diff --git a/src/coptr/__init__.py b/src/coptr/__init__.py index a82b376..72f26f5 100644 --- a/src/coptr/__init__.py +++ b/src/coptr/__init__.py @@ -1 +1 @@ -__version__ = "1.1.1" +__version__ = "1.1.2" diff --git a/src/coptr/read_assigner.py b/src/coptr/read_assigner.py index 3a3d58c..dd2e41a 100644 --- a/src/coptr/read_assigner.py +++ b/src/coptr/read_assigner.py @@ -114,7 +114,7 @@ def run_vi(self, tol=1e-3): logger.debug("Iteration: %d; elbo: %.3G", it, elbo) - def assign_reads(self, verbose=False): + def assign_reads(self): """Compute read assignments. Return @@ -123,7 +123,7 @@ def assign_reads(self, verbose=False): A 1D array. Each entry gives a genome id that is the genome assignment for each read. """ - self.run_vi(verbose=verbose) + self.run_vi() self.phi = csr_matrix(self.phi) assignments = [] for i in range(self.nreads):