_access(
+                    user.project_access,
+                    {
+                        "phs000178": ["read", "read-storage"],
+                        "phs000179": ["read", "read-storage"],
+                        "phs001179": ["read", "read-storage"],
+                    },
+                )
+                user = models.query_for_user(
+                    session=db_session, username="TESTPARENTAUTHZ999"
+                )
+                assert equal_project_access(
+                    user.project_access,
+                    {
+                        "phs000178": ["read", "read-storage"],
+                        "phs000179": ["read", "read-storage"],
+                        "phs001179": ["read", "read-storage"],
+                    },
+                )
 
     user = models.query_for_user(session=db_session, username="TESTUSERD")
     assert user.display_name == "USER D"
@@ -908,8 +970,8 @@ def test_user_sync_with_visa_sync_job(
 
     users_after = db_session.query(models.User).all()
 
-    # 5 from user.yaml, 4 from fake dbgap SFTP
-    assert len(users_after) == 9
+    # 5 from user.yaml, 6 from fake dbgap SFTP
+    assert len(users_after) == 11
 
     for user in users_after:
         if user.username in setup_info["usernames_to_ras_subjects"]:

From 0b01fbffae4628b04984182281e21e8258919984 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Wed, 14 Jun 2023 17:03:09 -0500
Subject: [PATCH 02/26] To Hold

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 02d665c50..d87eab482 100755
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "fence"
-version = "9.0.0"
+version = "9.2.0"
 description = "Gen3 AuthN/AuthZ OIDC Service"
 authors = ["CTDS UChicago <cdis@uchicago.edu>"]
 license = "Apache-2.0"

From 11bcacd9a386c1deb57391057a98f5ee2822c2c4 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Mon, 10 Jul 2023 20:33:20 -0500
Subject: [PATCH 03/26] Merges parent_to_child_studies_mappings from multiple
 dbGaP configurations

Validates that no duplicate parent keys can exist across multiple dbGaP configs

Updates sync_users to respect each dbGaP configs' parse_consent_code
---
 fence/config.py                    |  21 ++++-
 fence/sync/sync_users.py           | 127 ++++++++++-------------------
 tests/dbgap_sync/test_user_sync.py |  17 ++--
 tests/test_app_config.py           |  22 ++++-
 4 files changed, 90 insertions(+), 97 deletions(-)

diff --git a/fence/config.py b/fence/config.py
index ea085e50f..f252deb53 100644
--- a/fence/config.py
+++ b/fence/config.py
@@ -130,18 +130,35 @@ def post_process(self):
                     "BILLING_PROJECT_FOR_SA_CREDS or BILLING_PROJECT_FOR_SIGNED_URLS is set to a non-None value. "
                     "SESSION_ALLOWED_SCOPES includes `google_credentials`. Removing "
                     "`google_credentials` from USER_ALLOWED_SCOPES as this could allow "
-                    "end-users to indescriminently bill our default project. Clients are inheritently "
+                    "end-users to indiscriminately bill our default project. Clients are inherently "
                     "trusted, so we do not restrict this scope for clients."
                 )
                 self._configs["SESSION_ALLOWED_SCOPES"].remove("google_credentials")
 
         if (
             not self._configs["ENABLE_VISA_UPDATE_CRON"]
-            and self._configs["GLOBAL_PARSE_VISAS_ON_LOGIN"] != False
+            and self._configs["GLOBAL_PARSE_VISAS_ON_LOGIN"] is not False
         ):
             raise Exception(
                 "Visa parsing on login is enabled but `ENABLE_VISA_UPDATE_CRON` is disabled!"
             )
 
+        self._validate_parent_child_studies(self._configs["dbGaP"])
+
+    @staticmethod
+    def _validate_parent_child_studies(dbgap_configs):
+        all_parent_studies = set()
+        for dbgap_config in dbgap_configs:
+            parent_studies = dbgap_config.get(
+                "parent_to_child_studies_mapping", {}
+            ).keys()
+            conflicts = parent_studies & all_parent_studies
+            if len(conflicts) > 0:
+                raise Exception(
+                    f"{conflicts} are duplicate parent study ids found in parent_to_child_studies_mapping for "
+                    f"multiple dbGaP configurations."
+                )
+            all_parent_studies.update(parent_studies)
+
 
 config = FenceConfig(DEFAULT_CFG_PATH)
diff --git a/fence/sync/sync_users.py b/fence/sync/sync_users.py
index b6ea83888..ea3910f2f 100644
--- a/fence/sync/sync_users.py
+++ b/fence/sync/sync_users.py
@@ -335,10 +335,6 @@ def __init__(
         self.sync_from_local_yaml_file = sync_from_local_yaml_file
         self.is_sync_from_dbgap_server = is_sync_from_dbgap_server
         self.dbGaP = dbGaP
-        self.parse_consent_code = dbGaP[0].get("parse_consent_code", True)
-        self.parent_to_child_studies_mapping = dbGaP[0].get(
-            "parent_to_child_studies_mapping", {}
-        )
         self.session = db_session
         self.driver = get_SQLAlchemyDriver(DB)
         self.project_mapping = project_mapping or {}
@@ -355,7 +351,11 @@ def __init__(
         self.auth_source = defaultdict(set)
         # auth_source used for logging. username : [source1, source2]
         self.visa_types = config.get("USERSYNC", {}).get("visa_types", {})
-
+        self.parent_to_child_studies_mapping = {}
+        for dbgap_config in dbGaP:
+            self.parent_to_child_studies_mapping.update(
+                dbgap_config.get("parent_to_child_studies_mapping", {})
+            )
         if storage_credentials:
             self.storage_manager = StorageManager(
                 storage_credentials, logger=self.logger
@@ -458,6 +458,11 @@ def _get_from_ftp_with_proxy(self, server, path):
         )
         os.system(execstr)
 
+    def _get_parse_consent_code(self, dbgap_config={}):
+        return dbgap_config.get(
+            "parse_consent_code", True
+        )  # Should this really be true?
+
     def _parse_csv(self, file_dict, sess, dbgap_config={}, encrypted=True):
         """
         parse csv files to python dict
@@ -517,8 +522,9 @@ def _parse_csv(self, file_dict, sess, dbgap_config={}, encrypted=True):
         study_common_exchange_areas = dbgap_config.get(
             "study_common_exchange_areas", {}
         )
+        parse_consent_code = self._get_parse_consent_code(dbgap_config)
 
-        if self.parse_consent_code and enable_common_exchange_area_access:
+        if parse_consent_code and enable_common_exchange_area_access:
             self.logger.info(
                 f"using study to common exchange area mapping: {study_common_exchange_areas}"
             )
@@ -588,7 +594,7 @@ def _parse_csv(self, file_dict, sess, dbgap_config={}, encrypted=True):
                             )
                         )
                         continue
-                    if len(phsid) > 1 and self.parse_consent_code:
+                    if len(phsid) > 1 and parse_consent_code:
                         consent_code = phsid[-1]
 
                         # c999 indicates full access to all consents and access
@@ -663,21 +669,26 @@ def _parse_csv(self, file_dict, sess, dbgap_config={}, encrypted=True):
 
         return user_projects, user_info
 
-    def _has_children(self, dbgap_project):
-        parent_phsid = dbgap_project.split(".")[0]
-        return parent_phsid in self.parent_to_child_studies_mapping
+    def _get_children(self, dbgap_project):
+        return self.parent_to_child_studies_mapping.get(dbgap_project.split(".")[0])
 
     def _add_children_for_dbgap_project(
         self, dbgap_project, privileges, username, sess, user_projects, dbgap_config
     ):
+        """
+        Adds the configured child studies for the given dbgap_project, adding it to the provided user_projects. If
+        parse_consent_code is true, then the consents granted in the provided dbgap_project will also be granted to the
+        child studies.
+        """
         parent_phsid = dbgap_project
+        parse_consent_code = self._get_parse_consent_code(dbgap_config)
         child_suffix = ""
-        if self.parse_consent_code and re.match(
+        if parse_consent_code and re.match(
             config["DBGAP_ACCESSION_WITH_CONSENT_REGEX"], dbgap_project
         ):
-            phsid_parts = dbgap_project.split(".")
-            parent_phsid = phsid_parts[0]
-            child_suffix = "." + phsid_parts[1]  # include parent consent code
+            parent_phsid_parts = dbgap_project.split(".")
+            parent_phsid = parent_phsid_parts[0]
+            child_suffix = "." + parent_phsid_parts[1]
 
         if parent_phsid not in self.parent_to_child_studies_mapping:
             return
@@ -688,7 +699,8 @@ def _add_children_for_dbgap_project(
             f"{username} {privileges} privileges in projects: "
             f"{{k + child_suffix: v + child_suffix for k, v in self.parent_to_child_studies_mapping.items()}}."
         )
-        for child_study in self.parent_to_child_studies_mapping[parent_phsid]:
+        child_studies = self.parent_to_child_studies_mapping.get(parent_phsid, [])
+        for child_study in child_studies:
             self._add_dbgap_project_for_user(
                 child_study + child_suffix,
                 privileges,
@@ -752,7 +764,7 @@ def sync_two_phsids_dict(
         phsids2_overrides_phsids1=True,
     ):
         """
-        Merge pshid1 into phsids2. If `phsids2_overrides_phsids1`, values in
+        Merge phsids1 into phsids2. If `phsids2_overrides_phsids1`, values in
         phsids1 are overriden by values in phsids2. phsids2 ends up containing
         the merged dict (see explanation below).
         `source1` and `source2`: for logging.
@@ -1449,7 +1461,7 @@ def _process_user_projects(
                 phsid = project.split(".")
                 dbgap_project = phsid[0]
                 privileges = user_projects[username][project]
-                if len(phsid) > 1 and self.parse_consent_code:
+                if len(phsid) > 1 and self._get_parse_consent_code(dbgap_config):
                     consent_code = phsid[-1]
 
                     # c999 indicates full access to all consents and access
@@ -1595,10 +1607,11 @@ def _sync(self, sess):
         # Note: if there are multiple dbgap sftp servers configured
         # this parameter is always from the config for the first dbgap sftp server
         # not any additional ones
-        if self.parse_consent_code:
-            self._grant_all_consents_to_c999_users(
-                user_projects, user_yaml.project_to_resource
-            )
+        for dbgap_config in self.dbGaP:
+            if self._get_parse_consent_code(dbgap_config):
+                self._grant_all_consents_to_c999_users(
+                    user_projects, user_yaml.project_to_resource
+                )
 
         google_update_ex = None
 
@@ -1683,11 +1696,9 @@ def _grant_all_consents_to_c999_users(
                 consent_mapping.setdefault(accession_number["phsid"], set()).add(
                     ".".join([accession_number["phsid"], accession_number["consent"]])
                 )
-                if self._has_children(accession_number["phsid"]):
-                    child_phs_list = self.parent_to_child_studies_mapping[
-                        accession_number["phsid"]
-                    ]
-                    for child_phs in child_phs_list:
+                children = self._get_children(accession_number["phsid"])
+                if children:
+                    for child_phs in children:
                         consent_mapping.setdefault(child_phs, set()).add(
                             ".".join(
                                 [child_phs, accession_number["consent"]]
@@ -2356,63 +2367,6 @@ def _pick_sync_type(self, visa):
 
         return sync_client
 
-    def parse_user_visas(self, db_session):
-        """
-        Retrieve all visas from fence db and parse to python dict
-
-        Return:
-            Tuple[[dict, dict]]:
-                (user_project, user_info) where user_project is a mapping from
-                usernames to project permissions and user_info is a mapping
-                from usernames to user details, such as email
-
-        Example:
-
-            (
-                {
-                    username: {
-                        'project1': {'read-storage','write-storage'},
-                        'project2': {'read-storage'},
-                    }
-                },
-                {
-                    username: {
-                        'email': 'email@mail.com',
-                        'display_name': 'display name',
-                        'phone_number': '123-456-789',
-                        'tags': {'dbgap_role': 'PI'}
-                    }
-                },
-            )
-
-        """
-        user_projects = dict()
-        user_info = dict()
-
-        users = db_session.query(User).all()
-
-        for user in users:
-            projects = {}
-            info = {}
-            if user.ga4gh_visas_v1:
-                for visa in user.ga4gh_visas_v1:
-                    project = {}
-                    visa_type = self._pick_sync_type(visa)
-                    encoded_visa = visa.ga4gh_visa
-                    project, info = visa_type._parse_single_visa(
-                        user,
-                        encoded_visa,
-                        visa.expires,
-                        self.parse_consent_code,
-                    )
-                    projects = {**projects, **project}
-                if projects:
-                    self.auth_source[user.username].add("visas")
-                user_projects[user.username] = projects
-                user_info[user.username] = info
-
-        return (user_projects, user_info)
-
     def sync_single_user_visas(self, user, ga4gh_visas, sess=None, expires=None):
         """
         Sync a single user's visas during login or DRS/data access
@@ -2434,6 +2388,7 @@ def sync_single_user_visas(self, user, ga4gh_visas, sess=None, expires=None):
         """
         self.ras_sync_client = RASVisa(logger=self.logger)
         dbgap_config = self.dbGaP[0]
+        parse_consent_code = self._get_parse_consent_code(dbgap_config)
         enable_common_exchange_area_access = dbgap_config.get(
             "enable_common_exchange_area_access", False
         )
@@ -2466,7 +2421,7 @@ def sync_single_user_visas(self, user, ga4gh_visas, sess=None, expires=None):
                     user,
                     encoded_visa,
                     visa.expires,
-                    self.parse_consent_code,
+                    parse_consent_code,
                 )
             except Exception:
                 self.logger.warning(
@@ -2482,7 +2437,7 @@ def sync_single_user_visas(self, user, ga4gh_visas, sess=None, expires=None):
 
         user_projects = self.parse_projects(user_projects)
 
-        if self.parse_consent_code and enable_common_exchange_area_access:
+        if parse_consent_code and enable_common_exchange_area_access:
             self.logger.info(
                 f"using study to common exchange area mapping: {study_common_exchange_areas}"
             )
@@ -2495,7 +2450,7 @@ def sync_single_user_visas(self, user, ga4gh_visas, sess=None, expires=None):
             sess,
         )
 
-        if self.parse_consent_code:
+        if parse_consent_code:
             self._grant_all_consents_to_c999_users(
                 user_projects, user_yaml.project_to_resource
             )
diff --git a/tests/dbgap_sync/test_user_sync.py b/tests/dbgap_sync/test_user_sync.py
index 465a06ab8..ab638723a 100644
--- a/tests/dbgap_sync/test_user_sync.py
+++ b/tests/dbgap_sync/test_user_sync.py
@@ -93,13 +93,14 @@ def test_sync(
     monkeypatch,
 ):
     # patch the sync to use the parameterized config value
-    monkeypatch.setitem(
-        syncer.dbGaP[0], "parse_consent_code", parse_consent_code_config
-    )
-    monkeypatch.setattr(syncer, "parse_consent_code", parse_consent_code_config)
+    for dbgap_config in syncer.dbGaP:
+        monkeypatch.setitem(
+            dbgap_config, "parse_consent_code", parse_consent_code_config
+        )
     monkeypatch.setitem(
         syncer.dbGaP[2], "allow_non_dbGaP_whitelist", allow_non_dbgap_whitelist
     )
+
     if parent_to_child_studies_mapping:
         mapping = {
             "phs001179": ["phs000179", "phs000178"],
@@ -334,10 +335,10 @@ def test_dbgap_consent_codes(
         "enable_common_exchange_area_access",
         enable_common_exchange_area,
     )
-    monkeypatch.setattr(syncer, "parse_consent_code", parse_consent_code_config)
-    monkeypatch.setitem(
-        syncer.dbGaP[0], "parse_consent_code", parse_consent_code_config
-    )
+    for dbgap_config in syncer.dbGaP:
+        monkeypatch.setitem(
+            dbgap_config, "parse_consent_code", parse_consent_code_config
+        )
 
     monkeypatch.setattr(syncer, "project_mapping", {})
 
diff --git a/tests/test_app_config.py b/tests/test_app_config.py
index 283555f90..3c3af9fd0 100755
--- a/tests/test_app_config.py
+++ b/tests/test_app_config.py
@@ -9,6 +9,7 @@
 from azure.core.exceptions import ResourceNotFoundError
 import fence
 from fence import app_init, _check_azure_storage
+from fence.config import FenceConfig
 from tests import test_settings
 from tests.conftest import FakeBlobServiceClient
 
@@ -58,7 +59,7 @@ def test_check_azure_storage_resource_not_found_error():
 
 def test_app_config():
     """
-    Test app_init call using the 'test-fence-config.yaml'
+    Test app_init call using the "test-fence-config.yaml"
     This includes the check to verify underlying storage
     """
 
@@ -118,3 +119,22 @@ def test_app_config():
 
     for patcher in patchers:
         patcher.stop()
+
+
+def test_app_config_parent_child_study_mapping(monkeypatch):
+    invalid_dbgap_configs = [
+        {
+            "parent_to_child_studies_mapping": {
+                "phs001194": ["phs000571", "phs001843"],
+                "phs001193": ["phs000572", "phs001844"],
+            }
+        },
+        {
+            "parent_to_child_studies_mapping": {
+                "phs001194": ["phs0015623"],
+                "phs001192": ["phs0001", "phs002"],
+            }
+        },
+    ]
+    with pytest.raises(Exception):
+        FenceConfig._validate_parent_child_studies(invalid_dbgap_configs)

From 2f2670980b5b1b91166248a43189874e1a12db9e Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Mon, 17 Jul 2023 17:17:23 -0500
Subject: [PATCH 04/26] Debugging

---
 fence/config.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/fence/config.py b/fence/config.py
index f252deb53..a7ae163c3 100644
--- a/fence/config.py
+++ b/fence/config.py
@@ -148,6 +148,7 @@ def post_process(self):
     @staticmethod
     def _validate_parent_child_studies(dbgap_configs):
         all_parent_studies = set()
+        logger.info(dbgap_configs)
         for dbgap_config in dbgap_configs:
             parent_studies = dbgap_config.get(
                 "parent_to_child_studies_mapping", {}

From 8fbf3f8bec492be83ef0ca3d3329b6e43f62b854 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Mon, 17 Jul 2023 17:26:39 -0500
Subject: [PATCH 05/26] Fix dbgap config validation to handle one dbgap server
 vs multiple

---
 fence/config.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/fence/config.py b/fence/config.py
index a7ae163c3..c7455e935 100644
--- a/fence/config.py
+++ b/fence/config.py
@@ -147,9 +147,13 @@ def post_process(self):
 
     @staticmethod
     def _validate_parent_child_studies(dbgap_configs):
+        if isinstance(dbgap_configs, list):
+            configs = dbgap_configs
+        else:
+            configs = [dbgap_configs]
+
         all_parent_studies = set()
-        logger.info(dbgap_configs)
-        for dbgap_config in dbgap_configs:
+        for dbgap_config in configs:
             parent_studies = dbgap_config.get(
                 "parent_to_child_studies_mapping", {}
             ).keys()

From 6e2abea1b0a33344a6e992448fb2a59e5f73b77d Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Wed, 26 Jul 2023 14:15:01 -0500
Subject: [PATCH 06/26] Upgrading cryptography to 41.0.2 to address snyk
 finding

---
 poetry.lock    | 827 +++++++++++++++++++++----------------------------
 pyproject.toml |   2 +-
 2 files changed, 362 insertions(+), 467 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index a1c4498b8..38cf1382d 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
 
 [[package]]
 name = "addict"
 version = "2.4.0"
 description = "Addict is a dictionary whose items can be set using both attribute and item syntax."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -14,14 +13,13 @@ files = [
 
 [[package]]
 name = "alembic"
-version = "1.10.4"
+version = "1.11.1"
 description = "A database migration tool for SQLAlchemy."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "alembic-1.10.4-py3-none-any.whl", hash = "sha256:43942c3d4bf2620c466b91c0f4fca136fe51ae972394a0cc8b90810d664e4f5c"},
-    {file = "alembic-1.10.4.tar.gz", hash = "sha256:295b54bbb92c4008ab6a7dcd1e227e668416d6f84b98b3c4446a2bc6214a556b"},
+    {file = "alembic-1.11.1-py3-none-any.whl", hash = "sha256:dc871798a601fab38332e38d6ddb38d5e734f60034baeb8e2db5b642fccd8ab8"},
+    {file = "alembic-1.11.1.tar.gz", hash = "sha256:6a810a6b012c88b33458fceb869aef09ac75d6ace5291915ba7fae44de372c01"},
 ]
 
 [package.dependencies]
@@ -36,7 +34,6 @@ tz = ["python-dateutil"]
 name = "aniso8601"
 version = "9.0.1"
 description = "A library for parsing ISO 8601 strings."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -49,30 +46,29 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
 
 [[package]]
 name = "anyio"
-version = "3.6.2"
+version = "3.7.1"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
-category = "main"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7"
 files = [
-    {file = "anyio-3.6.2-py3-none-any.whl", hash = "sha256:fbbe32bd270d2a2ef3ed1c5d45041250284e31fc0a4df4a5a6071842051a51e3"},
-    {file = "anyio-3.6.2.tar.gz", hash = "sha256:25ea0d673ae30af41a0c442f81cf3b38c7e79fdc7b60335a4c14e05eb0947421"},
+    {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"},
+    {file = "anyio-3.7.1.tar.gz", hash = "sha256:44a3c9aba0f5defa43261a8b3efb97891f2bd7d804e0e1f56419befa1adfc780"},
 ]
 
 [package.dependencies]
+exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 idna = ">=2.8"
 sniffio = ">=1.1"
 
 [package.extras]
-doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"]
-trio = ["trio (>=0.16,<0.22)"]
+doc = ["Sphinx", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.2.2)", "sphinxcontrib-jquery"]
+test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
+trio = ["trio (<0.22)"]
 
 [[package]]
 name = "atomicwrites"
 version = "1.4.1"
 description = "Atomic file writes."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -83,7 +79,6 @@ files = [
 name = "attrs"
 version = "23.1.0"
 description = "Classes Without Boilerplate"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -102,7 +97,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 name = "authlib"
 version = "0.11"
 description = "The ultimate Python library in building OAuth and OpenID Connect servers."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -118,7 +112,6 @@ requests = "*"
 name = "authutils"
 version = "6.2.2"
 description = "Gen3 auth utility functions"
-category = "main"
 optional = false
 python-versions = ">=3.9,<4.0"
 files = [
@@ -142,7 +135,6 @@ flask = ["Flask (>=0.10.1)"]
 name = "aws-xray-sdk"
 version = "0.95"
 description = "The AWS X-Ray SDK for Python (the SDK) enables Python developers to record and emit information from within their applications to the AWS X-Ray service."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -157,14 +149,13 @@ wrapt = "*"
 
 [[package]]
 name = "azure-core"
-version = "1.26.4"
+version = "1.28.0"
 description = "Microsoft Azure Core Library for Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "azure-core-1.26.4.zip", hash = "sha256:075fe06b74c3007950dd93d49440c2f3430fd9b4a5a2756ec8c79454afc989c6"},
-    {file = "azure_core-1.26.4-py3-none-any.whl", hash = "sha256:d9664b4bc2675d72fba461a285ac43ae33abb2967014a955bf136d9703a2ab3c"},
+    {file = "azure-core-1.28.0.zip", hash = "sha256:e9eefc66fc1fde56dab6f04d4e5d12c60754d5a9fa49bdcfd8534fc96ed936bd"},
+    {file = "azure_core-1.28.0-py3-none-any.whl", hash = "sha256:dec36dfc8eb0b052a853f30c07437effec2f9e3e1fc8f703d9bdaa5cfc0043d9"},
 ]
 
 [package.dependencies]
@@ -177,30 +168,28 @@ aio = ["aiohttp (>=3.0)"]
 
 [[package]]
 name = "azure-storage-blob"
-version = "12.16.0"
+version = "12.17.0"
 description = "Microsoft Azure Blob Storage Client Library for Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "azure-storage-blob-12.16.0.zip", hash = "sha256:43b45f19a518a5c6895632f263b3825ebc23574f25cc84b66e1630a6160e466f"},
-    {file = "azure_storage_blob-12.16.0-py3-none-any.whl", hash = "sha256:91bb192b2a97939c4259c72373bac0f41e30810bbc853d5184f0f45904eacafd"},
+    {file = "azure-storage-blob-12.17.0.zip", hash = "sha256:c14b785a17050b30fc326a315bdae6bc4a078855f4f94a4c303ad74a48dc8c63"},
+    {file = "azure_storage_blob-12.17.0-py3-none-any.whl", hash = "sha256:0016e0c549a80282d7b4920c03f2f4ba35c53e6e3c7dbcd2a4a8c8eb3882c1e7"},
 ]
 
 [package.dependencies]
-azure-core = ">=1.26.0,<2.0.0"
+azure-core = ">=1.28.0,<2.0.0"
 cryptography = ">=2.1.4"
 isodate = ">=0.6.1"
-typing-extensions = ">=4.0.1"
+typing-extensions = ">=4.3.0"
 
 [package.extras]
-aio = ["azure-core[aio] (>=1.26.0,<2.0.0)"]
+aio = ["azure-core[aio] (>=1.28.0,<2.0.0)"]
 
 [[package]]
 name = "backoff"
 version = "1.11.1"
 description = "Function decoration for backoff and retry"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -212,7 +201,6 @@ files = [
 name = "bcrypt"
 version = "3.2.2"
 description = "Modern password hashing for your software and your servers"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -240,7 +228,6 @@ typecheck = ["mypy"]
 name = "blinker"
 version = "1.6.2"
 description = "Fast, simple object-to-object and broadcast signaling"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -252,7 +239,6 @@ files = [
 name = "boto"
 version = "2.49.0"
 description = "Amazon Web Services Library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -264,7 +250,6 @@ files = [
 name = "boto3"
 version = "1.9.253"
 description = "The AWS SDK for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -281,7 +266,6 @@ s3transfer = ">=0.2.0,<0.3.0"
 name = "botocore"
 version = "1.12.253"
 description = "Low-level, data-driven core of boto 3."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -299,7 +283,6 @@ urllib3 = {version = ">=1.20,<1.26", markers = "python_version >= \"3.4\""}
 name = "cached-property"
 version = "1.5.2"
 description = "A decorator for caching properties in classes."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -311,7 +294,6 @@ files = [
 name = "cachelib"
 version = "0.2.0"
 description = "A collection of cache libraries in the same API interface."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -323,7 +305,6 @@ files = [
 name = "cachetools"
 version = "4.2.4"
 description = "Extensible memoizing collections and decorators"
-category = "main"
 optional = false
 python-versions = "~=3.5"
 files = [
@@ -335,7 +316,6 @@ files = [
 name = "cdiserrors"
 version = "1.0.0"
 description = "Gen3 shared exceptions and utilities."
-category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -353,7 +333,6 @@ flask = ["Flask (>=1.1.2,<2.0.0)"]
 name = "cdislogging"
 version = "1.0.0"
 description = "Standardized logging tool and format for cdis applications"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -364,7 +343,6 @@ files = [
 name = "cdispyutils"
 version = "2.0.1"
 description = "This package includes several utility Python tools for the Gen3 stack."
-category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -383,7 +361,6 @@ requests = "*"
 name = "cdisutilstest"
 version = "0.2.4"
 description = "Collection of test data and tools"
-category = "dev"
 optional = false
 python-versions = "*"
 files = []
@@ -397,21 +374,19 @@ resolved_reference = "bdfdeb05e45407e839fd954ce6d195d847cd8024"
 
 [[package]]
 name = "certifi"
-version = "2022.12.7"
+version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"},
-    {file = "certifi-2022.12.7.tar.gz", hash = "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3"},
+    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
+    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
 ]
 
 [[package]]
 name = "cffi"
 version = "1.15.1"
 description = "Foreign Function Interface for Python calling C code."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -486,99 +461,97 @@ pycparser = "*"
 
 [[package]]
 name = "charset-normalizer"
-version = "3.1.0"
+version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
-    {file = "charset-normalizer-3.1.0.tar.gz", hash = "sha256:34e0a2f9c370eb95597aae63bf85eb5e96826d81e3dcf88b8886012906f509b5"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:e0ac8959c929593fee38da1c2b64ee9778733cdf03c482c9ff1d508b6b593b2b"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d7fc3fca01da18fbabe4625d64bb612b533533ed10045a2ac3dd194bfa656b60"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:04eefcee095f58eaabe6dc3cc2262f3bcd776d2c67005880894f447b3f2cb9c1"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:20064ead0717cf9a73a6d1e779b23d149b53daf971169289ed2ed43a71e8d3b0"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:1435ae15108b1cb6fffbcea2af3d468683b7afed0169ad718451f8db5d1aff6f"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:c84132a54c750fda57729d1e2599bb598f5fa0344085dbde5003ba429a4798c0"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:75f2568b4189dda1c567339b48cba4ac7384accb9c2a7ed655cd86b04055c795"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:11d3bcb7be35e7b1bba2c23beedac81ee893ac9871d0ba79effc7fc01167db6c"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:891cf9b48776b5c61c700b55a598621fdb7b1e301a550365571e9624f270c203"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:5f008525e02908b20e04707a4f704cd286d94718f48bb33edddc7d7b584dddc1"},
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 [[package]]
 name = "click"
-version = "8.1.3"
+version = "8.1.6"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -588,7 +561,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "codacy-coverage"
 version = "1.3.11"
 description = "Codacy coverage reporter for Python"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -607,7 +579,6 @@ test = ["coverage", "nosetests"]
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -619,7 +590,6 @@ files = [
 name = "coverage"
 version = "5.5"
 description = "Code coverage measurement for Python"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
 files = [
@@ -684,7 +654,6 @@ toml = ["toml"]
 name = "coveralls"
 version = "2.2.0"
 description = "Show coverage stats online via coveralls.io"
-category = "dev"
 optional = false
 python-versions = ">= 3.5"
 files = [
@@ -702,31 +671,34 @@ yaml = ["PyYAML (>=3.10)"]
 
 [[package]]
 name = "cryptography"
-version = "40.0.2"
+version = "41.0.2"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
-category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
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+    {file = "cryptography-41.0.2-pp38-pypy38_pp73-macosx_10_12_x86_64.whl", hash = "sha256:674b669d5daa64206c38e507808aae49904c988fa0a71c935e7006a3e1e83831"},
+    {file = "cryptography-41.0.2-pp38-pypy38_pp73-manylinux_2_28_aarch64.whl", hash = "sha256:7af244b012711a26196450d34f483357e42aeddb04128885d95a69bd8b14b69b"},
+    {file = "cryptography-41.0.2-pp38-pypy38_pp73-manylinux_2_28_x86_64.whl", hash = "sha256:9b6d717393dbae53d4e52684ef4f022444fc1cce3c48c38cb74fca29e1f08eaa"},
+    {file = "cryptography-41.0.2-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:192255f539d7a89f2102d07d7375b1e0a81f7478925b3bc2e0549ebf739dae0e"},
+    {file = "cryptography-41.0.2-pp39-pypy39_pp73-macosx_10_12_x86_64.whl", hash = "sha256:f772610fe364372de33d76edcd313636a25684edb94cee53fd790195f5989d14"},
+    {file = "cryptography-41.0.2-pp39-pypy39_pp73-manylinux_2_28_aarch64.whl", hash = "sha256:b332cba64d99a70c1e0836902720887fb4529ea49ea7f5462cf6640e095e11d2"},
+    {file = "cryptography-41.0.2-pp39-pypy39_pp73-manylinux_2_28_x86_64.whl", hash = "sha256:9a6673c1828db6270b76b22cc696f40cde9043eb90373da5c2f8f2158957f42f"},
+    {file = "cryptography-41.0.2-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:342f3767e25876751e14f8459ad85e77e660537ca0a066e10e75df9c9e9099f0"},
+    {file = "cryptography-41.0.2.tar.gz", hash = "sha256:7d230bf856164de164ecb615ccc14c7fc6de6906ddd5b491f3af90d3514c925c"},
 ]
 
 [package.dependencies]
@@ -735,18 +707,17 @@ cffi = ">=1.12"
 [package.extras]
 docs = ["sphinx (>=5.3.0)", "sphinx-rtd-theme (>=1.1.1)"]
 docstest = ["pyenchant (>=1.6.11)", "sphinxcontrib-spelling (>=4.0.1)", "twine (>=1.12.0)"]
-pep8test = ["black", "check-manifest", "mypy", "ruff"]
-sdist = ["setuptools-rust (>=0.11.4)"]
+nox = ["nox"]
+pep8test = ["black", "check-sdist", "mypy", "ruff"]
+sdist = ["build"]
 ssh = ["bcrypt (>=3.1.5)"]
-test = ["iso8601", "pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-shard (>=0.1.2)", "pytest-subtests", "pytest-xdist"]
+test = ["pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-xdist"]
 test-randomorder = ["pytest-randomly"]
-tox = ["tox"]
 
 [[package]]
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -756,20 +727,18 @@ files = [
 
 [[package]]
 name = "dnspython"
-version = "2.3.0"
+version = "2.4.1"
 description = "DNS toolkit"
-category = "main"
 optional = false
-python-versions = ">=3.7,<4.0"
+python-versions = ">=3.8,<4.0"
 files = [
-    {file = "dnspython-2.3.0-py3-none-any.whl", hash = "sha256:89141536394f909066cabd112e3e1a37e4e654db00a25308b0f130bc3152eb46"},
-    {file = "dnspython-2.3.0.tar.gz", hash = "sha256:224e32b03eb46be70e12ef6d64e0be123a64e621ab4c0822ff6d450d52a540b9"},
+    {file = "dnspython-2.4.1-py3-none-any.whl", hash = "sha256:5b7488477388b8c0b70a8ce93b227c5603bc7b77f1565afe8e729c36c51447d7"},
+    {file = "dnspython-2.4.1.tar.gz", hash = "sha256:c33971c79af5be968bb897e95c2448e11a645ee84d93b265ce0b7aabe5dfdca8"},
 ]
 
 [package.extras]
-curio = ["curio (>=1.2,<2.0)", "sniffio (>=1.1,<2.0)"]
-dnssec = ["cryptography (>=2.6,<40.0)"]
-doh = ["h2 (>=4.1.0)", "httpx (>=0.21.1)", "requests (>=2.23.0,<3.0.0)", "requests-toolbelt (>=0.9.1,<0.11.0)"]
+dnssec = ["cryptography (>=2.6,<42.0)"]
+doh = ["h2 (>=4.1.0)", "httpcore (>=0.17.3)", "httpx (>=0.24.1)"]
 doq = ["aioquic (>=0.9.20)"]
 idna = ["idna (>=2.1,<4.0)"]
 trio = ["trio (>=0.14,<0.23)"]
@@ -779,7 +748,6 @@ wmi = ["wmi (>=1.5.1,<2.0.0)"]
 name = "docker"
 version = "5.0.3"
 description = "A Python library for the Docker Engine API."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -800,7 +768,6 @@ tls = ["cryptography (>=3.4.7)", "idna (>=2.0.0)", "pyOpenSSL (>=17.5.0)"]
 name = "docopt"
 version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -811,7 +778,6 @@ files = [
 name = "docutils"
 version = "0.15.2"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -824,7 +790,6 @@ files = [
 name = "ecdsa"
 version = "0.18.0"
 description = "ECDSA cryptographic signature library (pure python)"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -843,7 +808,6 @@ gmpy2 = ["gmpy2"]
 name = "email-validator"
 version = "1.3.1"
 description = "A robust email address syntax and deliverability validation library."
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -855,11 +819,24 @@ files = [
 dnspython = ">=1.15.0"
 idna = ">=2.0.0"
 
+[[package]]
+name = "exceptiongroup"
+version = "1.1.2"
+description = "Backport of PEP 654 (exception groups)"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "exceptiongroup-1.1.2-py3-none-any.whl", hash = "sha256:e346e69d186172ca7cf029c8c1d16235aa0e04035e5750b4b95039e65204328f"},
+    {file = "exceptiongroup-1.1.2.tar.gz", hash = "sha256:12c3e887d6485d16943a309616de20ae5582633e0a2eda17f4e10fd61c1e8af5"},
+]
+
+[package.extras]
+test = ["pytest (>=6)"]
+
 [[package]]
 name = "flask"
 version = "2.3.2"
 description = "A simple framework for building complex web applications."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -881,30 +858,27 @@ dotenv = ["python-dotenv"]
 
 [[package]]
 name = "flask-cors"
-version = "3.0.10"
+version = "4.0.0"
 description = "A Flask extension adding a decorator for CORS support"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "Flask-Cors-3.0.10.tar.gz", hash = "sha256:b60839393f3b84a0f3746f6cdca56c1ad7426aa738b70d6c61375857823181de"},
-    {file = "Flask_Cors-3.0.10-py2.py3-none-any.whl", hash = "sha256:74efc975af1194fc7891ff5cd85b0f7478be4f7f59fe158102e91abb72bb4438"},
+    {file = "Flask-Cors-4.0.0.tar.gz", hash = "sha256:f268522fcb2f73e2ecdde1ef45e2fd5c71cc48fe03cffb4b441c6d1b40684eb0"},
+    {file = "Flask_Cors-4.0.0-py2.py3-none-any.whl", hash = "sha256:bc3492bfd6368d27cfe79c7821df5a8a319e1a6d5eab277a3794be19bdc51783"},
 ]
 
 [package.dependencies]
 Flask = ">=0.9"
-Six = "*"
 
 [[package]]
 name = "flask-restful"
-version = "0.3.9"
+version = "0.3.10"
 description = "Simple framework for creating REST APIs"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "Flask-RESTful-0.3.9.tar.gz", hash = "sha256:ccec650b835d48192138c85329ae03735e6ced58e9b2d9c2146d6c84c06fa53e"},
-    {file = "Flask_RESTful-0.3.9-py2.py3-none-any.whl", hash = "sha256:4970c49b6488e46c520b325f54833374dc2b98e211f1b272bd4b0c516232afe2"},
+    {file = "Flask-RESTful-0.3.10.tar.gz", hash = "sha256:fe4af2ef0027df8f9b4f797aba20c5566801b6ade995ac63b588abf1a59cec37"},
+    {file = "Flask_RESTful-0.3.10-py2.py3-none-any.whl", hash = "sha256:1cf93c535172f112e080b0d4503a8d15f93a48c88bdd36dd87269bdaf405051b"},
 ]
 
 [package.dependencies]
@@ -920,7 +894,6 @@ docs = ["sphinx"]
 name = "flask-wtf"
 version = "1.1.1"
 description = "Form rendering, validation, and CSRF protection for Flask with WTForms."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -940,7 +913,6 @@ email = ["email-validator"]
 name = "future"
 version = "0.18.3"
 description = "Clean single-source support for Python 3 and 2"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -951,7 +923,6 @@ files = [
 name = "gen3authz"
 version = "1.5.1"
 description = "Gen3 authz client"
-category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -969,7 +940,6 @@ six = ">=1.16.0,<2.0.0"
 name = "gen3cirrus"
 version = "2.0.0"
 description = ""
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -989,7 +959,6 @@ oauth2client = ">=2.0.0,<4.0dev"
 name = "gen3config"
 version = "1.1.0"
 description = "Gen3 Configuration Library"
-category = "main"
 optional = false
 python-versions = "^3.9"
 files = [
@@ -1007,7 +976,6 @@ six = "*"
 name = "gen3users"
 version = "0.6.0"
 description = "Utils for Gen3 commons user management"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1023,7 +991,6 @@ PyYAML = ">=5.1,<6.0"
 name = "google-api-core"
 version = "1.34.0"
 description = "Google API client core library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1046,7 +1013,6 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0dev)"]
 name = "google-api-python-client"
 version = "1.11.0"
 description = "Google API Client Library for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -1066,7 +1032,6 @@ uritemplate = ">=3.0.0,<4dev"
 name = "google-auth"
 version = "1.35.0"
 description = "Google Authentication Library"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 files = [
@@ -1090,7 +1055,6 @@ reauth = ["pyu2f (>=0.1.5)"]
 name = "google-auth-httplib2"
 version = "0.1.0"
 description = "Google Authentication Library: httplib2 transport"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1105,18 +1069,17 @@ six = "*"
 
 [[package]]
 name = "google-cloud-core"
-version = "2.3.2"
+version = "2.3.3"
 description = "Google Cloud API client core library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "google-cloud-core-2.3.2.tar.gz", hash = "sha256:b9529ee7047fd8d4bf4a2182de619154240df17fbe60ead399078c1ae152af9a"},
-    {file = "google_cloud_core-2.3.2-py2.py3-none-any.whl", hash = "sha256:8417acf6466be2fa85123441696c4badda48db314c607cf1e5d543fa8bdc22fe"},
+    {file = "google-cloud-core-2.3.3.tar.gz", hash = "sha256:37b80273c8d7eee1ae816b3a20ae43585ea50506cb0e60f3cf5be5f87f1373cb"},
+    {file = "google_cloud_core-2.3.3-py2.py3-none-any.whl", hash = "sha256:fbd11cad3e98a7e5b0343dc07cb1039a5ffd7a5bb96e1f1e27cee4bda4a90863"},
 ]
 
 [package.dependencies]
-google-api-core = ">=1.31.6,<2.0.0 || >2.3.0,<3.0.0dev"
+google-api-core = ">=1.31.6,<2.0.dev0 || >2.3.0,<3.0.0dev"
 google-auth = ">=1.25.0,<3.0dev"
 
 [package.extras]
@@ -1126,7 +1089,6 @@ grpc = ["grpcio (>=1.38.0,<2.0dev)"]
 name = "google-cloud-storage"
 version = "1.44.0"
 description = "Google Cloud Storage API client library"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 files = [
@@ -1147,7 +1109,6 @@ six = "*"
 name = "google-crc32c"
 version = "1.5.0"
 description = "A python wrapper of the C library 'Google CRC32C'"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1228,7 +1189,6 @@ testing = ["pytest"]
 name = "google-resumable-media"
 version = "2.5.0"
 description = "Utilities for Google Media Downloads and Resumable Uploads"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -1245,27 +1205,25 @@ requests = ["requests (>=2.18.0,<3.0.0dev)"]
 
 [[package]]
 name = "googleapis-common-protos"
-version = "1.59.0"
+version = "1.59.1"
 description = "Common protobufs used in Google APIs"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "googleapis-common-protos-1.59.0.tar.gz", hash = "sha256:4168fcb568a826a52f23510412da405abd93f4d23ba544bb68d943b14ba3cb44"},
-    {file = "googleapis_common_protos-1.59.0-py2.py3-none-any.whl", hash = "sha256:b287dc48449d1d41af0c69f4ea26242b5ae4c3d7249a38b0984c86a4caffff1f"},
+    {file = "googleapis-common-protos-1.59.1.tar.gz", hash = "sha256:b35d530fe825fb4227857bc47ad84c33c809ac96f312e13182bdeaa2abe1178a"},
+    {file = "googleapis_common_protos-1.59.1-py2.py3-none-any.whl", hash = "sha256:0cbedb6fb68f1c07e18eb4c48256320777707e7d0c55063ae56c15db3224a61e"},
 ]
 
 [package.dependencies]
-protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev"
+protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0.dev0"
 
 [package.extras]
-grpc = ["grpcio (>=1.44.0,<2.0.0dev)"]
+grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
 
 [[package]]
 name = "greenlet"
 version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -1339,7 +1297,6 @@ test = ["objgraph", "psutil"]
 name = "h11"
 version = "0.14.0"
 description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1349,31 +1306,29 @@ files = [
 
 [[package]]
 name = "httpcore"
-version = "0.17.0"
+version = "0.17.3"
 description = "A minimal low-level HTTP client."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "httpcore-0.17.0-py3-none-any.whl", hash = "sha256:0fdfea45e94f0c9fd96eab9286077f9ff788dd186635ae61b312693e4d943599"},
-    {file = "httpcore-0.17.0.tar.gz", hash = "sha256:cc045a3241afbf60ce056202301b4d8b6af08845e3294055eb26b09913ef903c"},
+    {file = "httpcore-0.17.3-py3-none-any.whl", hash = "sha256:c2789b767ddddfa2a5782e3199b2b7f6894540b17b16ec26b2c4d8e103510b87"},
+    {file = "httpcore-0.17.3.tar.gz", hash = "sha256:a6f30213335e34c1ade7be6ec7c47f19f50c56db36abef1a9dfa3815b1cb3888"},
 ]
 
 [package.dependencies]
 anyio = ">=3.0,<5.0"
 certifi = "*"
 h11 = ">=0.13,<0.15"
-sniffio = ">=1.0.0,<2.0.0"
+sniffio = "==1.*"
 
 [package.extras]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (>=1.0.0,<2.0.0)"]
+socks = ["socksio (==1.*)"]
 
 [[package]]
 name = "httplib2"
 version = "0.22.0"
 description = "A comprehensive HTTP client library."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1386,14 +1341,13 @@ pyparsing = {version = ">=2.4.2,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.0.2 || >3.0
 
 [[package]]
 name = "httpx"
-version = "0.24.0"
+version = "0.24.1"
 description = "The next generation HTTP client."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "httpx-0.24.0-py3-none-any.whl", hash = "sha256:447556b50c1921c351ea54b4fe79d91b724ed2b027462ab9a329465d147d5a4e"},
-    {file = "httpx-0.24.0.tar.gz", hash = "sha256:507d676fc3e26110d41df7d35ebd8b3b8585052450f4097401c9be59d928c63e"},
+    {file = "httpx-0.24.1-py3-none-any.whl", hash = "sha256:06781eb9ac53cde990577af654bd990a4949de37a28bdb4a230d434f3a30b9bd"},
+    {file = "httpx-0.24.1.tar.gz", hash = "sha256:5853a43053df830c20f8110c5e69fe44d035d850b2dfe795e196f00fdb774bdd"},
 ]
 
 [package.dependencies]
@@ -1404,15 +1358,14 @@ sniffio = "*"
 
 [package.extras]
 brotli = ["brotli", "brotlicffi"]
-cli = ["click (>=8.0.0,<9.0.0)", "pygments (>=2.0.0,<3.0.0)", "rich (>=10,<14)"]
+cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (>=1.0.0,<2.0.0)"]
+socks = ["socksio (==1.*)"]
 
 [[package]]
 name = "idna"
 version = "2.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1422,14 +1375,13 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "6.6.0"
+version = "6.8.0"
 description = "Read metadata from Python packages"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-6.6.0-py3-none-any.whl", hash = "sha256:43dd286a2cd8995d5eaef7fee2066340423b818ed3fd70adf0bad5f1fac53fed"},
-    {file = "importlib_metadata-6.6.0.tar.gz", hash = "sha256:92501cdf9cc66ebd3e612f1b4f0c0765dfa42f0fa38ffb319b6bd84dd675d705"},
+    {file = "importlib_metadata-6.8.0-py3-none-any.whl", hash = "sha256:3ebb78df84a805d7698245025b975d9d67053cd94c79245ba4b3eb694abe68bb"},
+    {file = "importlib_metadata-6.8.0.tar.gz", hash = "sha256:dbace7892d8c0c4ac1ad096662232f831d4e64f4c4545bd53016a3e9d4654743"},
 ]
 
 [package.dependencies]
@@ -1438,13 +1390,12 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
 [[package]]
 name = "isodate"
 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1459,7 +1410,6 @@ six = "*"
 name = "itsdangerous"
 version = "2.1.2"
 description = "Safely pass data to untrusted environments and back."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1471,7 +1421,6 @@ files = [
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1489,7 +1438,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jmespath"
 version = "0.9.2"
 description = "JSON Matching Expressions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1501,7 +1449,6 @@ files = [
 name = "jsondiff"
 version = "1.1.1"
 description = "Diff JSON and JSON-like structures in Python"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1512,7 +1459,6 @@ files = [
 name = "jsonpickle"
 version = "3.0.1"
 description = "Python library for serializing any arbitrary object graph into JSON"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1529,7 +1475,6 @@ testing-libs = ["simplejson", "ujson"]
 name = "mako"
 version = "1.2.4"
 description = "A super-fast templating language that borrows the best ideas from the existing templating languages."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1547,87 +1492,85 @@ testing = ["pytest"]
 
 [[package]]
 name = "markdown"
-version = "3.4.3"
+version = "3.4.4"
 description = "Python implementation of John Gruber's Markdown."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
 importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 
 [package.extras]
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 testing = ["coverage", "pyyaml"]
 
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 [[package]]
 name = "mock"
 version = "2.0.0"
 description = "Rolling backport of unittest.mock for all Pythons"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1645,21 +1588,19 @@ test = ["unittest2 (>=1.1.0)"]
 
 [[package]]
 name = "more-itertools"
-version = "9.1.0"
+version = "10.0.0"
 description = "More routines for operating on iterables, beyond itertools"
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 name = "moto"
 version = "1.3.7"
 description = "A library that allows your python tests to easily mock out the boto library"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1694,7 +1635,6 @@ server = ["flask"]
 name = "oauth2client"
 version = "3.0.0"
 description = "OAuth 2.0 client library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1712,7 +1652,6 @@ six = ">=1.6.1"
 name = "paramiko"
 version = "2.12.0"
 description = "SSH2 protocol library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1736,7 +1675,6 @@ invoke = ["invoke (>=1.3)"]
 name = "pbr"
 version = "2.0.0"
 description = "Python Build Reasonableness"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1746,14 +1684,13 @@ files = [
 
 [[package]]
 name = "pluggy"
-version = "1.0.0"
+version = "1.2.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
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 ]
 
 [package.extras]
@@ -1764,7 +1701,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "prometheus-client"
 version = "0.9.0"
 description = "Python client for the Prometheus monitoring system."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1779,7 +1715,6 @@ twisted = ["twisted"]
 name = "protobuf"
 version = "3.20.3"
 description = "Protocol Buffers"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1811,7 +1746,6 @@ files = [
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 version = "2.9.6"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1834,7 +1768,6 @@ files = [
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 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1844,24 +1777,25 @@ files = [
 
 [[package]]
 name = "pyaml"
-version = "21.10.1"
-description = "PyYAML-based module to produce pretty and readable YAML-serialized data"
-category = "dev"
+version = "23.7.0"
+description = "PyYAML-based module to produce a bit more pretty and readable YAML-serialized data"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
 PyYAML = "*"
 
+[package.extras]
+anchors = ["unidecode"]
+
 [[package]]
 name = "pyasn1"
 version = "0.5.0"
 description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -1873,7 +1807,6 @@ files = [
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 version = "0.3.0"
 description = "A collection of ASN.1-based protocols modules"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -1888,7 +1821,6 @@ pyasn1 = ">=0.4.6,<0.6.0"
 name = "pycparser"
 version = "2.21"
 description = "C parser in Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1898,57 +1830,54 @@ files = [
 
 [[package]]
 name = "pycryptodome"
-version = "3.17"
+version = "3.18.0"
 description = "Cryptographic library for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
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 ]
 
 [[package]]
 name = "pyjwt"
-version = "2.6.0"
+version = "2.8.0"
 description = "JSON Web Token implementation in Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -1964,7 +1893,6 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 name = "pynacl"
 version = "1.5.0"
 description = "Python binding to the Networking and Cryptography (NaCl) library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1989,14 +1917,13 @@ tests = ["hypothesis (>=3.27.0)", "pytest (>=3.2.1,!=3.3.0)"]
 
 [[package]]
 name = "pyparsing"
-version = "3.0.9"
+version = "3.1.0"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
-category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
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 ]
 
 [package.extras]
@@ -2006,7 +1933,6 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pytest"
 version = "3.10.1"
 description = "pytest: simple powerful testing with Python"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2028,7 +1954,6 @@ six = ">=1.10.0"
 name = "pytest-cov"
 version = "2.9.0"
 description = "Pytest plugin for measuring coverage."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -2047,7 +1972,6 @@ testing = ["fields", "hunter", "process-tests (==2.0.2)", "pytest-xdist", "six",
 name = "pytest-flask"
 version = "0.15.1"
 description = "A set of py.test fixtures to test Flask applications."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2067,7 +1991,6 @@ docs = ["Sphinx", "sphinx-rtd-theme"]
 name = "python-dateutil"
 version = "2.8.2"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -2082,7 +2005,6 @@ six = ">=1.5"
 name = "python-jose"
 version = "2.0.2"
 description = "JOSE implementation in Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2104,7 +2026,6 @@ pycrypto = ["pycrypto (>=2.6.0,<2.7.0)"]
 name = "pytz"
 version = "2023.3"
 description = "World timezone definitions, modern and historical"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2116,7 +2037,6 @@ files = [
 name = "pywin32"
 version = "227"
 description = "Python for Window Extensions"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2138,7 +2058,6 @@ files = [
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 version = "5.4.1"
 description = "YAML parser and emitter for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -2175,14 +2094,13 @@ files = [
 
 [[package]]
 name = "requests"
-version = "2.30.0"
+version = "2.31.0"
 description = "Python HTTP for Humans."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -2199,7 +2117,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "responses"
 version = "0.23.1"
 description = "A utility library for mocking out the `requests` Python library."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2220,7 +2137,6 @@ tests = ["coverage (>=6.0.0)", "flake8", "mypy", "pytest (>=7.0.0)", "pytest-asy
 name = "retry"
 version = "0.9.2"
 description = "Easy to use retry decorator."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2236,7 +2152,6 @@ py = ">=1.4.26,<2.0.0"
 name = "rsa"
 version = "4.9"
 description = "Pure-Python RSA implementation"
-category = "main"
 optional = false
 python-versions = ">=3.6,<4"
 files = [
@@ -2251,7 +2166,6 @@ pyasn1 = ">=0.1.3"
 name = "s3transfer"
 version = "0.2.1"
 description = "An Amazon S3 Transfer Manager"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2264,26 +2178,24 @@ botocore = ">=1.12.36,<2.0.0"
 
 [[package]]
 name = "setuptools"
-version = "67.7.2"
+version = "68.0.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.extras]
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+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
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 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
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 version = "1.3.0"
 description = "Sniff out which async library your code is running under"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2305,57 +2216,53 @@ files = [
 
 [[package]]
 name = "sqlalchemy"
-version = "1.4.48"
+version = "1.4.49"
 description = "Database Abstraction Library"
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 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
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 [package.extras]
 aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
@@ -2382,7 +2289,6 @@ sqlcipher = ["sqlcipher3-binary"]
 name = "storageclient"
 version = "0.1.0"
 description = "Python client to interact with ceph/cleversafe backend"
-category = "main"
 optional = false
 python-versions = "*"
 files = []
@@ -2408,33 +2314,30 @@ resolved_reference = "4d39265d6e478acd5e1afe6e5dc722418f887d78"
 
 [[package]]
 name = "types-pyyaml"
-version = "6.0.12.9"
+version = "6.0.12.11"
 description = "Typing stubs for PyYAML"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [[package]]
 name = "typing-extensions"
-version = "4.5.0"
+version = "4.7.1"
 description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [[package]]
 name = "uritemplate"
 version = "3.0.1"
 description = "URI templates"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2446,7 +2349,6 @@ files = [
 name = "urllib3"
 version = "1.25.11"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
 files = [
@@ -2463,7 +2365,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 name = "userdatamodel"
 version = "2.4.3"
 description = ""
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2476,14 +2377,13 @@ sqlalchemy = ">=1.3.3"
 
 [[package]]
 name = "websocket-client"
-version = "1.5.1"
+version = "1.6.1"
 description = "WebSocket client for Python with low level API options"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.extras]
@@ -2493,14 +2393,13 @@ test = ["websockets"]
 
 [[package]]
 name = "werkzeug"
-version = "2.3.3"
+version = "2.3.6"
 description = "The comprehensive WSGI web application library."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "Werkzeug-2.3.6.tar.gz", hash = "sha256:98c774df2f91b05550078891dee5f0eb0cb797a522c757a2452b9cee5b202330"},
 ]
 
 [package.dependencies]
@@ -2513,7 +2412,6 @@ watchdog = ["watchdog (>=2.3)"]
 name = "wrapt"
 version = "1.15.0"
 description = "Module for decorators, wrappers and monkey patching."
-category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -2598,7 +2496,6 @@ files = [
 name = "wtforms"
 version = "3.0.1"
 description = "Form validation and rendering for Python web development."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2616,7 +2513,6 @@ email = ["email-validator"]
 name = "xmltodict"
 version = "0.13.0"
 description = "Makes working with XML feel like you are working with JSON"
-category = "main"
 optional = false
 python-versions = ">=3.4"
 files = [
@@ -2626,21 +2522,20 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.15.0"
+version = "3.16.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"},
-    {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
+    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
+    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<4.0.0"
-content-hash = "d86ef8b74c0707b148ad9818a7dcb882d611e535b4f06052355686fc0eb84e42"
+content-hash = "ef16856b4044f82b660e419d2ea9e1feb2cdcab4268b10004e26fc54943b857f"
diff --git a/pyproject.toml b/pyproject.toml
index d87eab482..c25eb9256 100755
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -22,7 +22,7 @@ cached_property = "^1.5.1"
 cdiserrors = "<2.0.0"
 cdislogging = "^1.0.0"
 cdispyutils = "^2.0.1"
-cryptography = ">=3.2"
+cryptography = ">=41.0.2"
 flask = ">=2.2.3"
 flask-cors = ">=3.0.3"
 flask-restful = ">=0.3.8"

From bb9d7abffc3cb97478ac4a5e486ebc76310dce86 Mon Sep 17 00:00:00 2001
From: Alex VanTol <avantol@uchicago.edu>
Date: Thu, 3 Aug 2023 17:32:38 -0500
Subject: [PATCH 07/26] fix(authlib): override authlib install with a forked
 version with a security patch

---
 poetry.lock    | 712 +++++++++++++++++++++++++------------------------
 pyproject.toml |  10 +-
 2 files changed, 376 insertions(+), 346 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index a1c4498b8..ea6c2e70d 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -14,14 +14,14 @@ files = [
 
 [[package]]
 name = "alembic"
-version = "1.10.4"
+version = "1.11.1"
 description = "A database migration tool for SQLAlchemy."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "alembic-1.10.4-py3-none-any.whl", hash = "sha256:43942c3d4bf2620c466b91c0f4fca136fe51ae972394a0cc8b90810d664e4f5c"},
-    {file = "alembic-1.10.4.tar.gz", hash = "sha256:295b54bbb92c4008ab6a7dcd1e227e668416d6f84b98b3c4446a2bc6214a556b"},
+    {file = "alembic-1.11.1-py3-none-any.whl", hash = "sha256:dc871798a601fab38332e38d6ddb38d5e734f60034baeb8e2db5b642fccd8ab8"},
+    {file = "alembic-1.11.1.tar.gz", hash = "sha256:6a810a6b012c88b33458fceb869aef09ac75d6ace5291915ba7fae44de372c01"},
 ]
 
 [package.dependencies]
@@ -49,24 +49,25 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
 
 [[package]]
 name = "anyio"
-version = "3.6.2"
+version = "3.7.1"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 category = "main"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7"
 files = [
-    {file = "anyio-3.6.2-py3-none-any.whl", hash = "sha256:fbbe32bd270d2a2ef3ed1c5d45041250284e31fc0a4df4a5a6071842051a51e3"},
-    {file = "anyio-3.6.2.tar.gz", hash = "sha256:25ea0d673ae30af41a0c442f81cf3b38c7e79fdc7b60335a4c14e05eb0947421"},
+    {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"},
+    {file = "anyio-3.7.1.tar.gz", hash = "sha256:44a3c9aba0f5defa43261a8b3efb97891f2bd7d804e0e1f56419befa1adfc780"},
 ]
 
 [package.dependencies]
+exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 idna = ">=2.8"
 sniffio = ">=1.1"
 
 [package.extras]
-doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"]
-trio = ["trio (>=0.16,<0.22)"]
+doc = ["Sphinx", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.2.2)", "sphinxcontrib-jquery"]
+test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
+trio = ["trio (<0.22)"]
 
 [[package]]
 name = "atomicwrites"
@@ -99,21 +100,25 @@ tests = ["attrs[tests-no-zope]", "zope-interface"]
 tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
 
 [[package]]
-name = "authlib"
+name = "Authlib"
 version = "0.11"
 description = "The ultimate Python library in building OAuth and OpenID Connect servers."
 category = "main"
 optional = false
 python-versions = "*"
-files = [
-    {file = "Authlib-0.11-py2.py3-none-any.whl", hash = "sha256:3a226f231e962a16dd5f6fcf0c113235805ba206e294717a64fa8e04ae3ad9c4"},
-    {file = "Authlib-0.11.tar.gz", hash = "sha256:9741db6de2950a0a5cefbdb72ec7ab12f7e9fd530ff47219f1530e79183cbaaf"},
-]
+files = []
+develop = false
 
 [package.dependencies]
 cryptography = "*"
 requests = "*"
 
+[package.source]
+type = "git"
+url = "https://github.com/uc-cdis/authlib"
+reference = "v0.11_fix/CVE-2022-39175_v1"
+resolved_reference = "e51048ad01fadd5b19578209f7ff23083360ebaa"
+
 [[package]]
 name = "authutils"
 version = "6.2.2"
@@ -157,14 +162,14 @@ wrapt = "*"
 
 [[package]]
 name = "azure-core"
-version = "1.26.4"
+version = "1.28.0"
 description = "Microsoft Azure Core Library for Python"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "azure-core-1.26.4.zip", hash = "sha256:075fe06b74c3007950dd93d49440c2f3430fd9b4a5a2756ec8c79454afc989c6"},
-    {file = "azure_core-1.26.4-py3-none-any.whl", hash = "sha256:d9664b4bc2675d72fba461a285ac43ae33abb2967014a955bf136d9703a2ab3c"},
+    {file = "azure-core-1.28.0.zip", hash = "sha256:e9eefc66fc1fde56dab6f04d4e5d12c60754d5a9fa49bdcfd8534fc96ed936bd"},
+    {file = "azure_core-1.28.0-py3-none-any.whl", hash = "sha256:dec36dfc8eb0b052a853f30c07437effec2f9e3e1fc8f703d9bdaa5cfc0043d9"},
 ]
 
 [package.dependencies]
@@ -177,24 +182,24 @@ aio = ["aiohttp (>=3.0)"]
 
 [[package]]
 name = "azure-storage-blob"
-version = "12.16.0"
+version = "12.17.0"
 description = "Microsoft Azure Blob Storage Client Library for Python"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "azure-storage-blob-12.16.0.zip", hash = "sha256:43b45f19a518a5c6895632f263b3825ebc23574f25cc84b66e1630a6160e466f"},
-    {file = "azure_storage_blob-12.16.0-py3-none-any.whl", hash = "sha256:91bb192b2a97939c4259c72373bac0f41e30810bbc853d5184f0f45904eacafd"},
+    {file = "azure-storage-blob-12.17.0.zip", hash = "sha256:c14b785a17050b30fc326a315bdae6bc4a078855f4f94a4c303ad74a48dc8c63"},
+    {file = "azure_storage_blob-12.17.0-py3-none-any.whl", hash = "sha256:0016e0c549a80282d7b4920c03f2f4ba35c53e6e3c7dbcd2a4a8c8eb3882c1e7"},
 ]
 
 [package.dependencies]
-azure-core = ">=1.26.0,<2.0.0"
+azure-core = ">=1.28.0,<2.0.0"
 cryptography = ">=2.1.4"
 isodate = ">=0.6.1"
-typing-extensions = ">=4.0.1"
+typing-extensions = ">=4.3.0"
 
 [package.extras]
-aio = ["azure-core[aio] (>=1.26.0,<2.0.0)"]
+aio = ["azure-core[aio] (>=1.28.0,<2.0.0)"]
 
 [[package]]
 name = "backoff"
@@ -397,14 +402,14 @@ resolved_reference = "bdfdeb05e45407e839fd954ce6d195d847cd8024"
 
 [[package]]
 name = "certifi"
-version = "2022.12.7"
+version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"},
-    {file = "certifi-2022.12.7.tar.gz", hash = "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3"},
+    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
+    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
 ]
 
 [[package]]
@@ -486,99 +491,99 @@ pycparser = "*"
 
 [[package]]
 name = "charset-normalizer"
-version = "3.1.0"
+version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
-    {file = "charset-normalizer-3.1.0.tar.gz", hash = "sha256:34e0a2f9c370eb95597aae63bf85eb5e96826d81e3dcf88b8886012906f509b5"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:e0ac8959c929593fee38da1c2b64ee9778733cdf03c482c9ff1d508b6b593b2b"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d7fc3fca01da18fbabe4625d64bb612b533533ed10045a2ac3dd194bfa656b60"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:04eefcee095f58eaabe6dc3cc2262f3bcd776d2c67005880894f447b3f2cb9c1"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:20064ead0717cf9a73a6d1e779b23d149b53daf971169289ed2ed43a71e8d3b0"},
-    {file = "charset_normalizer-3.1.0-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:1435ae15108b1cb6fffbcea2af3d468683b7afed0169ad718451f8db5d1aff6f"},
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 ]
 
 [[package]]
 name = "click"
-version = "8.1.3"
+version = "8.1.6"
 description = "Composable command line interface toolkit"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -702,31 +707,35 @@ yaml = ["PyYAML (>=3.10)"]
 
 [[package]]
 name = "cryptography"
-version = "40.0.2"
+version = "41.0.3"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
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+    {file = "cryptography-41.0.3.tar.gz", hash = "sha256:6d192741113ef5e30d89dcb5b956ef4e1578f304708701b8b73d38e3e1461f34"},
 ]
 
 [package.dependencies]
@@ -735,12 +744,12 @@ cffi = ">=1.12"
 [package.extras]
 docs = ["sphinx (>=5.3.0)", "sphinx-rtd-theme (>=1.1.1)"]
 docstest = ["pyenchant (>=1.6.11)", "sphinxcontrib-spelling (>=4.0.1)", "twine (>=1.12.0)"]
-pep8test = ["black", "check-manifest", "mypy", "ruff"]
-sdist = ["setuptools-rust (>=0.11.4)"]
+nox = ["nox"]
+pep8test = ["black", "check-sdist", "mypy", "ruff"]
+sdist = ["build"]
 ssh = ["bcrypt (>=3.1.5)"]
-test = ["iso8601", "pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-shard (>=0.1.2)", "pytest-subtests", "pytest-xdist"]
+test = ["pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-xdist"]
 test-randomorder = ["pytest-randomly"]
-tox = ["tox"]
 
 [[package]]
 name = "decorator"
@@ -756,20 +765,19 @@ files = [
 
 [[package]]
 name = "dnspython"
-version = "2.3.0"
+version = "2.4.1"
 description = "DNS toolkit"
 category = "main"
 optional = false
-python-versions = ">=3.7,<4.0"
+python-versions = ">=3.8,<4.0"
 files = [
-    {file = "dnspython-2.3.0-py3-none-any.whl", hash = "sha256:89141536394f909066cabd112e3e1a37e4e654db00a25308b0f130bc3152eb46"},
-    {file = "dnspython-2.3.0.tar.gz", hash = "sha256:224e32b03eb46be70e12ef6d64e0be123a64e621ab4c0822ff6d450d52a540b9"},
+    {file = "dnspython-2.4.1-py3-none-any.whl", hash = "sha256:5b7488477388b8c0b70a8ce93b227c5603bc7b77f1565afe8e729c36c51447d7"},
+    {file = "dnspython-2.4.1.tar.gz", hash = "sha256:c33971c79af5be968bb897e95c2448e11a645ee84d93b265ce0b7aabe5dfdca8"},
 ]
 
 [package.extras]
-curio = ["curio (>=1.2,<2.0)", "sniffio (>=1.1,<2.0)"]
-dnssec = ["cryptography (>=2.6,<40.0)"]
-doh = ["h2 (>=4.1.0)", "httpx (>=0.21.1)", "requests (>=2.23.0,<3.0.0)", "requests-toolbelt (>=0.9.1,<0.11.0)"]
+dnssec = ["cryptography (>=2.6,<42.0)"]
+doh = ["h2 (>=4.1.0)", "httpcore (>=0.17.3)", "httpx (>=0.24.1)"]
 doq = ["aioquic (>=0.9.20)"]
 idna = ["idna (>=2.1,<4.0)"]
 trio = ["trio (>=0.14,<0.23)"]
@@ -855,6 +863,21 @@ files = [
 dnspython = ">=1.15.0"
 idna = ">=2.0.0"
 
+[[package]]
+name = "exceptiongroup"
+version = "1.1.2"
+description = "Backport of PEP 654 (exception groups)"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "exceptiongroup-1.1.2-py3-none-any.whl", hash = "sha256:e346e69d186172ca7cf029c8c1d16235aa0e04035e5750b4b95039e65204328f"},
+    {file = "exceptiongroup-1.1.2.tar.gz", hash = "sha256:12c3e887d6485d16943a309616de20ae5582633e0a2eda17f4e10fd61c1e8af5"},
+]
+
+[package.extras]
+test = ["pytest (>=6)"]
+
 [[package]]
 name = "flask"
 version = "2.3.2"
@@ -881,30 +904,29 @@ dotenv = ["python-dotenv"]
 
 [[package]]
 name = "flask-cors"
-version = "3.0.10"
+version = "4.0.0"
 description = "A Flask extension adding a decorator for CORS support"
 category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "Flask-Cors-3.0.10.tar.gz", hash = "sha256:b60839393f3b84a0f3746f6cdca56c1ad7426aa738b70d6c61375857823181de"},
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+    {file = "Flask-Cors-4.0.0.tar.gz", hash = "sha256:f268522fcb2f73e2ecdde1ef45e2fd5c71cc48fe03cffb4b441c6d1b40684eb0"},
+    {file = "Flask_Cors-4.0.0-py2.py3-none-any.whl", hash = "sha256:bc3492bfd6368d27cfe79c7821df5a8a319e1a6d5eab277a3794be19bdc51783"},
 ]
 
 [package.dependencies]
 Flask = ">=0.9"
-Six = "*"
 
 [[package]]
 name = "flask-restful"
-version = "0.3.9"
+version = "0.3.10"
 description = "Simple framework for creating REST APIs"
 category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "Flask-RESTful-0.3.9.tar.gz", hash = "sha256:ccec650b835d48192138c85329ae03735e6ced58e9b2d9c2146d6c84c06fa53e"},
-    {file = "Flask_RESTful-0.3.9-py2.py3-none-any.whl", hash = "sha256:4970c49b6488e46c520b325f54833374dc2b98e211f1b272bd4b0c516232afe2"},
+    {file = "Flask-RESTful-0.3.10.tar.gz", hash = "sha256:fe4af2ef0027df8f9b4f797aba20c5566801b6ade995ac63b588abf1a59cec37"},
+    {file = "Flask_RESTful-0.3.10-py2.py3-none-any.whl", hash = "sha256:1cf93c535172f112e080b0d4503a8d15f93a48c88bdd36dd87269bdaf405051b"},
 ]
 
 [package.dependencies]
@@ -1105,14 +1127,14 @@ six = "*"
 
 [[package]]
 name = "google-cloud-core"
-version = "2.3.2"
+version = "2.3.3"
 description = "Google Cloud API client core library"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "google-cloud-core-2.3.2.tar.gz", hash = "sha256:b9529ee7047fd8d4bf4a2182de619154240df17fbe60ead399078c1ae152af9a"},
-    {file = "google_cloud_core-2.3.2-py2.py3-none-any.whl", hash = "sha256:8417acf6466be2fa85123441696c4badda48db314c607cf1e5d543fa8bdc22fe"},
+    {file = "google-cloud-core-2.3.3.tar.gz", hash = "sha256:37b80273c8d7eee1ae816b3a20ae43585ea50506cb0e60f3cf5be5f87f1373cb"},
+    {file = "google_cloud_core-2.3.3-py2.py3-none-any.whl", hash = "sha256:fbd11cad3e98a7e5b0343dc07cb1039a5ffd7a5bb96e1f1e27cee4bda4a90863"},
 ]
 
 [package.dependencies]
@@ -1245,21 +1267,21 @@ requests = ["requests (>=2.18.0,<3.0.0dev)"]
 
 [[package]]
 name = "googleapis-common-protos"
-version = "1.59.0"
+version = "1.60.0"
 description = "Common protobufs used in Google APIs"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "googleapis-common-protos-1.59.0.tar.gz", hash = "sha256:4168fcb568a826a52f23510412da405abd93f4d23ba544bb68d943b14ba3cb44"},
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+    {file = "googleapis-common-protos-1.60.0.tar.gz", hash = "sha256:e73ebb404098db405ba95d1e1ae0aa91c3e15a71da031a2eeb6b2e23e7bc3708"},
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 ]
 
 [package.dependencies]
-protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev"
+protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0.dev0"
 
 [package.extras]
-grpc = ["grpcio (>=1.44.0,<2.0.0dev)"]
+grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
 
 [[package]]
 name = "greenlet"
@@ -1349,14 +1371,14 @@ files = [
 
 [[package]]
 name = "httpcore"
-version = "0.17.0"
+version = "0.17.3"
 description = "A minimal low-level HTTP client."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "httpcore-0.17.0.tar.gz", hash = "sha256:cc045a3241afbf60ce056202301b4d8b6af08845e3294055eb26b09913ef903c"},
+    {file = "httpcore-0.17.3-py3-none-any.whl", hash = "sha256:c2789b767ddddfa2a5782e3199b2b7f6894540b17b16ec26b2c4d8e103510b87"},
+    {file = "httpcore-0.17.3.tar.gz", hash = "sha256:a6f30213335e34c1ade7be6ec7c47f19f50c56db36abef1a9dfa3815b1cb3888"},
 ]
 
 [package.dependencies]
@@ -1386,14 +1408,14 @@ pyparsing = {version = ">=2.4.2,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.0.2 || >3.0
 
 [[package]]
 name = "httpx"
-version = "0.24.0"
+version = "0.24.1"
 description = "The next generation HTTP client."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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+    {file = "httpx-0.24.1.tar.gz", hash = "sha256:5853a43053df830c20f8110c5e69fe44d035d850b2dfe795e196f00fdb774bdd"},
 ]
 
 [package.dependencies]
@@ -1422,14 +1444,14 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "6.6.0"
+version = "6.8.0"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1438,7 +1460,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
 [[package]]
 name = "isodate"
@@ -1547,80 +1569,81 @@ testing = ["pytest"]
 
 [[package]]
 name = "markdown"
-version = "3.4.3"
+version = "3.4.4"
 description = "Python implementation of John Gruber's Markdown."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
 importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 
 [package.extras]
+docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.0)", "mkdocs-nature (>=0.4)"]
 testing = ["coverage", "pyyaml"]
 
 [[package]]
 name = "markupsafe"
-version = "2.1.2"
+version = "2.1.3"
 description = "Safely add untrusted strings to HTML/XML markup."
 category = "main"
 optional = false
 python-versions = ">=3.7"
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 [[package]]
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 [[package]]
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-version = "9.1.0"
+version = "10.1.0"
 description = "More routines for operating on iterables, beyond itertools"
 category = "dev"
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 [package.dependencies]
 PyYAML = "*"
 
+[package.extras]
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 [[package]]
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 version = "0.5.0"
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-version = "2.6.0"
+version = "2.8.0"
 description = "JSON Web Token implementation in Python"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
@@ -1989,14 +2014,14 @@ tests = ["hypothesis (>=3.27.0)", "pytest (>=3.2.1,!=3.3.0)"]
 
 [[package]]
 name = "pyparsing"
-version = "3.0.9"
+version = "3.1.1"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 category = "main"
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 python-versions = ">=3.6.8"
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 ]
 
 [package.extras]
@@ -2175,14 +2200,14 @@ files = [
 
 [[package]]
 name = "requests"
-version = "2.30.0"
+version = "2.31.0"
 description = "Python HTTP for Humans."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
@@ -2197,21 +2222,21 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "responses"
-version = "0.23.1"
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 description = "A utility library for mocking out the `requests` Python library."
 category = "dev"
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 python-versions = ">=3.7"
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 [package.dependencies]
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-requests = ">=2.22.0,<3.0"
+requests = ">=2.30.0,<3.0"
 types-PyYAML = "*"
-urllib3 = ">=1.25.10"
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 [package.extras]
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@@ -2264,19 +2289,19 @@ botocore = ">=1.12.36,<2.0.0"
 
 [[package]]
 name = "setuptools"
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+version = "68.0.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
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 [[package]]
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 [package.dependencies]
@@ -2381,7 +2403,7 @@ sqlcipher = ["sqlcipher3-binary"]
 [[package]]
 name = "storageclient"
 version = "0.1.0"
-description = "Python client to interact with ceph/cleversafe backend"
+description = ""
 category = "main"
 optional = false
 python-versions = "*"
@@ -2408,26 +2430,26 @@ resolved_reference = "4d39265d6e478acd5e1afe6e5dc722418f887d78"
 
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 python-versions = "*"
 files = [
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 category = "main"
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 python-versions = ">=3.7"
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 [[package]]
@@ -2476,14 +2498,14 @@ sqlalchemy = ">=1.3.3"
 
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 description = "WebSocket client for Python with low level API options"
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 python-versions = ">=3.7"
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 ]
 
 [package.extras]
@@ -2493,14 +2515,14 @@ test = ["websockets"]
 
 [[package]]
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+version = "2.3.6"
 description = "The comprehensive WSGI web application library."
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 python-versions = ">=3.8"
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@@ -2626,21 +2648,21 @@ files = [
 
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-content-hash = "d86ef8b74c0707b148ad9818a7dcb882d611e535b4f06052355686fc0eb84e42"
+content-hash = "9296f6be9ec84c8d798b4b195352f9f05a03a7dded93cf8a80e65f83095ae238"
diff --git a/pyproject.toml b/pyproject.toml
index 02d665c50..790c99106 100755
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -13,7 +13,15 @@ include = [
 [tool.poetry.dependencies]
 python = ">=3.9,<4.0.0"
 alembic = "^1.7.7"
-authlib = "*" # let authutils decide which version we're using
+
+# Temporarily override authlib with a modified, forked version
+# where we've made a security patch that got applied in a much later
+# version.
+#
+# This is temporary while we work on the upgrade to the latest version
+authlib = {git = "https://github.com/uc-cdis/authlib", rev = "v0.11_fix/CVE-2022-39175_v1"}
+# authlib = "*" # let authutils decide which version we're using
+
 authutils = "^6.2.2"
 bcrypt = "^3.1.4"
 boto3 = "~1.9.91"

From 45b35b2b481449f9b5ddd4a99c03f6b31a678629 Mon Sep 17 00:00:00 2001
From: Alex VanTol <avantol@uchicago.edu>
Date: Thu, 3 Aug 2023 17:36:03 -0500
Subject: [PATCH 08/26] chore(poetry): update lock

---
 poetry.lock | 205 +++++++++++++++++++++++++++++++++++++++++-----------
 1 file changed, 164 insertions(+), 41 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 09ed19a59..6e1ede494 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,9 +1,10 @@
-# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand.
 
 [[package]]
 name = "addict"
 version = "2.4.0"
 description = "Addict is a dictionary whose items can be set using both attribute and item syntax."
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -15,6 +16,7 @@ files = [
 name = "alembic"
 version = "1.11.1"
 description = "A database migration tool for SQLAlchemy."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -34,6 +36,7 @@ tz = ["python-dateutil"]
 name = "aniso8601"
 version = "9.0.1"
 description = "A library for parsing ISO 8601 strings."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -48,6 +51,7 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
 name = "anyio"
 version = "3.7.1"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -69,6 +73,7 @@ trio = ["trio (<0.22)"]
 name = "atomicwrites"
 version = "1.4.1"
 description = "Atomic file writes."
+category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -79,6 +84,7 @@ files = [
 name = "attrs"
 version = "23.1.0"
 description = "Classes Without Boilerplate"
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -97,6 +103,7 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 name = "Authlib"
 version = "0.11"
 description = "The ultimate Python library in building OAuth and OpenID Connect servers."
+category = "main"
 optional = false
 python-versions = "*"
 files = []
@@ -116,6 +123,7 @@ resolved_reference = "e51048ad01fadd5b19578209f7ff23083360ebaa"
 name = "authutils"
 version = "6.2.2"
 description = "Gen3 auth utility functions"
+category = "main"
 optional = false
 python-versions = ">=3.9,<4.0"
 files = [
@@ -139,6 +147,7 @@ flask = ["Flask (>=0.10.1)"]
 name = "aws-xray-sdk"
 version = "0.95"
 description = "The AWS X-Ray SDK for Python (the SDK) enables Python developers to record and emit information from within their applications to the AWS X-Ray service."
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -155,6 +164,7 @@ wrapt = "*"
 name = "azure-core"
 version = "1.28.0"
 description = "Microsoft Azure Core Library for Python"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -174,6 +184,7 @@ aio = ["aiohttp (>=3.0)"]
 name = "azure-storage-blob"
 version = "12.17.0"
 description = "Microsoft Azure Blob Storage Client Library for Python"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -194,6 +205,7 @@ aio = ["azure-core[aio] (>=1.28.0,<2.0.0)"]
 name = "backoff"
 version = "1.11.1"
 description = "Function decoration for backoff and retry"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -205,6 +217,7 @@ files = [
 name = "bcrypt"
 version = "3.2.2"
 description = "Modern password hashing for your software and your servers"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -232,6 +245,7 @@ typecheck = ["mypy"]
 name = "blinker"
 version = "1.6.2"
 description = "Fast, simple object-to-object and broadcast signaling"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -243,6 +257,7 @@ files = [
 name = "boto"
 version = "2.49.0"
 description = "Amazon Web Services Library"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -254,6 +269,7 @@ files = [
 name = "boto3"
 version = "1.9.253"
 description = "The AWS SDK for Python"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -270,6 +286,7 @@ s3transfer = ">=0.2.0,<0.3.0"
 name = "botocore"
 version = "1.12.253"
 description = "Low-level, data-driven core of boto 3."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -287,6 +304,7 @@ urllib3 = {version = ">=1.20,<1.26", markers = "python_version >= \"3.4\""}
 name = "cached-property"
 version = "1.5.2"
 description = "A decorator for caching properties in classes."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -298,6 +316,7 @@ files = [
 name = "cachelib"
 version = "0.2.0"
 description = "A collection of cache libraries in the same API interface."
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -309,6 +328,7 @@ files = [
 name = "cachetools"
 version = "4.2.4"
 description = "Extensible memoizing collections and decorators"
+category = "main"
 optional = false
 python-versions = "~=3.5"
 files = [
@@ -320,6 +340,7 @@ files = [
 name = "cdiserrors"
 version = "1.0.0"
 description = "Gen3 shared exceptions and utilities."
+category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -337,6 +358,7 @@ flask = ["Flask (>=1.1.2,<2.0.0)"]
 name = "cdislogging"
 version = "1.0.0"
 description = "Standardized logging tool and format for cdis applications"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -347,6 +369,7 @@ files = [
 name = "cdispyutils"
 version = "2.0.1"
 description = "This package includes several utility Python tools for the Gen3 stack."
+category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -365,6 +388,7 @@ requests = "*"
 name = "cdisutilstest"
 version = "0.2.4"
 description = "Collection of test data and tools"
+category = "dev"
 optional = false
 python-versions = "*"
 files = []
@@ -380,6 +404,7 @@ resolved_reference = "bdfdeb05e45407e839fd954ce6d195d847cd8024"
 name = "certifi"
 version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -391,6 +416,7 @@ files = [
 name = "cffi"
 version = "1.15.1"
 description = "Foreign Function Interface for Python calling C code."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -467,6 +493,7 @@ pycparser = "*"
 name = "charset-normalizer"
 version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -551,6 +578,7 @@ files = [
 name = "click"
 version = "8.1.6"
 description = "Composable command line interface toolkit"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -565,6 +593,7 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "codacy-coverage"
 version = "1.3.11"
 description = "Codacy coverage reporter for Python"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -583,6 +612,7 @@ test = ["coverage", "nosetests"]
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -594,6 +624,7 @@ files = [
 name = "coverage"
 version = "5.5"
 description = "Code coverage measurement for Python"
+category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
 files = [
@@ -658,6 +689,7 @@ toml = ["toml"]
 name = "coveralls"
 version = "2.2.0"
 description = "Show coverage stats online via coveralls.io"
+category = "dev"
 optional = false
 python-versions = ">= 3.5"
 files = [
@@ -675,34 +707,35 @@ yaml = ["PyYAML (>=3.10)"]
 
 [[package]]
 name = "cryptography"
-version = "41.0.2"
+version = "41.0.3"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "cryptography-41.0.2-cp37-abi3-macosx_10_12_x86_64.whl", hash = "sha256:079347de771f9282fbfe0e0236c716686950c19dee1b76240ab09ce1624d76d7"},
-    {file = "cryptography-41.0.2-cp37-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:439c3cc4c0d42fa999b83ded80a9a1fb54d53c58d6e59234cfe97f241e6c781d"},
-    {file = "cryptography-41.0.2-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f14ad275364c8b4e525d018f6716537ae7b6d369c094805cae45300847e0894f"},
-    {file = "cryptography-41.0.2-cp37-abi3-manylinux_2_28_aarch64.whl", hash = "sha256:84609ade00a6ec59a89729e87a503c6e36af98ddcd566d5f3be52e29ba993182"},
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+    {file = "cryptography-41.0.3-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:a74fbcdb2a0d46fe00504f571a2a540532f4c188e6ccf26f1f178480117b33c4"},
+    {file = "cryptography-41.0.3.tar.gz", hash = "sha256:6d192741113ef5e30d89dcb5b956ef4e1578f304708701b8b73d38e3e1461f34"},
 ]
 
 [package.dependencies]
@@ -722,6 +755,7 @@ test-randomorder = ["pytest-randomly"]
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -733,6 +767,7 @@ files = [
 name = "dnspython"
 version = "2.4.1"
 description = "DNS toolkit"
+category = "main"
 optional = false
 python-versions = ">=3.8,<4.0"
 files = [
@@ -752,6 +787,7 @@ wmi = ["wmi (>=1.5.1,<2.0.0)"]
 name = "docker"
 version = "5.0.3"
 description = "A Python library for the Docker Engine API."
+category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -772,6 +808,7 @@ tls = ["cryptography (>=3.4.7)", "idna (>=2.0.0)", "pyOpenSSL (>=17.5.0)"]
 name = "docopt"
 version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -782,6 +819,7 @@ files = [
 name = "docutils"
 version = "0.15.2"
 description = "Docutils -- Python Documentation Utilities"
+category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -794,6 +832,7 @@ files = [
 name = "ecdsa"
 version = "0.18.0"
 description = "ECDSA cryptographic signature library (pure python)"
+category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -812,6 +851,7 @@ gmpy2 = ["gmpy2"]
 name = "email-validator"
 version = "1.3.1"
 description = "A robust email address syntax and deliverability validation library."
+category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -827,6 +867,7 @@ idna = ">=2.0.0"
 name = "exceptiongroup"
 version = "1.1.2"
 description = "Backport of PEP 654 (exception groups)"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -841,6 +882,7 @@ test = ["pytest (>=6)"]
 name = "flask"
 version = "2.3.2"
 description = "A simple framework for building complex web applications."
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -864,6 +906,7 @@ dotenv = ["python-dotenv"]
 name = "flask-cors"
 version = "4.0.0"
 description = "A Flask extension adding a decorator for CORS support"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -878,6 +921,7 @@ Flask = ">=0.9"
 name = "flask-restful"
 version = "0.3.10"
 description = "Simple framework for creating REST APIs"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -898,6 +942,7 @@ docs = ["sphinx"]
 name = "flask-wtf"
 version = "1.1.1"
 description = "Form rendering, validation, and CSRF protection for Flask with WTForms."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -917,6 +962,7 @@ email = ["email-validator"]
 name = "future"
 version = "0.18.3"
 description = "Clean single-source support for Python 3 and 2"
+category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -927,6 +973,7 @@ files = [
 name = "gen3authz"
 version = "1.5.1"
 description = "Gen3 authz client"
+category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -944,6 +991,7 @@ six = ">=1.16.0,<2.0.0"
 name = "gen3cirrus"
 version = "2.0.0"
 description = ""
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -963,6 +1011,7 @@ oauth2client = ">=2.0.0,<4.0dev"
 name = "gen3config"
 version = "1.1.0"
 description = "Gen3 Configuration Library"
+category = "main"
 optional = false
 python-versions = "^3.9"
 files = [
@@ -980,6 +1029,7 @@ six = "*"
 name = "gen3users"
 version = "0.6.0"
 description = "Utils for Gen3 commons user management"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -995,6 +1045,7 @@ PyYAML = ">=5.1,<6.0"
 name = "google-api-core"
 version = "1.34.0"
 description = "Google API client core library"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1017,6 +1068,7 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0dev)"]
 name = "google-api-python-client"
 version = "1.11.0"
 description = "Google API Client Library for Python"
+category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -1036,6 +1088,7 @@ uritemplate = ">=3.0.0,<4dev"
 name = "google-auth"
 version = "1.35.0"
 description = "Google Authentication Library"
+category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 files = [
@@ -1059,6 +1112,7 @@ reauth = ["pyu2f (>=0.1.5)"]
 name = "google-auth-httplib2"
 version = "0.1.0"
 description = "Google Authentication Library: httplib2 transport"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1075,6 +1129,7 @@ six = "*"
 name = "google-cloud-core"
 version = "2.3.3"
 description = "Google Cloud API client core library"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1083,7 +1138,7 @@ files = [
 ]
 
 [package.dependencies]
-google-api-core = ">=1.31.6,<2.0.dev0 || >2.3.0,<3.0.0dev"
+google-api-core = ">=1.31.6,<2.0.0 || >2.3.0,<3.0.0dev"
 google-auth = ">=1.25.0,<3.0dev"
 
 [package.extras]
@@ -1093,6 +1148,7 @@ grpc = ["grpcio (>=1.38.0,<2.0dev)"]
 name = "google-cloud-storage"
 version = "1.44.0"
 description = "Google Cloud Storage API client library"
+category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 files = [
@@ -1113,6 +1169,7 @@ six = "*"
 name = "google-crc32c"
 version = "1.5.0"
 description = "A python wrapper of the C library 'Google CRC32C'"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1193,6 +1250,7 @@ testing = ["pytest"]
 name = "google-resumable-media"
 version = "2.5.0"
 description = "Utilities for Google Media Downloads and Resumable Uploads"
+category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
@@ -1209,13 +1267,14 @@ requests = ["requests (>=2.18.0,<3.0.0dev)"]
 
 [[package]]
 name = "googleapis-common-protos"
-version = "1.59.1"
+version = "1.60.0"
 description = "Common protobufs used in Google APIs"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "googleapis-common-protos-1.59.1.tar.gz", hash = "sha256:b35d530fe825fb4227857bc47ad84c33c809ac96f312e13182bdeaa2abe1178a"},
-    {file = "googleapis_common_protos-1.59.1-py2.py3-none-any.whl", hash = "sha256:0cbedb6fb68f1c07e18eb4c48256320777707e7d0c55063ae56c15db3224a61e"},
+    {file = "googleapis-common-protos-1.60.0.tar.gz", hash = "sha256:e73ebb404098db405ba95d1e1ae0aa91c3e15a71da031a2eeb6b2e23e7bc3708"},
+    {file = "googleapis_common_protos-1.60.0-py2.py3-none-any.whl", hash = "sha256:69f9bbcc6acde92cab2db95ce30a70bd2b81d20b12eff3f1aabaffcbe8a93918"},
 ]
 
 [package.dependencies]
@@ -1228,6 +1287,7 @@ grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
 name = "greenlet"
 version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
+category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -1301,6 +1361,7 @@ test = ["objgraph", "psutil"]
 name = "h11"
 version = "0.14.0"
 description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1312,6 +1373,7 @@ files = [
 name = "httpcore"
 version = "0.17.3"
 description = "A minimal low-level HTTP client."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1323,16 +1385,17 @@ files = [
 anyio = ">=3.0,<5.0"
 certifi = "*"
 h11 = ">=0.13,<0.15"
-sniffio = "==1.*"
+sniffio = ">=1.0.0,<2.0.0"
 
 [package.extras]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (==1.*)"]
+socks = ["socksio (>=1.0.0,<2.0.0)"]
 
 [[package]]
 name = "httplib2"
 version = "0.22.0"
 description = "A comprehensive HTTP client library."
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1347,6 +1410,7 @@ pyparsing = {version = ">=2.4.2,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.0.2 || >3.0
 name = "httpx"
 version = "0.24.1"
 description = "The next generation HTTP client."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1362,14 +1426,15 @@ sniffio = "*"
 
 [package.extras]
 brotli = ["brotli", "brotlicffi"]
-cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
+cli = ["click (>=8.0.0,<9.0.0)", "pygments (>=2.0.0,<3.0.0)", "rich (>=10,<14)"]
 http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (==1.*)"]
+socks = ["socksio (>=1.0.0,<2.0.0)"]
 
 [[package]]
 name = "idna"
 version = "2.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1381,6 +1446,7 @@ files = [
 name = "importlib-metadata"
 version = "6.8.0"
 description = "Read metadata from Python packages"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1400,6 +1466,7 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs
 name = "isodate"
 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1414,6 +1481,7 @@ six = "*"
 name = "itsdangerous"
 version = "2.1.2"
 description = "Safely pass data to untrusted environments and back."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1425,6 +1493,7 @@ files = [
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1442,6 +1511,7 @@ i18n = ["Babel (>=2.7)"]
 name = "jmespath"
 version = "0.9.2"
 description = "JSON Matching Expressions"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1453,6 +1523,7 @@ files = [
 name = "jsondiff"
 version = "1.1.1"
 description = "Diff JSON and JSON-like structures in Python"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1463,6 +1534,7 @@ files = [
 name = "jsonpickle"
 version = "3.0.1"
 description = "Python library for serializing any arbitrary object graph into JSON"
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1479,6 +1551,7 @@ testing-libs = ["simplejson", "ujson"]
 name = "mako"
 version = "1.2.4"
 description = "A super-fast templating language that borrows the best ideas from the existing templating languages."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1498,6 +1571,7 @@ testing = ["pytest"]
 name = "markdown"
 version = "3.4.4"
 description = "Python implementation of John Gruber's Markdown."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1516,6 +1590,7 @@ testing = ["coverage", "pyyaml"]
 name = "markupsafe"
 version = "2.1.3"
 description = "Safely add untrusted strings to HTML/XML markup."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1575,6 +1650,7 @@ files = [
 name = "mock"
 version = "2.0.0"
 description = "Rolling backport of unittest.mock for all Pythons"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1592,19 +1668,21 @@ test = ["unittest2 (>=1.1.0)"]
 
 [[package]]
 name = "more-itertools"
-version = "10.0.0"
+version = "10.1.0"
 description = "More routines for operating on iterables, beyond itertools"
+category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "more-itertools-10.0.0.tar.gz", hash = "sha256:cd65437d7c4b615ab81c0640c0480bc29a550ea032891977681efd28344d51e1"},
-    {file = "more_itertools-10.0.0-py3-none-any.whl", hash = "sha256:928d514ffd22b5b0a8fce326d57f423a55d2ff783b093bab217eda71e732330f"},
+    {file = "more-itertools-10.1.0.tar.gz", hash = "sha256:626c369fa0eb37bac0291bce8259b332fd59ac792fa5497b59837309cd5b114a"},
+    {file = "more_itertools-10.1.0-py3-none-any.whl", hash = "sha256:64e0735fcfdc6f3464ea133afe8ea4483b1c5fe3a3d69852e6503b43a0b222e6"},
 ]
 
 [[package]]
 name = "moto"
 version = "1.3.7"
 description = "A library that allows your python tests to easily mock out the boto library"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1639,6 +1717,7 @@ server = ["flask"]
 name = "oauth2client"
 version = "3.0.0"
 description = "OAuth 2.0 client library"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1656,6 +1735,7 @@ six = ">=1.6.1"
 name = "paramiko"
 version = "2.12.0"
 description = "SSH2 protocol library"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1679,6 +1759,7 @@ invoke = ["invoke (>=1.3)"]
 name = "pbr"
 version = "2.0.0"
 description = "Python Build Reasonableness"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1690,6 +1771,7 @@ files = [
 name = "pluggy"
 version = "1.2.0"
 description = "plugin and hook calling mechanisms for python"
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1705,6 +1787,7 @@ testing = ["pytest", "pytest-benchmark"]
 name = "prometheus-client"
 version = "0.9.0"
 description = "Python client for the Prometheus monitoring system."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1719,6 +1802,7 @@ twisted = ["twisted"]
 name = "protobuf"
 version = "3.20.3"
 description = "Protocol Buffers"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1750,6 +1834,7 @@ files = [
 name = "psycopg2"
 version = "2.9.6"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1772,6 +1857,7 @@ files = [
 name = "py"
 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1783,6 +1869,7 @@ files = [
 name = "pyaml"
 version = "23.7.0"
 description = "PyYAML-based module to produce a bit more pretty and readable YAML-serialized data"
+category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1800,6 +1887,7 @@ anchors = ["unidecode"]
 name = "pyasn1"
 version = "0.5.0"
 description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)"
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -1811,6 +1899,7 @@ files = [
 name = "pyasn1-modules"
 version = "0.3.0"
 description = "A collection of ASN.1-based protocols modules"
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -1825,6 +1914,7 @@ pyasn1 = ">=0.4.6,<0.6.0"
 name = "pycparser"
 version = "2.21"
 description = "C parser in Python"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1836,6 +1926,7 @@ files = [
 name = "pycryptodome"
 version = "3.18.0"
 description = "Cryptographic library for Python"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1877,6 +1968,7 @@ files = [
 name = "pyjwt"
 version = "2.8.0"
 description = "JSON Web Token implementation in Python"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1897,6 +1989,7 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 name = "pynacl"
 version = "1.5.0"
 description = "Python binding to the Networking and Cryptography (NaCl) library"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1921,13 +2014,14 @@ tests = ["hypothesis (>=3.27.0)", "pytest (>=3.2.1,!=3.3.0)"]
 
 [[package]]
 name = "pyparsing"
-version = "3.1.0"
+version = "3.1.1"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
+category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
-    {file = "pyparsing-3.1.0-py3-none-any.whl", hash = "sha256:d554a96d1a7d3ddaf7183104485bc19fd80543ad6ac5bdb6426719d766fb06c1"},
-    {file = "pyparsing-3.1.0.tar.gz", hash = "sha256:edb662d6fe322d6e990b1594b5feaeadf806803359e3d4d42f11e295e588f0ea"},
+    {file = "pyparsing-3.1.1-py3-none-any.whl", hash = "sha256:32c7c0b711493c72ff18a981d24f28aaf9c1fb7ed5e9667c9e84e3db623bdbfb"},
+    {file = "pyparsing-3.1.1.tar.gz", hash = "sha256:ede28a1a32462f5a9705e07aea48001a08f7cf81a021585011deba701581a0db"},
 ]
 
 [package.extras]
@@ -1937,6 +2031,7 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pytest"
 version = "3.10.1"
 description = "pytest: simple powerful testing with Python"
+category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1958,6 +2053,7 @@ six = ">=1.10.0"
 name = "pytest-cov"
 version = "2.9.0"
 description = "Pytest plugin for measuring coverage."
+category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1976,6 +2072,7 @@ testing = ["fields", "hunter", "process-tests (==2.0.2)", "pytest-xdist", "six",
 name = "pytest-flask"
 version = "0.15.1"
 description = "A set of py.test fixtures to test Flask applications."
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1995,6 +2092,7 @@ docs = ["Sphinx", "sphinx-rtd-theme"]
 name = "python-dateutil"
 version = "2.8.2"
 description = "Extensions to the standard Python datetime module"
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -2009,6 +2107,7 @@ six = ">=1.5"
 name = "python-jose"
 version = "2.0.2"
 description = "JOSE implementation in Python"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2030,6 +2129,7 @@ pycrypto = ["pycrypto (>=2.6.0,<2.7.0)"]
 name = "pytz"
 version = "2023.3"
 description = "World timezone definitions, modern and historical"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2041,6 +2141,7 @@ files = [
 name = "pywin32"
 version = "227"
 description = "Python for Window Extensions"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2062,6 +2163,7 @@ files = [
 name = "pyyaml"
 version = "5.4.1"
 description = "YAML parser and emitter for Python"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -2100,6 +2202,7 @@ files = [
 name = "requests"
 version = "2.31.0"
 description = "Python HTTP for Humans."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2121,6 +2224,7 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "responses"
 version = "0.23.3"
 description = "A utility library for mocking out the `requests` Python library."
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2141,6 +2245,7 @@ tests = ["coverage (>=6.0.0)", "flake8", "mypy", "pytest (>=7.0.0)", "pytest-asy
 name = "retry"
 version = "0.9.2"
 description = "Easy to use retry decorator."
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2156,6 +2261,7 @@ py = ">=1.4.26,<2.0.0"
 name = "rsa"
 version = "4.9"
 description = "Pure-Python RSA implementation"
+category = "main"
 optional = false
 python-versions = ">=3.6,<4"
 files = [
@@ -2170,6 +2276,7 @@ pyasn1 = ">=0.1.3"
 name = "s3transfer"
 version = "0.2.1"
 description = "An Amazon S3 Transfer Manager"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2184,6 +2291,7 @@ botocore = ">=1.12.36,<2.0.0"
 name = "setuptools"
 version = "68.0.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2200,6 +2308,7 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -2211,6 +2320,7 @@ files = [
 name = "sniffio"
 version = "1.3.0"
 description = "Sniff out which async library your code is running under"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2222,6 +2332,7 @@ files = [
 name = "sqlalchemy"
 version = "1.4.49"
 description = "Database Abstraction Library"
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -2266,7 +2377,7 @@ files = [
 ]
 
 [package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\")"}
+greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and platform_machine == \"aarch64\" or python_version >= \"3\" and platform_machine == \"ppc64le\" or python_version >= \"3\" and platform_machine == \"x86_64\" or python_version >= \"3\" and platform_machine == \"amd64\" or python_version >= \"3\" and platform_machine == \"AMD64\" or python_version >= \"3\" and platform_machine == \"win32\" or python_version >= \"3\" and platform_machine == \"WIN32\""}
 
 [package.extras]
 aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
@@ -2293,6 +2404,7 @@ sqlcipher = ["sqlcipher3-binary"]
 name = "storageclient"
 version = "0.1.0"
 description = "Python client to interact with ceph/cleversafe backend"
+category = "main"
 optional = false
 python-versions = "*"
 files = []
@@ -2320,6 +2432,7 @@ resolved_reference = "4d39265d6e478acd5e1afe6e5dc722418f887d78"
 name = "types-pyyaml"
 version = "6.0.12.11"
 description = "Typing stubs for PyYAML"
+category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2331,6 +2444,7 @@ files = [
 name = "typing-extensions"
 version = "4.7.1"
 description = "Backported and Experimental Type Hints for Python 3.7+"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2342,6 +2456,7 @@ files = [
 name = "uritemplate"
 version = "3.0.1"
 description = "URI templates"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2353,6 +2468,7 @@ files = [
 name = "urllib3"
 version = "1.25.11"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
 files = [
@@ -2369,6 +2485,7 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 name = "userdatamodel"
 version = "2.4.3"
 description = ""
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2383,6 +2500,7 @@ sqlalchemy = ">=1.3.3"
 name = "websocket-client"
 version = "1.6.1"
 description = "WebSocket client for Python with low level API options"
+category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2399,6 +2517,7 @@ test = ["websockets"]
 name = "werkzeug"
 version = "2.3.6"
 description = "The comprehensive WSGI web application library."
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2416,6 +2535,7 @@ watchdog = ["watchdog (>=2.3)"]
 name = "wrapt"
 version = "1.15.0"
 description = "Module for decorators, wrappers and monkey patching."
+category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -2500,6 +2620,7 @@ files = [
 name = "wtforms"
 version = "3.0.1"
 description = "Form validation and rendering for Python web development."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2517,6 +2638,7 @@ email = ["email-validator"]
 name = "xmltodict"
 version = "0.13.0"
 description = "Makes working with XML feel like you are working with JSON"
+category = "main"
 optional = false
 python-versions = ">=3.4"
 files = [
@@ -2528,6 +2650,7 @@ files = [
 name = "zipp"
 version = "3.16.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2542,4 +2665,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<4.0.0"
-content-hash = "ef16856b4044f82b660e419d2ea9e1feb2cdcab4268b10004e26fc54943b857f"
+content-hash = "26fc3f667debab22067efc09ffede10f05e3996aab24f2d5aee4f73e79e1fcae"

From f8156d7425c8351bafb8c2eed41f65d96786f6a4 Mon Sep 17 00:00:00 2001
From: Alex VanTol <avantol@uchicago.edu>
Date: Fri, 4 Aug 2023 14:06:14 -0500
Subject: [PATCH 09/26] chore(poetry): update authlib fork tag and relock

---
 poetry.lock    | 14 +++++++-------
 pyproject.toml |  2 +-
 2 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 6e1ede494..e4bf0fe1b 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -14,14 +14,14 @@ files = [
 
 [[package]]
 name = "alembic"
-version = "1.11.1"
+version = "1.11.2"
 description = "A database migration tool for SQLAlchemy."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "alembic-1.11.1-py3-none-any.whl", hash = "sha256:dc871798a601fab38332e38d6ddb38d5e734f60034baeb8e2db5b642fccd8ab8"},
-    {file = "alembic-1.11.1.tar.gz", hash = "sha256:6a810a6b012c88b33458fceb869aef09ac75d6ace5291915ba7fae44de372c01"},
+    {file = "alembic-1.11.2-py3-none-any.whl", hash = "sha256:7981ab0c4fad4fe1be0cf183aae17689fe394ff874fd2464adb774396faf0796"},
+    {file = "alembic-1.11.2.tar.gz", hash = "sha256:678f662130dc540dac12de0ea73de9f89caea9dbea138f60ef6263149bf84657"},
 ]
 
 [package.dependencies]
@@ -116,8 +116,8 @@ requests = "*"
 [package.source]
 type = "git"
 url = "https://github.com/uc-cdis/authlib"
-reference = "v0.11_fix/CVE-2022-39175_v1"
-resolved_reference = "e51048ad01fadd5b19578209f7ff23083360ebaa"
+reference = "v0.11_CVE_patch_v1"
+resolved_reference = "80345f2877ec2a1a29468aa465c07623347c3ef6"
 
 [[package]]
 name = "authutils"
@@ -2403,7 +2403,7 @@ sqlcipher = ["sqlcipher3-binary"]
 [[package]]
 name = "storageclient"
 version = "0.1.0"
-description = "Python client to interact with ceph/cleversafe backend"
+description = ""
 category = "main"
 optional = false
 python-versions = "*"
@@ -2665,4 +2665,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<4.0.0"
-content-hash = "26fc3f667debab22067efc09ffede10f05e3996aab24f2d5aee4f73e79e1fcae"
+content-hash = "51de5ee8af009da748bd7304d5266648018eb755a9644cad295c053b7b250344"
diff --git a/pyproject.toml b/pyproject.toml
index 23500a68e..699fcfd96 100755
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -19,7 +19,7 @@ alembic = "^1.7.7"
 # version.
 #
 # This is temporary while we work on the upgrade to the latest version
-authlib = {git = "https://github.com/uc-cdis/authlib", rev = "v0.11_fix/CVE-2022-39175_v1"}
+authlib = {git = "https://github.com/uc-cdis/authlib", rev = "v0.11_CVE_patch_v1"}
 # authlib = "*" # let authutils decide which version we're using
 
 authutils = "^6.2.2"

From 3143b1a841af21ccf9f66038b9d766913caba01d Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Wed, 28 Jun 2023 16:26:04 -0500
Subject: [PATCH 10/26] feat(DCF-1446): Assign MFA policy on login

Adds the mfa_policy on login when the configured claim and value are present in
the user's id_token.

Renames get_user_id to get_auth_info

Usersync preserves mfa_policy for user if they have it rather than revoking all
policies.
---
 .secrets.baseline                          |  11 +-
 fence/blueprints/link.py                   |   2 +-
 fence/blueprints/login/base.py             |  26 ++++-
 fence/blueprints/login/ras.py              |   2 +-
 fence/config-default.yaml                  |  15 +++
 fence/resources/openid/cilogon_oauth2.py   |   4 +-
 fence/resources/openid/cognito_oauth2.py   |   8 +-
 fence/resources/openid/google_oauth2.py    |   8 +-
 fence/resources/openid/idp_oauth2.py       |  34 +++++-
 fence/resources/openid/microsoft_oauth2.py |   8 +-
 fence/resources/openid/okta_oauth2.py      |   8 +-
 fence/resources/openid/orcid_oauth2.py     |   8 +-
 fence/resources/openid/ras_oauth2.py       |   3 +-
 fence/resources/openid/synapse_oauth2.py   |   2 +-
 fence/resources/user/user_session.py       |  10 +-
 fence/sync/sync_users.py                   |  29 +++++
 tests/conftest.py                          |   2 +-
 tests/dbgap_sync/conftest.py               |  47 +-------
 tests/dbgap_sync/test_user_sync.py         | 118 +++++++++++++++++++--
 tests/link/conftest.py                     |   2 +-
 tests/login/test_base.py                   |  56 ++++++++++
 tests/login/test_idp_oauth2.py             |  40 +++++++
 tests/login/test_microsoft_login.py        |  12 +--
 tests/test_audit_service.py                |  44 ++++----
 24 files changed, 389 insertions(+), 110 deletions(-)
 create mode 100644 tests/login/test_base.py
 create mode 100644 tests/login/test_idp_oauth2.py

diff --git a/.secrets.baseline b/.secrets.baseline
index 2423d6566..797bef715 100644
--- a/.secrets.baseline
+++ b/.secrets.baseline
@@ -315,6 +315,15 @@
         "line_number": 48
       }
     ],
+    "tests/login/test_idp_oauth2.py": [
+      {
+        "type": "Secret Keyword",
+        "filename": "tests/login/test_idp_oauth2.py",
+        "hashed_secret": "f3bbbd66a63d4bf1747940578ec3d0103530e21d",
+        "is_verified": false,
+        "line_number": 8
+      }
+    ],
     "tests/migrations/test_a04a70296688.py": [
       {
         "type": "Hex High Entropy String",
@@ -368,5 +377,5 @@
       }
     ]
   },
-  "generated_at": "2023-05-15T16:30:09Z"
+  "generated_at": "2023-07-26T23:47:35Z"
 }
diff --git a/fence/blueprints/link.py b/fence/blueprints/link.py
index 944909e51..99ac4c9fa 100644
--- a/fence/blueprints/link.py
+++ b/fence/blueprints/link.py
@@ -274,7 +274,7 @@ def get(self):
         code = flask.request.args.get("code")
 
         if not config.get("MOCK_GOOGLE_AUTH", False):
-            google_response = flask.current_app.google_client.get_user_id(code)
+            google_response = flask.current_app.google_client.get_auth_info(code)
             email = google_response.get("email")
         else:
             # if we're mocking google auth, mock response to include the email
diff --git a/fence/blueprints/login/base.py b/fence/blueprints/login/base.py
index 8827845bb..0b6ae3f95 100644
--- a/fence/blueprints/login/base.py
+++ b/fence/blueprints/login/base.py
@@ -1,4 +1,5 @@
 import flask
+from cdislogging import get_logger
 from flask_restful import Resource
 from urllib.parse import urlparse, urlencode, parse_qsl
 
@@ -7,6 +8,8 @@
 from fence.config import config
 from fence.errors import UserError
 
+logger = get_logger(__name__)
+
 
 class DefaultOAuth2Login(Resource):
     def __init__(self, idp_name, client):
@@ -63,6 +66,7 @@ def __init__(
         username_field="email",
         email_field="email",
         id_from_idp_field="sub",
+        app=flask.current_app,
     ):
         """
         Construct a resource for a login callback endpoint
@@ -84,6 +88,10 @@ def __init__(
         self.username_field = username_field
         self.email_field = email_field
         self.id_from_idp_field = id_from_idp_field
+        self.is_mfa_enabled = "multifactor_auth_claim_info" in config[
+            "OPENID_CONNECT"
+        ].get(self.idp_name, {})
+        self.app = app
 
     def get(self):
         # Check if user granted access
@@ -109,7 +117,7 @@ def get(self):
             return flask.redirect(location=final_redirect_url)
 
         code = flask.request.args.get("code")
-        result = self.client.get_user_id(code)
+        result = self.client.get_auth_info(code)
         username = result.get(self.username_field)
         if not username:
             raise UserError(
@@ -125,6 +133,22 @@ def get(self):
 
     def post_login(self, user=None, token_result=None, **kwargs):
         prepare_login_log(self.idp_name)
+        if token_result:
+            username = token_result.get(self.username_field)
+            if self.is_mfa_enabled:
+                if token_result.get("mfa"):
+                    logger.info(f"Adding mfa_policy for {username}")
+                    self.app.arborist.grant_user_policy(
+                        username=username,
+                        policy_id="mfa_policy",
+                    )
+                    return
+                else:
+                    logger.info(f"Revoking mfa_policy for {username}")
+                    self.app.arborist.revoke_user_policy(
+                        username=username,
+                        policy_id="mfa_policy",
+                    )
 
 
 def prepare_login_log(idp_name):
diff --git a/fence/blueprints/login/ras.py b/fence/blueprints/login/ras.py
index 7a9470a8a..31bd7a340 100644
--- a/fence/blueprints/login/ras.py
+++ b/fence/blueprints/login/ras.py
@@ -114,4 +114,4 @@ def post_login(self, user=None, token_result=None, id_from_idp=None):
             user=user, refresh_token=refresh_token, expires=expires + issued_time
         )
 
-        super(RASCallback, self).post_login(id_from_idp=id_from_idp)
+        super(RASCallback, self).post_login(token_result=token_result)
diff --git a/fence/config-default.yaml b/fence/config-default.yaml
index 195f99227..b49f2c0ef 100755
--- a/fence/config-default.yaml
+++ b/fence/config-default.yaml
@@ -111,6 +111,9 @@ OPENID_CONNECT:
     user_id_field: ''  # optional (default "sub"); claims field to get the user_id from
     email_field: ''  # optional (default "email"); claims field to get the user email from
     scope: ''  # optional (default "openid")
+    multifactor_auth_claim_info: # optional, include if you're using arborist to enforce mfa on a per-file level
+      claim: '' # claims field that indicates mfa, usually the acr or acm claim.
+      values: [ "" ] # possible values that indicate mfa was used. Not all values configured here are required to be in the token
   # These Google values must be obtained from Google's Cloud Console
   # Follow: https://developers.google.com/identity/protocols/OpenIDConnect
   #
@@ -181,6 +184,9 @@ OPENID_CONNECT:
     client_secret: ''
     redirect_url: '{{BASE_URL}}/login/ras/callback'
     scope: 'openid email profile ga4gh_passport_v1'
+#    multifactor_auth_claim_info:
+#      claim: 'acr'
+#      values: [ "https://sts.nih.gov/assurance/aal/2", "urn:gov:gsa:ac:classes:sp:PasswordProtectedTransport:duo" ]
     # if mock is true, will fake a successful login response for login
     # WARNING: DO NOT ENABLE IN PRODUCTION (for testing purposes only)
     mock: false
@@ -207,6 +213,9 @@ OPENID_CONNECT:
     # WARNING: DO NOT ENABLE IN PRODUCTION (for testing purposes only)
     mock: false
     mock_default_user: 'test@example.com'
+    #    multifactor_auth_claim_info:
+    #      claim: 'amr'
+    #      values: [ "mfa", "otp", "rsa", "ngcmfa", "wiaormfa" ]
   # For information on configuring an Okta tenant as an OIDC IdP refer to Okta documentation at:
   # https://developer.okta.com/docs/reference/api/oidc/#2-okta-as-the-identity-platform-for-your-app-or-api
   okta:
@@ -215,6 +224,9 @@ OPENID_CONNECT:
     client_secret: ''
     redirect_url: '{{BASE_URL}}/login/okta/login/'
     scope: 'openid email'
+    #    multifactor_auth_claim_info:
+    #      claim: 'amr'
+    #      values: [ "mfa", "otp", "sms" ]
   cognito:
     # You must create a user pool in order to have a discovery url
     discovery_url: 'https://cognito-idp.{REGION}.amazonaws.com/{USER-POOL-ID}/.well-known/openid-configuration'
@@ -241,6 +253,9 @@ OPENID_CONNECT:
     # WARNING: DO NOT ENABLE IN PRODUCTION (for testing purposes only)
     mock: false
     mock_default_user: 'http://cilogon.org/serverT/users/64703'
+    #    multifactor_auth_claim_info:
+    #      claim: 'acr'
+    #      values: [ "https://refeds.org/profile/mfa" ]
   synapse:
     discovery_url: ''
     client_id: ''
diff --git a/fence/resources/openid/cilogon_oauth2.py b/fence/resources/openid/cilogon_oauth2.py
index 50d79c9c7..212f2d31f 100644
--- a/fence/resources/openid/cilogon_oauth2.py
+++ b/fence/resources/openid/cilogon_oauth2.py
@@ -31,7 +31,7 @@ def get_auth_url(self):
 
         return uri
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         try:
             token_endpoint = self.get_value_from_discovery_doc(
                 "token_endpoint", "https://cilogon.org/oauth2/token"
@@ -42,7 +42,7 @@ def get_user_id(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("sub"):
-                return {"sub": claims["sub"]}
+                return {"sub": claims["sub"], "mfa": self.has_mfa_claim(claims)}
             else:
                 return {"error": "Can't get user's CILogon sub"}
         except Exception as e:
diff --git a/fence/resources/openid/cognito_oauth2.py b/fence/resources/openid/cognito_oauth2.py
index 883d94c5c..1b68592f6 100644
--- a/fence/resources/openid/cognito_oauth2.py
+++ b/fence/resources/openid/cognito_oauth2.py
@@ -37,7 +37,7 @@ def get_auth_url(self):
 
         return uri
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         """
         Exchange code for tokens, get email from id token claims.
         Return dict with "email" field on success OR "error" field on error.
@@ -53,7 +53,11 @@ def get_user_id(self, code):
                 claims.get("email_verified")
                 or self.settings.get("assume_emails_verified")
             ):
-                return {"email": claims["email"], "sub": claims.get("sub")}
+                return {
+                    "email": claims["email"],
+                    "sub": claims.get("sub"),
+                    "mfa": self.has_mfa_claim(claims),
+                }
             elif claims.get("email"):
                 return {"error": "Email is not verified"}
             else:
diff --git a/fence/resources/openid/google_oauth2.py b/fence/resources/openid/google_oauth2.py
index 10fdc41d3..d0fd4c2bc 100644
--- a/fence/resources/openid/google_oauth2.py
+++ b/fence/resources/openid/google_oauth2.py
@@ -34,7 +34,7 @@ def get_auth_url(self):
 
         return uri
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         """
         Get user id
         """
@@ -50,7 +50,11 @@ def get_user_id(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("email") and claims.get("email_verified"):
-                return {"email": claims["email"], "sub": claims.get("sub")}
+                return {
+                    "email": claims["email"],
+                    "sub": claims.get("sub"),
+                    "mfa": self.has_mfa_claim(claims),
+                }
             elif claims.get("email"):
                 return {"error": "Email is not verified"}
             else:
diff --git a/fence/resources/openid/idp_oauth2.py b/fence/resources/openid/idp_oauth2.py
index 68e9a41b7..ea22d3d22 100644
--- a/fence/resources/openid/idp_oauth2.py
+++ b/fence/resources/openid/idp_oauth2.py
@@ -154,7 +154,7 @@ def get_auth_url(self):
         )
         return uri
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         """
         Exchange code for tokens, get user_id from id token claims.
         Return dictionary with necessary field(s) for successfully logged in
@@ -169,7 +169,10 @@ def get_user_id(self, code):
             if claims.get(user_id_field):
                 if user_id_field == "email" and not claims.get("email_verified"):
                     return {"error": "Email is not verified"}
-                return {user_id_field: claims[user_id_field]}
+                return {
+                    user_id_field: claims[user_id_field],
+                    "mfa": self.has_mfa_claim(claims),
+                }
             else:
                 self.logger.exception(
                     f"Can't get {user_id_field} from claims: {claims}"
@@ -220,6 +223,33 @@ def get_access_token(self, user, token_endpoint, db_session=None):
 
         return token_response
 
+    def has_mfa_claim(self, decoded_id_token):
+        """
+        Determines if the claim denoting whether multifactor authentication was used is contained within the claims
+        of the provided id_token.
+
+        Parameters:
+        - decoded_id_token (dict): The decoded id_token, a dict of claims -> claim values.
+
+        """
+        mfa_claim_info = self.settings.get("multifactor_auth_claim_info")
+        if not mfa_claim_info:
+            return False
+        claim_name = mfa_claim_info.get("claim")
+        mfa_values = mfa_claim_info.get("values")
+        if not claim_name or not mfa_values:
+            self.logger.warning(
+                f"{self.idp} has a configured multifactor_auth_claim_info with a missing claim name "
+                f"and values. Please check the OPENID_CONNECT settings for {self.idp} in the fence "
+                f"config yaml."
+            )
+            return False
+        mfa_claims = decoded_id_token.get(claim_name).split(" ")
+        self.logger.info(
+            f"Comparing token's {claim_name} claims: {mfa_claims} to mfa values {mfa_values}"
+        )
+        return len(set(mfa_claims) & set(mfa_values)) > 0
+
     def store_refresh_token(self, user, refresh_token, expires, db_session=None):
         """
         Store refresh token in db.
diff --git a/fence/resources/openid/microsoft_oauth2.py b/fence/resources/openid/microsoft_oauth2.py
index 82bb2cc4d..da823d0d3 100755
--- a/fence/resources/openid/microsoft_oauth2.py
+++ b/fence/resources/openid/microsoft_oauth2.py
@@ -35,7 +35,7 @@ def get_auth_url(self):
 
         return uri
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         """
         Get user id given an authorization code
         """
@@ -51,7 +51,11 @@ def get_user_id(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("email"):
-                return {"email": claims["email"], "sub": claims.get("sub")}
+                return {
+                    "email": claims["email"],
+                    "sub": claims.get("sub"),
+                    "mfa": self.has_mfa_claim(claims),
+                }
             return {"error": "Can't get user's Microsoft email!"}
         except Exception as exception:
             self.logger.exception("Can't get user info")
diff --git a/fence/resources/openid/okta_oauth2.py b/fence/resources/openid/okta_oauth2.py
index 6ce062420..8e8abfba4 100644
--- a/fence/resources/openid/okta_oauth2.py
+++ b/fence/resources/openid/okta_oauth2.py
@@ -27,7 +27,7 @@ def get_auth_url(self):
 
         return uri
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         try:
             token_endpoint = self.get_value_from_discovery_doc(
                 "token_endpoint",
@@ -40,7 +40,11 @@ def get_user_id(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("email"):
-                return {"email": claims["email"], "sub": claims.get("sub")}
+                return {
+                    "email": claims["email"],
+                    "sub": claims.get("sub"),
+                    "mfa": self.has_mfa_claim(claims),
+                }
             else:
                 return {"error": "Can't get user's email!"}
         except Exception as e:
diff --git a/fence/resources/openid/orcid_oauth2.py b/fence/resources/openid/orcid_oauth2.py
index 7388f7f83..15caa7445 100644
--- a/fence/resources/openid/orcid_oauth2.py
+++ b/fence/resources/openid/orcid_oauth2.py
@@ -33,7 +33,7 @@ def get_auth_url(self):
 
         return uri
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         try:
             token_endpoint = self.get_value_from_discovery_doc(
                 "token_endpoint", "https://orcid.org/oauth/token"
@@ -44,7 +44,11 @@ def get_user_id(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("sub"):
-                return {"orcid": claims["sub"], "sub": claims["sub"]}
+                return {
+                    "orcid": claims["sub"],
+                    "sub": claims["sub"],
+                    "mfa": self.has_mfa_claim(claims),
+                }
             else:
                 return {"error": "Can't get user's orcid"}
         except Exception as e:
diff --git a/fence/resources/openid/ras_oauth2.py b/fence/resources/openid/ras_oauth2.py
index c894e5d36..b94897b87 100644
--- a/fence/resources/openid/ras_oauth2.py
+++ b/fence/resources/openid/ras_oauth2.py
@@ -117,7 +117,7 @@ def get_encoded_visas_v11_userinfo(self, userinfo, pkey_cache=None):
             )
         )
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         err_msg = "Unable to parse UserID from RAS userinfo response"
 
         try:
@@ -189,6 +189,7 @@ def get_user_id(self, code):
             "username": username,
             "email": userinfo.get("email"),
             "sub": userinfo.get("sub"),
+            "mfa": self.has_mfa_claim(claims),
         }
 
     def map_iss_sub_pair_to_user(
diff --git a/fence/resources/openid/synapse_oauth2.py b/fence/resources/openid/synapse_oauth2.py
index 069bf2151..ebda3cab8 100644
--- a/fence/resources/openid/synapse_oauth2.py
+++ b/fence/resources/openid/synapse_oauth2.py
@@ -98,7 +98,7 @@ def load_key(self, jwks_endpoint):
 
         return None, None
 
-    def get_user_id(self, code):
+    def get_auth_info(self, code):
         try:
             token_endpoint = self.get_value_from_discovery_doc(
                 "token_endpoint", config["SYNAPSE_URI"] + "/oauth2/token"
diff --git a/fence/resources/user/user_session.py b/fence/resources/user/user_session.py
index b17ffb775..326c84860 100644
--- a/fence/resources/user/user_session.py
+++ b/fence/resources/user/user_session.py
@@ -204,7 +204,7 @@ def save_session(self, app, session, response):
             except Unauthorized:
                 user = None
 
-            user_sess_id = _get_user_id_from_session(session)
+            user_sess_id = _get_auth_info_from_session(session)
 
             # user_id == '' in session means no login has occured, which is
             # okay if user is hitting with just an access_token
@@ -288,8 +288,8 @@ def _get_valid_access_token(app, session, request):
         return None
 
     # check that the current user is the one from the session and access_token
-    user_sess_id = _get_user_id_from_session(session)
-    token_user_id = _get_user_id_from_access_token(valid_access_token)
+    user_sess_id = _get_auth_info_from_session(session)
+    token_user_id = _get_auth_info_from_access_token(valid_access_token)
 
     if user.id != user_sess_id and user.username != user_sess_id:
         return None
@@ -349,7 +349,7 @@ def _create_access_token_cookie(app, session, response, user):
     return response
 
 
-def _get_user_id_from_session(session):
+def _get_auth_info_from_session(session):
     """
     Get user's identifier from the session. It could be their id or username
     since both are unique.
@@ -365,7 +365,7 @@ def _get_user_id_from_session(session):
     return user_sess_id
 
 
-def _get_user_id_from_access_token(access_token):
+def _get_auth_info_from_access_token(access_token):
     """
     Get user's identifier from the access token claims
     """
diff --git a/fence/sync/sync_users.py b/fence/sync/sync_users.py
index ea3910f2f..19baaa7f4 100644
--- a/fence/sync/sync_users.py
+++ b/fence/sync/sync_users.py
@@ -1868,6 +1868,35 @@ def _update_arborist(self, session, user_yaml):
 
         return True
 
+    def _revoke_all_policies_preserve_mfa(self, user):
+        """
+        If MFA is enabled for the user's idp, check if they have the /multifactor_auth resource and restore the
+        mfa_policy after revoking all policies.
+        """
+        has_revoked_policies = False
+        try:
+            username = user.username
+            idp = user.identity_provider.name if user.identity_provider else None
+
+            is_mfa_enabled = "multifactor_auth_claim_info" in config[
+                "OPENID_CONNECT"
+            ].get(idp, {})
+            if not is_mfa_enabled:
+                self.arborist_client.revoke_all_policies_for_user(username)
+                return
+
+            resources = self.arborist_client.list_resources_for_user(username)
+            # TODO This should be a diff, not a revocation of all policies.
+            self.arborist_client.revoke_all_policies_for_user(username)
+            has_revoked_policies = True
+            if "/multifactor_auth" in resources:
+                self.arborist_client.grant_user_policy(username, "mfa_policy")
+        except Exception as e:
+            self.logger.error(f"Error attempting to preserve MFA policy. {e}")
+            if not has_revoked_policies:
+                self.logger.error(f"Revoking all policies for user {user.username}")
+                self.arborist_client.revoke_all_policies_for_user(username)
+
     def _update_authz_in_arborist(
         self,
         session,
diff --git a/tests/conftest.py b/tests/conftest.py
index 5b9e6c7b0..4d64df3a8 100755
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -377,7 +377,7 @@ def return_false():
 @pytest.fixture(scope="function")
 def mock_arborist_requests(request):
     """
-    This fixture returns a function which you call to mock out arborist endopints.
+    This fixture returns a function which you call to mock out arborist endpoints.
     Give it an argument in this format:
         {
             "arborist/health": {
diff --git a/tests/dbgap_sync/conftest.py b/tests/dbgap_sync/conftest.py
index e80564fa7..48907ba5b 100644
--- a/tests/dbgap_sync/conftest.py
+++ b/tests/dbgap_sync/conftest.py
@@ -99,51 +99,6 @@ def syncer(db_session, request, rsa_private_key, kid):
     storage_credentials = {str(backend_name): {"backend": backend}}
     provider = [{"name": backend_name, "backend": backend}]
 
-    users = [
-        {
-            "username": "TESTUSERB",
-            "is_admin": True,
-            "email": "userA@gmail.com",
-            "idp_name": "ras",
-        },
-        {
-            "username": "USER_1",
-            "is_admin": True,
-            "email": "user1@gmail.com",
-            "idp_name": "ras",
-        },
-        {
-            "username": "test_user1@gmail.com",
-            "is_admin": False,
-            "email": "test_user1@gmail.com",
-            "idp_name": "ras",
-        },
-        {
-            "username": "deleted_user@gmail.com",
-            "is_admin": True,
-            "email": "deleted_user@gmail.com",
-            "idp_name": "ras",
-        },
-        {
-            "username": "TESTUSERD",
-            "is_admin": True,
-            "email": "userD@gmail.com",
-            "idp_name": "ras",
-        },
-        {
-            "username": "expired_visa_user",
-            "is_admin": False,
-            "email": "expired@expired.com",
-            "idp_name": "ras",
-        },
-        {
-            "username": "invalid_visa_user",
-            "is_admin": False,
-            "email": "invalid@invalid.com",
-            "idp_name": "ras",
-        },
-    ]
-
     projects = [
         {
             "auth_id": "TCGA-PCAWG",
@@ -221,6 +176,8 @@ def mocked_get(path, **kwargs):
 
     syncer_obj._create_arborist_resources = MagicMock()
 
+    syncer_obj.arborist_client.revoke_all_policies_for_user = MagicMock()
+
     for element in provider:
         udm.create_provider(db_session, element["name"], backend=element["backend"])
 
diff --git a/tests/dbgap_sync/test_user_sync.py b/tests/dbgap_sync/test_user_sync.py
index ab638723a..6300dfc2c 100644
--- a/tests/dbgap_sync/test_user_sync.py
+++ b/tests/dbgap_sync/test_user_sync.py
@@ -1,30 +1,23 @@
 import os
 import pytest
-import yaml
 import collections
 
 import asyncio
-import flask
 from unittest.mock import MagicMock, patch
 import mock
+from userdatamodel.user import IdentityProvider
 
 from fence import models
-from fence.resources.google import access_utils
-from fence.resources.google.access_utils import (
-    GoogleUpdateException,
-    bulk_update_google_groups,
-)
-from fence.sync.sync_users import _format_policy_id
+from fence.resources.google.access_utils import GoogleUpdateException
 from fence.config import config
 from fence.job.visa_update_cronjob import Visa_Token_Update
-from tests.dbgap_sync.conftest import LOCAL_YAML_DIR
 
-from tests.utils import TEST_RAS_USERNAME, TEST_RAS_SUB
 from tests.dbgap_sync.conftest import (
     get_test_encoded_decoded_visa_and_exp,
     fake_ras_login,
 )
 from tests.conftest import get_subjects_to_passports
+from fence.models import User
 
 
 def equal_project_access(d1, d2):
@@ -1038,3 +1031,108 @@ def test_user_sync_with_visa_sync_job(
             setup_info["usernames_to_ras_subjects"][valid_user.username]
         ]
     )
+
+
+@pytest.mark.parametrize("syncer", ["cleversafe", "google"], indirect=True)
+def test_revoke_all_policies_preserve_mfa(monkeypatch, db_session, syncer):
+    """
+    Test that the mfa_policy is re-granted to the user after revoking all their policies.
+    """
+    monkeypatch.setitem(
+        config,
+        "OPENID_CONNECT",
+        {
+            "mock_idp": {
+                "multifactor_auth_claim_info": {"claim": "acr", "values": ["mfa"]}
+            }
+        },
+    )
+    user = User(
+        username="mockuser", identity_provider=IdentityProvider(name="mock_idp")
+    )
+    syncer.arborist_client.list_resources_for_user.return_value = ["/multifactor_auth"]
+    syncer._revoke_all_policies_preserve_mfa(user)
+    syncer.arborist_client.revoke_all_policies_for_user.assert_called_with(
+        user.username
+    )
+    syncer.arborist_client.grant_user_policy.assert_called_with(
+        user.username, "mfa_policy"
+    )
+
+
+@pytest.mark.parametrize("syncer", ["cleversafe", "google"], indirect=True)
+def test_revoke_all_policies_preserve_mfa_no_mfa(monkeypatch, db_session, syncer):
+    """
+    Test to ensure the mfa_policy preservation does not occur if the user does not have the mfa resource granted.
+    """
+    monkeypatch.setitem(
+        config,
+        "OPENID_CONNECT",
+        {
+            "mock_idp": {
+                "multifactor_auth_claim_info": {"claim": "acr", "values": ["mfa"]}
+            }
+        },
+    )
+    user = User(
+        username="mockuser", identity_provider=IdentityProvider(name="mock_idp")
+    )
+    syncer.arborist_client.list_resources_for_user.return_value = [
+        "/programs/phs0001111"
+    ]
+    syncer._revoke_all_policies_preserve_mfa(user)
+    syncer.arborist_client.revoke_all_policies_for_user.assert_called_with(
+        user.username
+    )
+    syncer.arborist_client.grant_user_policy.assert_not_called()
+
+
+@pytest.mark.parametrize("syncer", ["cleversafe", "google"], indirect=True)
+def test_revoke_all_policies_preserve_mfa_no_idp(monkeypatch, db_session, syncer):
+    """
+    Tests for when no IDP is associated with the user
+    """
+    monkeypatch.setitem(
+        config,
+        "OPENID_CONNECT",
+        {
+            "mock_idp": {
+                "multifactor_auth_claim_info": {"claim": "acr", "values": ["mfa"]}
+            }
+        },
+    )
+    user = User(username="mockuser")
+    syncer._revoke_all_policies_preserve_mfa(user)
+    syncer.arborist_client.revoke_all_policies_for_user.assert_called_with(
+        user.username
+    )
+    syncer.arborist_client.grant_user_policy.assert_not_called()
+    syncer.arborist_client.list_resources_for_user.assert_not_called()
+
+
+@pytest.mark.parametrize("syncer", ["cleversafe", "google"], indirect=True)
+def test_revoke_all_policies_preserve_mfa_ensure_revoke_on_error(
+    monkeypatch, db_session, syncer
+):
+    """
+    Tests that arborist_client.revoke_all_policies is still called when an error occurs
+    """
+    monkeypatch.setitem(
+        config,
+        "OPENID_CONNECT",
+        {
+            "mock_idp": {
+                "multifactor_auth_claim_info": {"claim": "acr", "values": ["mfa"]}
+            }
+        },
+    )
+    user = User(
+        username="mockuser", identity_provider=IdentityProvider(name="mock_idp")
+    )
+    syncer.arborist_client.list_resources_for_user.side_effect = Exception(
+        "Unknown error"
+    )
+    syncer._revoke_all_policies_preserve_mfa(user)
+    syncer.arborist_client.revoke_all_policies_for_user.assert_called_with(
+        user.username
+    )
diff --git a/tests/link/conftest.py b/tests/link/conftest.py
index 432dad6e4..c9292a7d2 100644
--- a/tests/link/conftest.py
+++ b/tests/link/conftest.py
@@ -21,7 +21,7 @@ def add_new_g_acnt_mock(db_session):
 @pytest.fixture(scope="function")
 def google_auth_get_user_info_mock():
     mock = MagicMock()
-    patcher = patch("flask.current_app.google_client.get_user_id", mock)
+    patcher = patch("flask.current_app.google_client.get_auth_info", mock)
     patcher.start()
 
     yield mock
diff --git a/tests/login/test_base.py b/tests/login/test_base.py
new file mode 100644
index 000000000..a9bfff7ec
--- /dev/null
+++ b/tests/login/test_base.py
@@ -0,0 +1,56 @@
+from fence.blueprints.login import DefaultOAuth2Callback
+from fence.config import config
+from unittest.mock import MagicMock, patch
+
+
+@patch("fence.blueprints.login.base.prepare_login_log")
+def test_post_login_set_mfa(app, monkeypatch):
+    """
+    Verifies the arborist is called with the mfa_policy if a given token contains the claims found in the
+    configured multifactor_auth_claim_info
+    """
+    monkeypatch.setitem(
+        config,
+        "OPENID_CONNECT",
+        {
+            "mock_idp": {
+                "multifactor_auth_claim_info": {"claim": "acr", "values": ["mfa"]}
+            }
+        },
+    )
+    callback = DefaultOAuth2Callback(
+        "mock_idp", MagicMock(), username_field="username", app=app
+    )
+
+    app.arborist = MagicMock()
+    token_result = {"username": "lisasimpson", "mfa": True}
+    callback.post_login(token_result=token_result)
+    app.arborist.grant_user_policy.assert_called_with(
+        username=token_result["username"], policy_id="mfa_policy"
+    )
+
+    token_result = {"username": "homersimpson", "mfa": False}
+    callback.post_login(token_result=token_result)
+    app.arborist.revoke_user_policy.assert_called_with(
+        username=token_result["username"], policy_id="mfa_policy"
+    )
+
+
+@patch("fence.blueprints.login.base.prepare_login_log")
+def test_post_login_no_mfa_enabled(app, monkeypatch):
+    """
+    Verifies arborist is not called when there is no multifactor_auth_claim_info defined for the given IDP.
+    """
+    app.arborist = MagicMock()
+    monkeypatch.setitem(
+        config,
+        "OPENID_CONNECT",
+        {"mock_idp": {}},
+    )
+    with app.app_context():
+        callback = DefaultOAuth2Callback(
+            "mock_idp", MagicMock(), username_field="username"
+        )
+        token_result = {"username": "lisasimpson"}
+        callback.post_login(token_result=token_result)
+        app.arborist.revoke_user_policy.assert_not_called()
diff --git a/tests/login/test_idp_oauth2.py b/tests/login/test_idp_oauth2.py
new file mode 100644
index 000000000..dfc56d95a
--- /dev/null
+++ b/tests/login/test_idp_oauth2.py
@@ -0,0 +1,40 @@
+import pytest
+from cdislogging import get_logger
+
+from fence import Oauth2ClientBase
+
+MOCK_SETTINGS = {
+    "client_id": "client",
+    "client_secret": "hunter2",
+    "redirect_url": "localhost",
+    "multifactor_auth_claim_info": {
+        "claim": "acr",
+        "values": ["mfa", "otp", "duo", "sms", "phonecall"],
+    },
+}
+logger = get_logger(__name__, log_level="debug")
+
+
+@pytest.fixture()
+def oauth_client():
+    return Oauth2ClientBase(settings=MOCK_SETTINGS, idp="mock", logger=logger)
+
+
+def test_has_mfa_claim(oauth_client):
+    has_mfa = oauth_client.has_mfa_claim({"acr": "mfa"})
+    assert has_mfa
+
+
+def test_has_mfa_claim_multiple_acr(oauth_client):
+    has_mfa = oauth_client.has_mfa_claim({"acr": "mfa otp duo"})
+    assert has_mfa
+
+
+def test_does_not_has_mfa_claim(oauth_client):
+    has_mfa = oauth_client.has_mfa_claim({"acr": "pwd"})
+    assert not has_mfa
+
+
+def test_does_not_has_mfa_claim_multiple(oauth_client):
+    has_mfa = oauth_client.has_mfa_claim({"acr": "pwd trustme"})
+    assert not has_mfa
diff --git a/tests/login/test_microsoft_login.py b/tests/login/test_microsoft_login.py
index 23343a7d2..972b8a07f 100755
--- a/tests/login/test_microsoft_login.py
+++ b/tests/login/test_microsoft_login.py
@@ -13,7 +13,7 @@ def test_get_auth_url(microsoft_oauth2_client):
     assert url  # nosec
 
 
-def test_get_user_id(microsoft_oauth2_client):
+def test_get_auth_info(microsoft_oauth2_client):
     """
     Test getting a user id and check for email claim
     """
@@ -23,12 +23,12 @@ def test_get_user_id(microsoft_oauth2_client):
         "fence.resources.openid.idp_oauth2.Oauth2ClientBase.get_jwt_claims_identity",
         return_value=return_value,
     ):
-        user_id = microsoft_oauth2_client.get_user_id(code="123")
+        user_id = microsoft_oauth2_client.get_auth_info(code="123")
         for key, value in expected_value.items():
             assert return_value[key] == value
 
 
-def test_get_user_id_missing_claim(microsoft_oauth2_client):
+def test_get_auth_info_missing_claim(microsoft_oauth2_client):
     """
     Test getting a user id but missing the email claim
     """
@@ -38,15 +38,15 @@ def test_get_user_id_missing_claim(microsoft_oauth2_client):
         "fence.resources.openid.idp_oauth2.Oauth2ClientBase.get_jwt_claims_identity",
         return_value=return_value,
     ):
-        user_id = microsoft_oauth2_client.get_user_id(code="123")
+        user_id = microsoft_oauth2_client.get_auth_info(code="123")
         assert user_id == expected_value  # nosec
 
 
-def test_get_user_id_invalid_code(microsoft_oauth2_client):
+def test_get_auth_info_invalid_code(microsoft_oauth2_client):
     """
     Test getting a user id but with an invalid code
     """
     expected_value = "Can't get your Microsoft email:"
 
-    user_id = microsoft_oauth2_client.get_user_id(code="123")
+    user_id = microsoft_oauth2_client.get_auth_info(code="123")
     assert expected_value in user_id["error"]  # nosec
diff --git a/tests/test_audit_service.py b/tests/test_audit_service.py
index c5f210979..c3f8035a2 100644
--- a/tests/test_audit_service.py
+++ b/tests/test_audit_service.py
@@ -400,27 +400,27 @@ def test_login_log_login_endpoint(
     callback_endpoint = "login"
     idp_name = idp
     headers = {}
-    get_user_id_value = {}
+    get_auth_info_value = {}
     jwt_string = jwt.encode(
         {"iat": int(time.time())}, key=rsa_private_key, algorithm="RS256"
     )
 
     if idp == "synapse":
-        get_user_id_value = {
+        get_auth_info_value = {
             "fence_username": username,
             "sub": username,
             "given_name": username,
             "family_name": username,
         }
     elif idp == "orcid":
-        get_user_id_value = {"orcid": username}
+        get_auth_info_value = {"orcid": username}
     elif idp == "cilogon":
-        get_user_id_value = {"sub": username}
+        get_auth_info_value = {"sub": username}
     elif idp == "shib":
         headers["persistent_id"] = username
         idp_name = "itrust"
     elif idp == "okta":
-        get_user_id_value = {"okta": username}
+        get_auth_info_value = {"okta": username}
     elif idp == "fence":
         mocked_fetch_access_token = MagicMock(return_value={"id_token": jwt_string})
         patch(
@@ -434,7 +434,7 @@ def test_login_log_login_endpoint(
             f"fence.blueprints.login.fence_login.validate_jwt", mocked_validate_jwt
         ).start()
     elif idp == "ras":
-        get_user_id_value = {"username": username}
+        get_auth_info_value = {"username": username}
         callback_endpoint = "callback"
         # these should be populated by a /login/<idp> call that we're skipping:
         flask.g.userinfo = {"sub": "testSub123"}
@@ -444,20 +444,20 @@ def test_login_log_login_endpoint(
         }
         flask.g.encoded_visas = ""
     elif idp == "generic1":
-        get_user_id_value = {"generic1_username": username}
+        get_auth_info_value = {"generic1_username": username}
     elif idp == "generic2":
-        get_user_id_value = {"sub": username}
+        get_auth_info_value = {"sub": username}
 
     if idp in ["google", "microsoft", "okta", "synapse", "cognito"]:
-        get_user_id_value["email"] = username
+        get_auth_info_value["email"] = username
 
-    get_user_id_patch = None
-    if get_user_id_value:
-        mocked_get_user_id = MagicMock(return_value=get_user_id_value)
-        get_user_id_patch = patch(
-            f"flask.current_app.{idp}_client.get_user_id", mocked_get_user_id
+    get_auth_info_patch = None
+    if get_auth_info_value:
+        mocked_get_auth_info = MagicMock(return_value=get_auth_info_value)
+        get_auth_info_patch = patch(
+            f"flask.current_app.{idp}_client.get_auth_info", mocked_get_auth_info
         )
-        get_user_id_patch.start()
+        get_auth_info_patch.start()
 
     with audit_service_mocker as audit_service_requests:
         audit_service_requests.post.return_value = MockResponse(
@@ -481,8 +481,8 @@ def test_login_log_login_endpoint(
             },
         )
 
-    if get_user_id_patch:
-        get_user_id_patch.stop()
+    if get_auth_info_patch:
+        get_auth_info_patch.stop()
 
 
 ##########################
@@ -599,11 +599,11 @@ def test_login_log_push_to_sqs(
     mocked_sqs = mock_audit_service_sqs(app)
 
     username = "test@test"
-    mocked_get_user_id = MagicMock(return_value={"email": username})
-    get_user_id_patch = patch(
-        "flask.current_app.google_client.get_user_id", mocked_get_user_id
+    mocked_get_auth_info = MagicMock(return_value={"email": username})
+    get_auth_info_patch = patch(
+        "flask.current_app.google_client.get_auth_info", mocked_get_auth_info
     )
-    get_user_id_patch.start()
+    get_auth_info_patch.start()
 
     path = "/login/google/login"
     response = client.get(path)
@@ -611,4 +611,4 @@ def test_login_log_push_to_sqs(
     # not checking the parameters here because we can't json.dumps "sub: ANY"
     mocked_sqs.send_message.assert_called_once()
 
-    get_user_id_patch.stop()
+    get_auth_info_patch.stop()

From 0ce9fd966c734445871ba9f85bdef35653d6e987 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Thu, 3 Aug 2023 12:50:36 -0500
Subject: [PATCH 11/26] Use _revoke_all_policies_preserve_mfa

---
 fence/sync/sync_users.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/fence/sync/sync_users.py b/fence/sync/sync_users.py
index 19baaa7f4..219266770 100644
--- a/fence/sync/sync_users.py
+++ b/fence/sync/sync_users.py
@@ -2002,8 +2002,7 @@ def _update_authz_in_arborist(
 
             self.arborist_client.create_user_if_not_exist(username)
             if not single_user_sync:
-                # TODO make this smarter - it should do a diff, not revoke all and add
-                self.arborist_client.revoke_all_policies_for_user(username)
+                self._revoke_all_policies_preserve_mfa(user)
 
             # as of 2/11/2022, for single_user_sync, as RAS visa parsing has
             # previously mapped each project to the same set of privileges

From 26e575bab469c5657309e95c58923046b239a7db Mon Sep 17 00:00:00 2001
From: burtonk <117617405+k-burt-uch@users.noreply.github.com>
Date: Fri, 4 Aug 2023 14:41:55 -0500
Subject: [PATCH 12/26] Update fence/config-default.yaml

Co-authored-by: Pauline Ribeyre <4224001+paulineribeyre@users.noreply.github.com>
---
 fence/config-default.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/fence/config-default.yaml b/fence/config-default.yaml
index b49f2c0ef..00e80ba71 100755
--- a/fence/config-default.yaml
+++ b/fence/config-default.yaml
@@ -113,7 +113,7 @@ OPENID_CONNECT:
     scope: ''  # optional (default "openid")
     multifactor_auth_claim_info: # optional, include if you're using arborist to enforce mfa on a per-file level
       claim: '' # claims field that indicates mfa, usually the acr or acm claim.
-      values: [ "" ] # possible values that indicate mfa was used. Not all values configured here are required to be in the token
+      values: [ "" ] # possible values that indicate mfa was used. At least one value configured here is required to be in the token
   # These Google values must be obtained from Google's Cloud Console
   # Follow: https://developers.google.com/identity/protocols/OpenIDConnect
   #

From e0d47017ba36fecd4c7174dc8f2aca6f17555a1f Mon Sep 17 00:00:00 2001
From: burtonk <117617405+k-burt-uch@users.noreply.github.com>
Date: Fri, 4 Aug 2023 14:42:29 -0500
Subject: [PATCH 13/26] Update tests/login/test_idp_oauth2.py

Co-authored-by: Pauline Ribeyre <4224001+paulineribeyre@users.noreply.github.com>
---
 tests/login/test_idp_oauth2.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tests/login/test_idp_oauth2.py b/tests/login/test_idp_oauth2.py
index dfc56d95a..2bc8a3f55 100644
--- a/tests/login/test_idp_oauth2.py
+++ b/tests/login/test_idp_oauth2.py
@@ -34,6 +34,9 @@ def test_does_not_has_mfa_claim(oauth_client):
     has_mfa = oauth_client.has_mfa_claim({"acr": "pwd"})
     assert not has_mfa
 
+    has_mfa = oauth_client.has_mfa_claim({"something": "mfa"})
+    assert not has_mfa
+
 
 def test_does_not_has_mfa_claim_multiple(oauth_client):
     has_mfa = oauth_client.has_mfa_claim({"acr": "pwd trustme"})

From 44e14bb3a2db55d6e21eade8164e1f694cb4c82a Mon Sep 17 00:00:00 2001
From: burtonk <117617405+k-burt-uch@users.noreply.github.com>
Date: Fri, 4 Aug 2023 14:45:03 -0500
Subject: [PATCH 14/26] Update fence/resources/openid/idp_oauth2.py

Co-authored-by: Pauline Ribeyre <4224001+paulineribeyre@users.noreply.github.com>
---
 fence/resources/openid/idp_oauth2.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/fence/resources/openid/idp_oauth2.py b/fence/resources/openid/idp_oauth2.py
index ea22d3d22..00676663a 100644
--- a/fence/resources/openid/idp_oauth2.py
+++ b/fence/resources/openid/idp_oauth2.py
@@ -244,7 +244,7 @@ def has_mfa_claim(self, decoded_id_token):
                 f"config yaml."
             )
             return False
-        mfa_claims = decoded_id_token.get(claim_name).split(" ")
+        mfa_claims = decoded_id_token.get(claim_name, "").split(" ")
         self.logger.info(
             f"Comparing token's {claim_name} claims: {mfa_claims} to mfa values {mfa_values}"
         )

From 3e426d3810692d57d28113ce07d18699e7d9af91 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Fri, 4 Aug 2023 16:47:33 -0500
Subject: [PATCH 15/26] Smaller try/catch blocks

---
 fence/sync/sync_users.py | 33 +++++++++++++++------------------
 1 file changed, 15 insertions(+), 18 deletions(-)

diff --git a/fence/sync/sync_users.py b/fence/sync/sync_users.py
index 219266770..7e938105a 100644
--- a/fence/sync/sync_users.py
+++ b/fence/sync/sync_users.py
@@ -1873,29 +1873,26 @@ def _revoke_all_policies_preserve_mfa(self, user):
         If MFA is enabled for the user's idp, check if they have the /multifactor_auth resource and restore the
         mfa_policy after revoking all policies.
         """
-        has_revoked_policies = False
-        try:
-            username = user.username
-            idp = user.identity_provider.name if user.identity_provider else None
-
-            is_mfa_enabled = "multifactor_auth_claim_info" in config[
-                "OPENID_CONNECT"
-            ].get(idp, {})
-            if not is_mfa_enabled:
-                self.arborist_client.revoke_all_policies_for_user(username)
-                return
+        username = user.username
+        idp = user.identity_provider.name if user.identity_provider else None
 
+        is_mfa_enabled = "multifactor_auth_claim_info" in config["OPENID_CONNECT"].get(
+            idp, {}
+        )
+        if not is_mfa_enabled:
+            self.arborist_client.revoke_all_policies_for_user(username)
+            return
+        try:
             resources = self.arborist_client.list_resources_for_user(username)
+        finally:
             # TODO This should be a diff, not a revocation of all policies.
             self.arborist_client.revoke_all_policies_for_user(username)
-            has_revoked_policies = True
-            if "/multifactor_auth" in resources:
+
+        if "/multifactor_auth" in resources:
+            try:
                 self.arborist_client.grant_user_policy(username, "mfa_policy")
-        except Exception as e:
-            self.logger.error(f"Error attempting to preserve MFA policy. {e}")
-            if not has_revoked_policies:
-                self.logger.error(f"Revoking all policies for user {user.username}")
-                self.arborist_client.revoke_all_policies_for_user(username)
+            except Exception as e:
+                self.logger.error(f"Error attempting to preserve MFA policy. {e}")
 
     def _update_authz_in_arborist(
         self,

From a8946cb95c3474f11b300eaad26cbff062d8d185 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Mon, 7 Aug 2023 19:23:33 -0500
Subject: [PATCH 16/26] Documentation on how to use file level MFA enforcement

---
 .secrets.baseline                             | 11 +++-
 .../fence_multifactor_authentication_guide.md | 64 +++++++++++++++++++
 fence/config-default.yaml                     |  2 +-
 3 files changed, 75 insertions(+), 2 deletions(-)
 create mode 100644 docs/fence_multifactor_authentication_guide.md

diff --git a/.secrets.baseline b/.secrets.baseline
index 797bef715..52650d108 100644
--- a/.secrets.baseline
+++ b/.secrets.baseline
@@ -133,6 +133,15 @@
         "line_number": 7
       }
     ],
+    "docs/fence_multifactor_authentication_guide.md": [
+      {
+        "type": "Secret Keyword",
+        "filename": "docs/fence_multifactor_authentication_guide.md",
+        "hashed_secret": "0f674908b6342fcf2a9842d04699cb008d57d399",
+        "is_verified": false,
+        "line_number": 38
+      }
+    ],
     "fence/blueprints/storage_creds/google.py": [
       {
         "type": "Private Key",
@@ -377,5 +386,5 @@
       }
     ]
   },
-  "generated_at": "2023-07-26T23:47:35Z"
+  "generated_at": "2023-08-08T00:23:28Z"
 }
diff --git a/docs/fence_multifactor_authentication_guide.md b/docs/fence_multifactor_authentication_guide.md
new file mode 100644
index 000000000..581c909e0
--- /dev/null
+++ b/docs/fence_multifactor_authentication_guide.md
@@ -0,0 +1,64 @@
+# Fence Multifactor Authentication Guide
+
+Fence is capable of using token claims from IdPs to identify when multifactor authentication (MFA) was used during the authentication process.
+
+## File Level Enforcement
+To restrict access to files to user who've authenticated with MFA, the following resource *MUST* be present for indexd record:
+`/multifactor_auth`
+
+And the following configs must be updated:
+- fence-config.yaml
+- user.yaml
+
+### fence-config.yaml changes
+
+MFA claim checking is configured on a per-IdP basis. For a given IdP, define the name of the claim in the id_token and is possible values that indicate MFA. If the id_token claim value matches at least one value in the configured multifactor_auth_claim_info.values, then "/multifactor_auth" resource will be assigned to the user.
+
+For example, Okta may issue the following id_token when MFA is used:
+```
+{
+  "amr": ["otp", "pwd"],
+  "aud": "6joRGIzNCaJfdCPzRjlh",
+  "auth_time": 1311280970,
+  "exp": 1311280970,
+  "iat": 1311280970,
+  "idp": "00ok1u7AsAkrwdZL3z0g3",
+  "iss": "https://$"
+  "jti": "Tlenfse93dgkaksginv",
+  "sub": "00uk1u7AsAk6dZL3z0g3",
+  "ver": 1
+}
+```
+
+And fence-config.yaml is configured as follows:
+```
+OPENID_CONNECT:
+  okta:
+    client_id: 'redacted'
+    client_secret: 'redacted'
+    multifactor_auth_claim_info:
+      claim: 'amr'
+      values: [  "mfa", "otp", "sms" ]
+```
+
+Then fence will assign the "/multifactor_auth" resource to the user in Arborist.
+
+### user.yaml changes
+The `mfa_policy` policy and `multifactor_auth` resource must be added to user.yaml so the appropriate policy and resource are created in arborist when usersync runs.
+
+NOTE: The role_ids provided here are an example and should be changed to the appropriate arborist roles for the commons.
+
+Add the following to the `resources` section:
+```yaml
+  - name: multifactor_auth
+```
+
+Add the following the `policies` section:
+```yaml
+- id: mfa_policy
+  role_ids:
+   - read-storage
+   - read
+   resource_paths:
+   - /multifactor_auth
+```
diff --git a/fence/config-default.yaml b/fence/config-default.yaml
index 00e80ba71..a1cce4447 100755
--- a/fence/config-default.yaml
+++ b/fence/config-default.yaml
@@ -186,7 +186,7 @@ OPENID_CONNECT:
     scope: 'openid email profile ga4gh_passport_v1'
 #    multifactor_auth_claim_info:
 #      claim: 'acr'
-#      values: [ "https://sts.nih.gov/assurance/aal/2", "urn:gov:gsa:ac:classes:sp:PasswordProtectedTransport:duo" ]
+#      values: [ 'https://stsstg.nih.gov/assurance/aal/2', 'https://stsstg.nih.gov/assurance/ial/1' ]
     # if mock is true, will fake a successful login response for login
     # WARNING: DO NOT ENABLE IN PRODUCTION (for testing purposes only)
     mock: false

From e36f6574ade17bb8c9c0c9df8801f9a59de423b1 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Wed, 23 Aug 2023 13:16:25 -0500
Subject: [PATCH 17/26] Removing untested IdP changes, restricting to amr vs
 acr claims

---
 fence/config-default.yaml                  |  2 +-
 fence/config.py                            |  7 +++
 fence/resources/openid/cilogon_oauth2.py   |  2 +-
 fence/resources/openid/cognito_oauth2.py   |  6 +-
 fence/resources/openid/google_oauth2.py    |  6 +-
 fence/resources/openid/idp_oauth2.py       | 12 +++-
 fence/resources/openid/microsoft_oauth2.py |  6 +-
 fence/resources/openid/okta_oauth2.py      |  6 +-
 fence/resources/openid/orcid_oauth2.py     |  6 +-
 fence/sync/sync_users.py                   | 11 ++--
 tests/login/test_idp_oauth2.py             | 66 ++++++++++++++++++----
 11 files changed, 86 insertions(+), 44 deletions(-)

diff --git a/fence/config-default.yaml b/fence/config-default.yaml
index a1cce4447..3721cb088 100755
--- a/fence/config-default.yaml
+++ b/fence/config-default.yaml
@@ -186,7 +186,7 @@ OPENID_CONNECT:
     scope: 'openid email profile ga4gh_passport_v1'
 #    multifactor_auth_claim_info:
 #      claim: 'acr'
-#      values: [ 'https://stsstg.nih.gov/assurance/aal/2', 'https://stsstg.nih.gov/assurance/ial/1' ]
+#      values: [ 'https://stsstg.nih.gov/assurance/aal/2' ]
     # if mock is true, will fake a successful login response for login
     # WARNING: DO NOT ENABLE IN PRODUCTION (for testing purposes only)
     mock: false
diff --git a/fence/config.py b/fence/config.py
index c7455e935..0dfa0f703 100644
--- a/fence/config.py
+++ b/fence/config.py
@@ -143,6 +143,13 @@ def post_process(self):
                 "Visa parsing on login is enabled but `ENABLE_VISA_UPDATE_CRON` is disabled!"
             )
 
+        for idp in self._configs.get("OPENID_CONNECT", {}).values():
+            mfa_info = idp.get("multifactor_auth_claim_info")
+            if mfa_info and mfa_info["claim"] not in ["amr", "acr"]:
+                logger.warning(
+                    f"multifactor_auth_claim_info is using {mfa_info['claim']}, which is neither AMR or ACR. Unable to determine if a user used MFA. Fence will continue and assume they have not used MFA."
+                )
+
         self._validate_parent_child_studies(self._configs["dbGaP"])
 
     @staticmethod
diff --git a/fence/resources/openid/cilogon_oauth2.py b/fence/resources/openid/cilogon_oauth2.py
index 212f2d31f..163663420 100644
--- a/fence/resources/openid/cilogon_oauth2.py
+++ b/fence/resources/openid/cilogon_oauth2.py
@@ -42,7 +42,7 @@ def get_auth_info(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("sub"):
-                return {"sub": claims["sub"], "mfa": self.has_mfa_claim(claims)}
+                return {"sub": claims["sub"]}
             else:
                 return {"error": "Can't get user's CILogon sub"}
         except Exception as e:
diff --git a/fence/resources/openid/cognito_oauth2.py b/fence/resources/openid/cognito_oauth2.py
index 1b68592f6..73038c87f 100644
--- a/fence/resources/openid/cognito_oauth2.py
+++ b/fence/resources/openid/cognito_oauth2.py
@@ -53,11 +53,7 @@ def get_auth_info(self, code):
                 claims.get("email_verified")
                 or self.settings.get("assume_emails_verified")
             ):
-                return {
-                    "email": claims["email"],
-                    "sub": claims.get("sub"),
-                    "mfa": self.has_mfa_claim(claims),
-                }
+                return {"email": claims["email"], "sub": claims.get("sub")}
             elif claims.get("email"):
                 return {"error": "Email is not verified"}
             else:
diff --git a/fence/resources/openid/google_oauth2.py b/fence/resources/openid/google_oauth2.py
index d0fd4c2bc..b396fe9ca 100644
--- a/fence/resources/openid/google_oauth2.py
+++ b/fence/resources/openid/google_oauth2.py
@@ -50,11 +50,7 @@ def get_auth_info(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("email") and claims.get("email_verified"):
-                return {
-                    "email": claims["email"],
-                    "sub": claims.get("sub"),
-                    "mfa": self.has_mfa_claim(claims),
-                }
+                return {"email": claims["email"], "sub": claims.get("sub")}
             elif claims.get("email"):
                 return {"error": "Email is not verified"}
             else:
diff --git a/fence/resources/openid/idp_oauth2.py b/fence/resources/openid/idp_oauth2.py
index 00676663a..3c681b1e5 100644
--- a/fence/resources/openid/idp_oauth2.py
+++ b/fence/resources/openid/idp_oauth2.py
@@ -244,7 +244,17 @@ def has_mfa_claim(self, decoded_id_token):
                 f"config yaml."
             )
             return False
-        mfa_claims = decoded_id_token.get(claim_name, "").split(" ")
+        mfa_claims = []
+        if claim_name == "amr":
+            mfa_claims = decoded_id_token.get(claim_name, [])
+        elif claim_name == "acr":
+            mfa_claims = decoded_id_token.get(claim_name, "").split(" ")
+        else:
+            self.logger.error(
+                f"{claim_name} is neither AMR or ACR - cannot determine if MFA was used"
+            )
+            return False
+
         self.logger.info(
             f"Comparing token's {claim_name} claims: {mfa_claims} to mfa values {mfa_values}"
         )
diff --git a/fence/resources/openid/microsoft_oauth2.py b/fence/resources/openid/microsoft_oauth2.py
index da823d0d3..916a4a2b1 100755
--- a/fence/resources/openid/microsoft_oauth2.py
+++ b/fence/resources/openid/microsoft_oauth2.py
@@ -51,11 +51,7 @@ def get_auth_info(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("email"):
-                return {
-                    "email": claims["email"],
-                    "sub": claims.get("sub"),
-                    "mfa": self.has_mfa_claim(claims),
-                }
+                return {"email": claims["email"], "sub": claims.get("sub")}
             return {"error": "Can't get user's Microsoft email!"}
         except Exception as exception:
             self.logger.exception("Can't get user info")
diff --git a/fence/resources/openid/okta_oauth2.py b/fence/resources/openid/okta_oauth2.py
index 8e8abfba4..572031623 100644
--- a/fence/resources/openid/okta_oauth2.py
+++ b/fence/resources/openid/okta_oauth2.py
@@ -40,11 +40,7 @@ def get_auth_info(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("email"):
-                return {
-                    "email": claims["email"],
-                    "sub": claims.get("sub"),
-                    "mfa": self.has_mfa_claim(claims),
-                }
+                return {"email": claims["email"], "sub": claims.get("sub")}
             else:
                 return {"error": "Can't get user's email!"}
         except Exception as e:
diff --git a/fence/resources/openid/orcid_oauth2.py b/fence/resources/openid/orcid_oauth2.py
index 15caa7445..ee8711f33 100644
--- a/fence/resources/openid/orcid_oauth2.py
+++ b/fence/resources/openid/orcid_oauth2.py
@@ -44,11 +44,7 @@ def get_auth_info(self, code):
             claims = self.get_jwt_claims_identity(token_endpoint, jwks_endpoint, code)
 
             if claims.get("sub"):
-                return {
-                    "orcid": claims["sub"],
-                    "sub": claims["sub"],
-                    "mfa": self.has_mfa_claim(claims),
-                }
+                return {"orcid": claims["sub"], "sub": claims["sub"]}
             else:
                 return {"error": "Can't get user's orcid"}
         except Exception as e:
diff --git a/fence/sync/sync_users.py b/fence/sync/sync_users.py
index 7e938105a..4be2b3587 100644
--- a/fence/sync/sync_users.py
+++ b/fence/sync/sync_users.py
@@ -1882,17 +1882,20 @@ def _revoke_all_policies_preserve_mfa(self, user):
         if not is_mfa_enabled:
             self.arborist_client.revoke_all_policies_for_user(username)
             return
+
+        resources = []
         try:
             resources = self.arborist_client.list_resources_for_user(username)
+        except Exception as e:
+            self.logger.error(
+                f"Could not retrieve user's resources, revoking all policies anyway. {e}"
+            )
         finally:
             # TODO This should be a diff, not a revocation of all policies.
             self.arborist_client.revoke_all_policies_for_user(username)
 
         if "/multifactor_auth" in resources:
-            try:
-                self.arborist_client.grant_user_policy(username, "mfa_policy")
-            except Exception as e:
-                self.logger.error(f"Error attempting to preserve MFA policy. {e}")
+            status_code = self.arborist_client.grant_user_policy(username, "mfa_policy")
 
     def _update_authz_in_arborist(
         self,
diff --git a/tests/login/test_idp_oauth2.py b/tests/login/test_idp_oauth2.py
index 2bc8a3f55..40ae2349a 100644
--- a/tests/login/test_idp_oauth2.py
+++ b/tests/login/test_idp_oauth2.py
@@ -3,7 +3,7 @@
 
 from fence import Oauth2ClientBase
 
-MOCK_SETTINGS = {
+MOCK_SETTINGS_ACR = {
     "client_id": "client",
     "client_secret": "hunter2",
     "redirect_url": "localhost",
@@ -12,32 +12,74 @@
         "values": ["mfa", "otp", "duo", "sms", "phonecall"],
     },
 }
+MOCK_SETTINGS_AMR = {
+    "client_id": "client",
+    "client_secret": "hunter2",
+    "redirect_url": "localhost",
+    "multifactor_auth_claim_info": {
+        "claim": "amr",
+        "values": ["mfa", "otp", "duo", "sms", "phonecall"],
+    },
+}
 logger = get_logger(__name__, log_level="debug")
 
 
 @pytest.fixture()
-def oauth_client():
-    return Oauth2ClientBase(settings=MOCK_SETTINGS, idp="mock", logger=logger)
+def oauth_client_acr():
+    return Oauth2ClientBase(settings=MOCK_SETTINGS_ACR, idp="mock", logger=logger)
+
+
+@pytest.fixture()
+def oauth_client_amr():
+    return Oauth2ClientBase(settings=MOCK_SETTINGS_AMR, idp="mock", logger=logger)
+
+
+def test_has_mfa_claim_acr(oauth_client_acr):
+    has_mfa = oauth_client_acr.has_mfa_claim({"acr": "mfa"})
+    assert has_mfa
+
+
+def test_has_mfa_claim_acr(oauth_client_acr):
+    has_mfa = oauth_client_acr.has_mfa_claim({"acr": "mfa"})
+    assert has_mfa
+
+
+def test_has_mfa_claim_multiple_acr(oauth_client_acr):
+    has_mfa = oauth_client_acr.has_mfa_claim({"acr": "mfa otp duo"})
+    assert has_mfa
+
+
+def test_does_not_has_mfa_claim(oauth_client_acr):
+    has_mfa = oauth_client_acr.has_mfa_claim({"acr": "pwd"})
+    assert not has_mfa
+
+    has_mfa = oauth_client_acr.has_mfa_claim({"something": "mfa"})
+    assert not has_mfa
+
+
+def test_does_not_has_mfa_claim_multiple(oauth_client_acr):
+    has_mfa = oauth_client_acr.has_mfa_claim({"acr": "pwd trustme"})
+    assert not has_mfa
 
 
-def test_has_mfa_claim(oauth_client):
-    has_mfa = oauth_client.has_mfa_claim({"acr": "mfa"})
+def test_has_mfa_claim_amr(oauth_client_amr):
+    has_mfa = oauth_client_amr.has_mfa_claim({"amr": ["mfa"]})
     assert has_mfa
 
 
-def test_has_mfa_claim_multiple_acr(oauth_client):
-    has_mfa = oauth_client.has_mfa_claim({"acr": "mfa otp duo"})
+def test_has_mfa_claim_multiple_amr(oauth_client_amr):
+    has_mfa = oauth_client_amr.has_mfa_claim({"amr": ["mfa", "otp", "duo"]})
     assert has_mfa
 
 
-def test_does_not_has_mfa_claim(oauth_client):
-    has_mfa = oauth_client.has_mfa_claim({"acr": "pwd"})
+def test_does_not_has_mfa_claim_amr(oauth_client_amr):
+    has_mfa = oauth_client_amr.has_mfa_claim({"amr": ["pwd"]})
     assert not has_mfa
 
-    has_mfa = oauth_client.has_mfa_claim({"something": "mfa"})
+    has_mfa = oauth_client_amr.has_mfa_claim({"something": ["mfa"]})
     assert not has_mfa
 
 
-def test_does_not_has_mfa_claim_multiple(oauth_client):
-    has_mfa = oauth_client.has_mfa_claim({"acr": "pwd trustme"})
+def test_does_not_has_mfa_claim_multiple_amr(oauth_client_amr):
+    has_mfa = oauth_client_amr.has_mfa_claim({"amr": ["pwd, trustme"]})
     assert not has_mfa

From cd10136978a8f1174c6c3c22bdae52d1205c5594 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Wed, 23 Aug 2023 13:40:27 -0500
Subject: [PATCH 18/26] Clarifying claims containing MFA info in config-default

---
 fence/config-default.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/fence/config-default.yaml b/fence/config-default.yaml
index 3721cb088..279c048fb 100755
--- a/fence/config-default.yaml
+++ b/fence/config-default.yaml
@@ -112,7 +112,7 @@ OPENID_CONNECT:
     email_field: ''  # optional (default "email"); claims field to get the user email from
     scope: ''  # optional (default "openid")
     multifactor_auth_claim_info: # optional, include if you're using arborist to enforce mfa on a per-file level
-      claim: '' # claims field that indicates mfa, usually the acr or acm claim.
+      claim: '' # claims field that indicates mfa, either the acr or acm claim.
       values: [ "" ] # possible values that indicate mfa was used. At least one value configured here is required to be in the token
   # These Google values must be obtained from Google's Cloud Console
   # Follow: https://developers.google.com/identity/protocols/OpenIDConnect

From d50883ec83543bf847e6707e6c30f4971e7bdd6a Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Wed, 23 Aug 2023 14:53:00 -0500
Subject: [PATCH 19/26] Updating travis to jammy for urllib3

---
 .travis.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.travis.yml b/.travis.yml
index 239ea50bb..384021d57 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -1,5 +1,5 @@
 language: python
-
+dist: jammy
 python:
   - "3.9"
 

From 79e260e10a52b6a3a18e6dab65f15d5a1003dd6f Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Thu, 24 Aug 2023 17:02:16 -0500
Subject: [PATCH 20/26] Usersync checks for mfa_policy over multifactor_auth
 resource

---
 fence/sync/sync_users.py           | 9 +++++----
 tests/dbgap_sync/test_user_sync.py | 2 +-
 2 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/fence/sync/sync_users.py b/fence/sync/sync_users.py
index 4be2b3587..37d535832 100644
--- a/fence/sync/sync_users.py
+++ b/fence/sync/sync_users.py
@@ -1880,21 +1880,22 @@ def _revoke_all_policies_preserve_mfa(self, user):
             idp, {}
         )
         if not is_mfa_enabled:
+            # TODO This should be a diff, not a revocation of all policies.
             self.arborist_client.revoke_all_policies_for_user(username)
             return
 
-        resources = []
+        policies = []
         try:
-            resources = self.arborist_client.list_resources_for_user(username)
+            policies = self.arborist_client.get_user()["policies"]
         except Exception as e:
             self.logger.error(
-                f"Could not retrieve user's resources, revoking all policies anyway. {e}"
+                f"Could not retrieve user's policies, revoking all policies anyway. {e}"
             )
         finally:
             # TODO This should be a diff, not a revocation of all policies.
             self.arborist_client.revoke_all_policies_for_user(username)
 
-        if "/multifactor_auth" in resources:
+        if "mfa_policy" in policies:
             status_code = self.arborist_client.grant_user_policy(username, "mfa_policy")
 
     def _update_authz_in_arborist(
diff --git a/tests/dbgap_sync/test_user_sync.py b/tests/dbgap_sync/test_user_sync.py
index 6300dfc2c..579f1b416 100644
--- a/tests/dbgap_sync/test_user_sync.py
+++ b/tests/dbgap_sync/test_user_sync.py
@@ -1050,7 +1050,7 @@ def test_revoke_all_policies_preserve_mfa(monkeypatch, db_session, syncer):
     user = User(
         username="mockuser", identity_provider=IdentityProvider(name="mock_idp")
     )
-    syncer.arborist_client.list_resources_for_user.return_value = ["/multifactor_auth"]
+    syncer.arborist_client.get_user.return_value = {"policies": ["mfa_policy"]}
     syncer._revoke_all_policies_preserve_mfa(user)
     syncer.arborist_client.revoke_all_policies_for_user.assert_called_with(
         user.username

From 251a3957e85f93d284392ff6889b98ba936c8c8b Mon Sep 17 00:00:00 2001
From: burtonk <117617405+k-burt-uch@users.noreply.github.com>
Date: Thu, 24 Aug 2023 17:03:15 -0500
Subject: [PATCH 21/26] Update fence/config.py

Co-authored-by: Pauline Ribeyre <4224001+paulineribeyre@users.noreply.github.com>
---
 fence/config.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/fence/config.py b/fence/config.py
index 0dfa0f703..b4deeeb22 100644
--- a/fence/config.py
+++ b/fence/config.py
@@ -143,11 +143,11 @@ def post_process(self):
                 "Visa parsing on login is enabled but `ENABLE_VISA_UPDATE_CRON` is disabled!"
             )
 
-        for idp in self._configs.get("OPENID_CONNECT", {}).values():
+        for idp_id, idp in self._configs.get("OPENID_CONNECT", {}).items():
             mfa_info = idp.get("multifactor_auth_claim_info")
             if mfa_info and mfa_info["claim"] not in ["amr", "acr"]:
                 logger.warning(
-                    f"multifactor_auth_claim_info is using {mfa_info['claim']}, which is neither AMR or ACR. Unable to determine if a user used MFA. Fence will continue and assume they have not used MFA."
+                    f"IdP '{idp_id}' is using multifactor_auth_claim_info '{mfa_info['claim']}', which is neither AMR or ACR. Unable to determine if a user used MFA. Fence will continue and assume they have not used MFA."
                 )
 
         self._validate_parent_child_studies(self._configs["dbGaP"])

From 24ecdf41f3ba91e1c68adca03654c42c3521a9b7 Mon Sep 17 00:00:00 2001
From: burtonk <117617405+k-burt-uch@users.noreply.github.com>
Date: Thu, 24 Aug 2023 17:03:35 -0500
Subject: [PATCH 22/26] Update docs/fence_multifactor_authentication_guide.md

Co-authored-by: Pauline Ribeyre <4224001+paulineribeyre@users.noreply.github.com>
---
 docs/fence_multifactor_authentication_guide.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/fence_multifactor_authentication_guide.md b/docs/fence_multifactor_authentication_guide.md
index 581c909e0..f0f8cea24 100644
--- a/docs/fence_multifactor_authentication_guide.md
+++ b/docs/fence_multifactor_authentication_guide.md
@@ -3,7 +3,7 @@
 Fence is capable of using token claims from IdPs to identify when multifactor authentication (MFA) was used during the authentication process.
 
 ## File Level Enforcement
-To restrict access to files to user who've authenticated with MFA, the following resource *MUST* be present for indexd record:
+To restrict access to files to user who've authenticated with MFA, the following resource *MUST* be present in the indexd record's `authz`:
 `/multifactor_auth`
 
 And the following configs must be updated:

From 0d0896570f6b42a35a4d884bf3214fb89c8d44b3 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Thu, 24 Aug 2023 17:20:23 -0500
Subject: [PATCH 23/26] Updating travis postgres service

---
 .travis.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 384021d57..29ce926dd 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -7,8 +7,8 @@ sudo: false
 
 cache: pip
 
-addons:
-  postgresql: "9.6"
+services:
+    - postgresql
 
 install:
   - pip install --upgrade pip

From 3842fb27978126b7211f33e2cf54dd1232fda531 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Fri, 25 Aug 2023 10:07:02 -0500
Subject: [PATCH 24/26] Travis postgresql to 13

---
 .travis.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.travis.yml b/.travis.yml
index 29ce926dd..ab45551cd 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -10,6 +10,11 @@ cache: pip
 services:
     - postgresql
 
+addons:
+  postgresql: "13"
+  apt:
+      packages:
+        - postgresql-13
 install:
   - pip install --upgrade pip
   - pip install poetry

From cb60cf32188ad29f06e0c44837e260fbda2b5bf5 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Fri, 25 Aug 2023 10:42:15 -0500
Subject: [PATCH 25/26] Adding sources for postgresql-13 jammy

---
 .travis.yml | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index ab45551cd..1239122a8 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -13,8 +13,12 @@ services:
 addons:
   postgresql: "13"
   apt:
-      packages:
-        - postgresql-13
+    sources:
+      - sourceline: deb http://apt.postgresql.org/pub/repos/apt/ jammy-pgdg main
+          13
+        key_url: https://www.postgresql.org/media/keys/ACCC4CF8.asc
+    packages:
+      - postgresql-13
 install:
   - pip install --upgrade pip
   - pip install poetry

From 8c0513cd3ee96104039961fd6da0fbe635d1a128 Mon Sep 17 00:00:00 2001
From: Kyle Burton <burtonk@uchicago.edu>
Date: Fri, 25 Aug 2023 10:54:13 -0500
Subject: [PATCH 26/26] Adding configuration for travis postgresql 13

---
 .travis.yml            |  9 +++++++++
 travis/pg_hba.conf     | 10 ++++++++++
 travis/postgresql.conf | 32 ++++++++++++++++++++++++++++++++
 3 files changed, 51 insertions(+)
 create mode 100644 travis/pg_hba.conf
 create mode 100644 travis/postgresql.conf

diff --git a/.travis.yml b/.travis.yml
index 1239122a8..9dfb763ba 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -19,6 +19,15 @@ addons:
         key_url: https://www.postgresql.org/media/keys/ACCC4CF8.asc
     packages:
       - postgresql-13
+
+before_install:
+  # Copy custom configs from the repo because PG-13 isn't set up to run like
+  # it normally does on Travis out of the box.
+  # Source: https://github.com/NCI-GDC/psqlgraph/blob/94f315db2c039217752cba85d9c63988f2059317/.travis.yml
+  - sudo cp travis/postgresql.conf /etc/postgresql/13/main/postgresql.conf
+  - sudo cp travis/pg_hba.conf /etc/postgresql/13/main/pg_hba.conf
+  - sudo pg_ctlcluster 13 main restart
+
 install:
   - pip install --upgrade pip
   - pip install poetry
diff --git a/travis/pg_hba.conf b/travis/pg_hba.conf
new file mode 100644
index 000000000..e080219fd
--- /dev/null
+++ b/travis/pg_hba.conf
@@ -0,0 +1,10 @@
+# This config file will be used for the Travis test run.
+#
+# The new PostgreSQL 13 changes some settings from what they originally were
+# in Travis, so we'll set them back. In particular we want to enable
+# passwordless authentication for connections to PostgreSQL.
+# Source: https://github.com/NCI-GDC/psqlgraph/blob/94f315db2c039217752cba85d9c63988f2059317/travis/pg_hba.conf
+local   all             postgres                                trust
+local   all             all                                     trust
+host    all             all             127.0.0.1/32            trust
+host    all             all             ::1/128                 trust
diff --git a/travis/postgresql.conf b/travis/postgresql.conf
new file mode 100644
index 000000000..d3959e564
--- /dev/null
+++ b/travis/postgresql.conf
@@ -0,0 +1,32 @@
+# This config file will be used for PostgreSQL 13 because Travis doesn't
+# have configurations set up for it yet. The most important part will be the
+# ramfs storage location change. It also defaults to port 5433 so we need to
+# change that back, too.
+# Copied from https://github.com/NCI-GDC/psqlgraph/blob/94f315db2c039217752cba85d9c63988f2059317/travis/postgresql.conf
+data_directory = '/var/ramfs/postgresql/13/main'
+hba_file = '/etc/postgresql/13/main/pg_hba.conf'
+ident_file = '/etc/postgresql/13/main/pg_ident.conf'
+external_pid_file = '/var/run/postgresql/13-main.pid'
+port = 5432
+max_connections = 255
+unix_socket_directories = '/var/run/postgresql'
+ssl = on
+ssl_cert_file = '/etc/ssl/certs/ssl-cert-snakeoil.pem'
+ssl_key_file = '/etc/ssl/private/ssl-cert-snakeoil.key'
+shared_buffers = 128MB
+dynamic_shared_memory_type = posix
+max_wal_size = 256MB
+min_wal_size = 80MB
+log_line_prefix = '%t '
+log_timezone = 'UTC'
+cluster_name = '13/main'
+stats_temp_directory = '/var/run/postgresql/13-main.pg_stat_tmp'
+datestyle = 'iso, mdy'
+timezone = 'UTC'
+lc_messages = 'en_US.UTF-8'
+lc_monetary = 'en_US.UTF-8'
+lc_numeric = 'en_US.UTF-8'
+lc_time = 'en_US.UTF-8'
+default_text_search_config = 'pg_catalog.english'
+include_dir = 'conf.d'
+fsync = false