diff --git a/config/bih/explorer.json b/config/bih/explorer.json index a81e0da..5a4ff37 100644 --- a/config/bih/explorer.json +++ b/config/bih/explorer.json @@ -1,4 +1,358 @@ [ + { + "tabTitle": "Subject", + "charts": { + "commons_name": { + "chartType": "fullPie", + "title": "Platform" + }, + "primary_site": { + "chartType": "fullPie", + "title": "primary_site" + } + }, + "filters": { + "tabs": [ + { + "title": "Subject Selection", + "fields": [ + "race", + "primary_site", + "license", + "disease_type", + "commons_name", + "project_id" + ] + } + ] + }, + "table": { + "enabled": true, + "pageLimit": { + "limit": 10000, + "label": "Maximum of 10,000 Total Records. Records per Page:" + }, + "fields": [ + "data_url_doi", + "StudyInstanceUID", + "StudyDescription", + "BodyPartExamined", + "primary_site", + "disease_type", + "commons_name", + "collection_id", + "license", + "data_url_doi", + "SeriesInstanceUID", + "SeriesDescription" + ], + "columns": { + "StudyInstanceUID": { + "title": "Study ID" + }, + "primary_site": { + "title": "Primary Site" + }, + "race": { + "title": "Race" + }, + "commons_name": { + "title": "Platform", + "type": "link", + "cellRenderFunction": "linkWithValueMap", + "params": { + "valueToURL": { + "ACRdart": "https://dart.acr.org/Home/ImagingHub", + "IDC": "https://portal.imaging.datacommons.cancer.gov/explore/", + "MIDRC": "https://data.midrc.org", + "Stanford AIMI": "https://stanfordaimi.azurewebsites.net/", + "TCIA": "https://www.cancerimagingarchive.net/" + } + } + }, + "collection_id": { + "title": "Collection" + }, + "license": { + "title": "License", + "type": "link", + "cellRenderFunction": "linkURL", + "sortable": false, + "params": { + "href": "" + } + }, + "data_url_doi": { + "title": "DOI", + "type": "link", + "cellRenderFunction": "linkURL", + "sortable": false + } + } + }, + "guppyConfig": { + "dataType": "imaging_series", + "nodeCountTitle": "Imaging Series", + "fieldMapping": [ + { + "field": "StudyInstanceUID", + "name": "Study ID" + }, + { + "field": "SeriesDescription", + "name": "Series Description" + }, + { + "field": "BodyPartExamined", + "name": "Body Part Examined" + }, + { + "field": "PatientSex", + "name": "Gender" + }, + { + "field": "primary_site", + "name": "Primary Site" + }, + { + "field": "disease_type", + "name": "Disease Type" + }, + { + "field": "commons_name", + "name": "Platform" + }, + { + "field": "collection_id", + "name": "Collection ID" + }, + { + "field": "license", + "name": "License" + }, + { + "field": "data_url_doi", + "name": "DOI" + } + ], + "manifestMapping": { + "resourceIndexType": "imaging_series", + "resourceIdField": "StudyInstanceUID", + "referenceIdFieldInResourceIndex": "StudyInstanceUID", + "referenceIdFieldInDataIndex": "StudyInstanceUID" + }, + "accessibleFieldCheckList": ["authz"], + "accessibleValidationField": "auth_resource_path" + }, + "loginForDownload": false, + "dropdowns": { + "download-menu": { + "enabled": true, + "title": "Download Table", + "leftIcon": "gen3:download", + "rightIcon": "gen3:chevron-down", + "dropdownItems": [ + { + "enabled": true, + "type": "data-json", + "title": "JSON", + "leftIcon": "datafile", + "rightIcon": "download", + "action": "data-json", + "actionArgs": { + "filename": "BIH_Series_table.json" + } + }, + { + "enabled": true, + "type": "data-csv", + "title": "CSV", + "leftIcon": "datafile", + "rightIcon": "download", + "action": "data-csv", + "actionArgs": { + "filename": "BIH_Series_table.csv" + } + } + ] + } + }, + "buttons": [] + }, + { + "tabTitle": "Studies", + "charts": { + "commons_name": { + "chartType": "fullPie", + "title": "Platform" + } + }, + "filters": { + "tabs": [ + { + "title": "Study Selection", + "fields": [ + "PatientSex", + "PatientAge", + "EthnicGroup", + "primary_site", + "license", + "commons_name", + "project_id" + ] + } + ] + }, + "table": { + "enabled": true, + "pageLimit": { + "limit": 10000, + "label": "Maximum of 10,000 Total Records. Records per Page:" + }, + "fields": [ + "data_url_doi", + "StudyInstanceUID", + "StudyDescription", + "BodyPartExamined", + "primary_site", + "disease_type", + "commons_name", + "collection_id", + "license", + "data_url_doi", + "SeriesInstanceUID", + "SeriesDescription" + ], + "columns": { + "StudyInstanceUID": { + "title": "Study ID" + }, + "primary_site": { + "title": "Primary Site" + }, + "race": { + "title": "Race" + }, + "commons_name": { + "title": "Platform", + "type": "link", + "cellRenderFunction": "linkWithValueMap", + "params": { + "valueToURL": { + "ACRdart": "https://dart.acr.org/Home/ImagingHub", + "IDC": "https://portal.imaging.datacommons.cancer.gov/explore/", + "MIDRC": "https://data.midrc.org", + "Stanford AIMI": "https://stanfordaimi.azurewebsites.net/", + "TCIA": "https://www.cancerimagingarchive.net/" + } + } + }, + "collection_id": { + "title": "Collection" + }, + "license": { + "title": "License", + "type": "link", + "cellRenderFunction": "linkURL", + "sortable": false + }, + "data_url_doi": { + "title": "DOI", + "type": "link", + "cellRenderFunction": "linkURL", + "sortable": false + } + } + }, + "guppyConfig": { + "dataType": "imaging_series", + "nodeCountTitle": "Imaging Series", + "fieldMapping": [ + { + "field": "StudyInstanceUID", + "name": "Study ID" + }, + { + "field": "SeriesDescription", + "name": "Series Description" + }, + { + "field": "BodyPartExamined", + "name": "Body Part Examined" + }, + { + "field": "PatientSex", + "name": "Gender" + }, + { + "field": "primary_site", + "name": "Primary Site" + }, + { + "field": "disease_type", + "name": "Disease Type" + }, + { + "field": "commons_name", + "name": "Platform" + }, + { + "field": "collection_id", + "name": "Collection ID" + }, + { + "field": "license", + "name": "License" + }, + { + "field": "data_url_doi", + "name": "DOI" + } + ], + "manifestMapping": { + "resourceIndexType": "imaging_series", + "resourceIdField": "StudyInstanceUID", + "referenceIdFieldInResourceIndex": "StudyInstanceUID", + "referenceIdFieldInDataIndex": "StudyInstanceUID" + }, + "accessibleFieldCheckList": ["authz"], + "accessibleValidationField": "auth_resource_path" + }, + "loginForDownload": false, + "dropdowns": { + "download-menu": { + "enabled": true, + "title": "Download Table", + "leftIcon": "gen3:download", + "rightIcon": "gen3:chevron-down", + "dropdownItems": [ + { + "enabled": true, + "type": "data-json", + "title": "JSON", + "leftIcon": "datafile", + "rightIcon": "download", + "action": "data-json", + "actionArgs": { + "filename": "BIH_Series_table.json" + } + }, + { + "enabled": true, + "type": "data-csv", + "title": "CSV", + "leftIcon": "datafile", + "rightIcon": "download", + "action": "data-csv", + "actionArgs": { + "filename": "BIH_Series_table.csv" + } + } + ] + } + }, + "buttons": [] + }, { "tabTitle": "Series", "charts": { @@ -25,7 +379,8 @@ "BodyPartExamined", "primary_site", "disease_type", - "commons_name" + "commons_name", + "project_id" ] } ]