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你好,关于docker容器传参数的设置 #87

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honghh2018 opened this issue May 26, 2021 · 0 comments
Open

你好,关于docker容器传参数的设置 #87

honghh2018 opened this issue May 26, 2021 · 0 comments

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@honghh2018
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你好,谢谢提供一个gitlab的代码管理容器。
最近我想设置一个数据分析的容器,使用Dockerfile进行,想设置一个数据输入输出参数接口,如下面这种形式:
docker run -it --rm
-v /path/to/data:/scenicdata
aertslab/pyscenic:[version] pyscenic ctx
/scenicdata/expr_mat.adjacencies.tsv
/scenicdata/hg19-tss-centered-5kb-7species.mc9nr.feather
/scenicdata/hg19-tss-centered-10kb-7species.mc9nr.feather
--annotations_fname /scenicdata/motifs-v9-nr.hgnc-m0.001-o0.0.tbl
--expression_mtx_fname /scenicdata/expr_mat.tsv
--mode "dask_multiprocessing"
--output /scenicdata/regulons.csv
--num_workers 6

如:--annotations_fname这种参数在dockerfile中如何书写呢?
CMD ["pyscenic","annotations_fname"] 这样吗?

祝好,
Honghanhui

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