updates

Author: cgmeyer

gdcdictionary/schemas/condition.yaml

@@ -41,6 +41,31 @@ properties:
 
   $ref: "_definitions.yaml#/ubiquitous_properties"
 
+
+  long_covid_diagnosis: # MIDRC prop
+    description: "An indicator of whether the patient has ever been diagnosed with one of the following ICD-10 long COVID-19 conditions: U09.9 (Post COVID-19 condition, unspecified), G93.32 (Myalgic encephalomyelitis/chronic fatigue syndrome), and B94.8 (Sequelae of other specified infectious and parasitic diseases).  'Positive' means the patient was diagnosed with a long COVID condition, while 'Not Reported' means the patient has never been diagnosed with a long COVID condition."
+    enum:
+      - Positive
+      - Not Reported
+
+  covid19_positive: # MIDRC prop
+    description: "An indicator of whether the patient has ever had a positive COVID-19 test or been diagnosed with one of the following ICD-10 COVID-19 conditions: COVID-19 (U07. 1), Influenza due to unidentified influenza virus with other manifestations (J11.8), Post COVID-19 condition (U09.9), Myalgic encephalomyelitis/chronic fatigue syndrome (G93.32), or Sequelae of other specified infectious and parasitic diseases (B94.8). For more information about a patient's specific COVID-19 diagnosis, details can be found under Condition."
+    enum:
+      - "Yes"
+      - "No"
+      - "Indeterminate"
+      - "Not Reported"
+
+  icu_indicator: # MIDRC prop
+    description: Indicates whether the subject has been admitted to the ICU.
+    type: boolean
+
+  ventilator_indicator: # MIDRC prop
+    description: Indicates whether the subject has been on a ventilator.
+    type: boolean
+
+
+
   condition_code:
       description: The code for a specific codition, assigned by the code system.
       type: string

gdcdictionary/schemas/death.yaml

@@ -63,12 +63,6 @@ properties:
     description: A URL where the imaging series can be viewed.
     type: string
 
-  object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the imaging series, if applicable.
-    type: array
-    items:
-      type: string
-
   Manufacturer:
     description: (0008, 0070) Manufacturer
     type: string
@@ -81,6 +75,12 @@ properties:
     description: (0008, 0060) Modality
     type: string
 
+  object_ids:
+    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the imaging series, if applicable.
+    type: array
+    items:
+      type: string
+
   SeriesDescription:
     description: (0008, 103e) Series Description
     type: string

gdcdictionary/schemas/imaging_series.yaml

@@ -47,29 +47,43 @@ properties:
 
   $ref: "_definitions.yaml#/ubiquitous_properties"
 
+## Non-DICOM properties
+  disease_type:
+    description: The primary type of disease studied in this imaging study, if applicable.
+    type: string
+
+  primary_site:
+    description: The primary body site studied in this imaging study.
+    type: string
+
+## DICOM properties
   BodyPartExamined:
     description: (0018, 0015) Body Part Examined.
     type: array
     items:
       type: string
 
-  disease_type:
-    description: The primary type of disease studied in this imaging study, if applicable.
-    type: string
+  # EthnicGroup: # use subject.ethnicity
+  #   description: (0010,2160) The ethnic group to which the patient belongs.
+  #   type: string
 
-  Modality:
-    description: The modalities of the imaging study; derived from (0008, 0060) Modality.
+  study_modality:
+    description: The list of modalities in the imaging study; derived from (0008, 0060) Modality.
     type: array
     items:
       type: string
 
   PatientAge:
     description: (0010,1010) The patient's age at the time of the imaging study.
     type: number
-  
-  primary_site:
-    description: The primary body site studied in this imaging study.
-    type: string
+
+  # PatientID: # use subject.submitter_id
+  #   description: (0010,0020) A unique identifier for the patient.
+  #   type: string
+
+  # PatientSex: # use subject.gender
+  #   description: (0010,0040) the patient's sex; the biologic character or quality that distinguishes male and female from one another as expressed by analysis of the person's gonadal, morphologic  (internal and external), chromosomal, and hormonal characteristics 
+  #   type: string
 
   StudyDescription:
     description: (0008, 1030) Study Description.

gdcdictionary/schemas/imaging_study.yaml

@@ -40,6 +40,9 @@ properties:
 
   $ref: "_definitions.yaml#/ubiquitous_properties"
 
+
+
+
   days_to_observation:
     description: The number of days from the index_date to the date of the observation.
     type: integer