diff --git a/DESCRIPTION b/DESCRIPTION index af92352..96d5901 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: taxonlookup Title: A dynamically-updating versioned taxonomic resource for vascular plants -Version: 1.1.1 +Version: 1.1.2 Date: 2016-01-29 Description: This is a taxon lookup table for land plants. It is built from a set of scripts that dynamically build a versioned genus-family-order-higher taxa diff --git a/R/sysdata.rda b/R/sysdata.rda index d082bc3..95895d6 100644 Binary files a/R/sysdata.rda and b/R/sysdata.rda differ diff --git a/plant_lookup.csv b/plant_lookup.csv index 09fe9c9..8d076c2 100644 --- a/plant_lookup.csv +++ b/plant_lookup.csv @@ -8830,7 +8830,6 @@ number.of.accepted.species,number.of.accepted.and.unresolved.species,genus,famil 34,60,Alysicarpus,Leguminosae,Fabaceae,Fabales,Angiosperms 0,10,Amarenus,Leguminosae,Fabaceae,Fabales,Angiosperms 1,2,Amblygonocarpus,Leguminosae,Fabaceae,Fabales,Angiosperms -4,4,Amblytropis,Leguminosae,Fabaceae,Fabales,Angiosperms 2,2,Amburana,Leguminosae,Fabaceae,Fabales,Angiosperms 33,58,Amerimnon,Leguminosae,Fabaceae,Fabales,Angiosperms 1,1,Amherstia,Leguminosae,Fabaceae,Fabales,Angiosperms @@ -11856,7 +11855,6 @@ number.of.accepted.species,number.of.accepted.and.unresolved.species,genus,famil 1,1,Petenaea,Petenaeaceae,Petenaeaceae,Huerteales,Angiosperms 4,4,Huertea,Tapisciaceae,Tapisciaceae,Huerteales,Angiosperms 2,2,Tapiscia,Tapisciaceae,Tapisciaceae,Huerteales,Angiosperms -18,28,Adelanthus,Icacinaceae,Icacinaceae,Icacinales,Angiosperms 8,10,Alsodeiopsis,Icacinaceae,Icacinaceae,Icacinales,Angiosperms 8,8,Apodytes,Icacinaceae,Icacinaceae,Icacinales,Angiosperms 5,5,Calatola,Icacinaceae,Icacinaceae,Icacinales,Angiosperms @@ -12290,7 +12288,6 @@ number.of.accepted.species,number.of.accepted.and.unresolved.species,genus,famil 1,5,Synnema,Acanthaceae,Acanthaceae,Lamiales,Angiosperms 0,1,Syringidium,Acanthaceae,Acanthaceae,Lamiales,Angiosperms 1,1,Taeniandra,Acanthaceae,Acanthaceae,Lamiales,Angiosperms -0,1,Talbotia,Acanthaceae,Acanthaceae,Lamiales,Angiosperms 3,7,Teliostachya,Acanthaceae,Acanthaceae,Lamiales,Angiosperms 1,1,Tessmanniacanthus,Acanthaceae,Acanthaceae,Lamiales,Angiosperms 1,7,Tetraglochidium,Acanthaceae,Acanthaceae,Lamiales,Angiosperms @@ -20520,7 +20517,6 @@ number.of.accepted.species,number.of.accepted.and.unresolved.species,genus,famil 5,6,Porlieria,Zygophyllaceae,Zygophyllaceae,Zygophyllales,Angiosperms 1,59,Roepera,Zygophyllaceae,Zygophyllaceae,Zygophyllales,Angiosperms 1,2,Sarcozygium,Zygophyllaceae,Zygophyllaceae,Zygophyllales,Angiosperms -1,2,Schroeterella,Zygophyllaceae,Zygophyllaceae,Zygophyllales,Angiosperms 1,2,Seetzenia,Zygophyllaceae,Zygophyllaceae,Zygophyllales,Angiosperms 1,1,Sericodes,Zygophyllaceae,Zygophyllaceae,Zygophyllales,Angiosperms 1,1,Sisyndite,Zygophyllaceae,Zygophyllaceae,Zygophyllales,Angiosperms @@ -20864,6 +20860,7 @@ number.of.accepted.species,number.of.accepted.and.unresolved.species,genus,famil 1,1,Cyrtopus,Cyrtopodaceae,Cyrtopodaceae,Undeter_peristomate_moss,Bryophytes 8,8,Actinodontium,Daltoniaceae,Daltoniaceae,Undeter_peristomate_moss,Bryophytes 1,1,Adelothecium,Daltoniaceae,Daltoniaceae,Undeter_peristomate_moss,Bryophytes +4,4,Amblytropis,Daltoniaceae,Daltoniaceae,Undeter_peristomate_moss,Bryophytes 1,1,Benitotania,Daltoniaceae,Daltoniaceae,Undeter_peristomate_moss,Bryophytes 17,17,Callicosta,Daltoniaceae,Daltoniaceae,Undeter_peristomate_moss,Bryophytes 32,32,Calyptrochaeta,Daltoniaceae,Daltoniaceae,Undeter_peristomate_moss,Bryophytes diff --git a/source_data/badGeneraFamilyPairs.csv b/source_data/badGeneraFamilyPairs.csv index 19d358d..9c3a989 100644 --- a/source_data/badGeneraFamilyPairs.csv +++ b/source_data/badGeneraFamilyPairs.csv @@ -1 +1 @@ -genus,family Asteriscium,Compositae Benthamia,Boraginaceae Brodiaea,Amaryllidaceae Bridgesia,Cactaceae Brodiaea,Amaryllidaceae Bulbostylis,Compositae Heeria,Melastomataceae Holboellia,Berberidaceae Humboldtia,Orchidaceae Isoloma,Lindsaeaceae Laxmannia,Compositae Lepidostemon,Convolvulaceae Myrmecophila,Polypodiaceae Oreocallis,Ericaceae Parsonsia,Lythraceae Pseudogaltonia,Liliaceae Schmidtia,Compositae Swartzia,Solanaceae Thomandersia,Schlegeliaceae Washingtonia,Apiaceae Malacocarpus,Cactaceae Limnobium,Amblystegiaceae Pleuridium,Archidiaceae Grimaldia,Aytoniaceae Burnettia,Brachytheciaceae Pancovia,Brachytheciaceae Lamprophyllum,Bryaceae Zieria,Bryaceae Amblytropis,Daltoniaceae Solmsia,Dicranaceae Cynodon,Ditrichaceae Swartzia,Ditrichaceae Leersia,Encalyptaceae Cuspidaria,Entodontaceae Micromitrium,Ephemeraceae Polypodiopsis,Fissidentaceae Corynotheca,Funariaceae Microstegium,Funariaceae Harrisonia,Hedwigiaceae Harveya,Hookeriaceae Hypopterygium,Hookeriaceae Ctenium,Hypnaceae Massularia,Jungermanniaceae Cladocolea,Lejeuneaceae Lasia,Leptodontaceae Hygrophila,Marchantiaceae Mastigophora,Lepicoleaceae Coelidium,Meteoriaceae Tricholepis,Meteoriaceae Mnium,Calypogeiaceae Distichia,Neckeraceae Craspedophyllum,Orthotrichaceae Oxymitra,Annonaceae Blyttia,Pallaviciniaceae Asteriscium,Pottiaceae Mollia,Pottiaceae Pachyneurum,Pottiaceae Esenbeckia,Pterobryaceae Brachypodium,Ptychomitriaceae Acanthocladium,Sematophyllaceae Rauia,Thuidiaceae Acanthodium,Acanthaceae Acosta,Compositae Adelia,Oleaceae Alliaria,Meliaceae Anacampseros,Crassulaceae Arthraxon,Loranthaceae Balbisia,Compositae Bartonia,Loasaceae Bassia,Sapotaceae Benthamia,Cornaceae Blechum,Blechnaceae Brachyloma,Gesneriaceae Brocchia,Simmondsiaceae Brugmansia,Rafflesiaceae Bruguiera,Combretaceae Brya,Chrysobalanaceae Calophyllum,Calophyllaceae Cedrus,Meliaceae Condalia,Rubiaceae Crepidophyllum,Hymenophyllaceae Cyrtanthus,Rubiaceae Darcya,Solanaceae Dianthera,Cleomaceae Ditrichum,Compositae Donax,Poaceae Drummondia,Saxifragaceae Dryopteris,Pteridaceae Dunalia,Araceae Dusenia,Compositae Duvalia,Leguminosae Eria,Ericaceae Erucaria,Poaceae Eustegia,Melastomataceae Filicula,Woodsiaceae Flemingia,Rubiaceae Froelichia,Rubiaceae Gastrochilus,Zingiberaceae Gerardia,Acanthaceae Gertrudia,Flacourtiaceae Gymnotheca,Marattiaceae Haemanthus,Asparagaceae Hedwigia,Burseraceae Helicophyllum,Araceae Heliohebe,Scrophulariaceae Hepatica,Conocephalaceae Heteroneurum,Lomariopsidaceae Honckenya,Malvaceae Hornschuchia,Sapotaceae Hutchinsonia,Compositae Hymenolepis,Polypodiaceae Joannesia,Compositae Jonesia,Leguminosae Leptopyrum,Poaceae Lichtensteinia,Loranthaceae Lightfootia,Bixaceae Lophiocarpus,Alismataceae Lopholepis,Polypodiaceae Lumnitzera,Lamiaceae Mammea,Clusiaceae Manettia,Scrophulariaceae Mannia,Simaroubaceae Meeboldia,Capparaceae Mertensia,Gleicheniaceae Meyenia,Acanthaceae Meyenia,Cactaceae Micranthus,Acanthaceae Myzorrhiza,Scrophulariaceae Neesia,Compositae Nivenia,Proteaceae Odontitella,Scrophulariaceae Onychium,Orchidaceae Pachypodium,Brassicaceae Panzeria,Lamiaceae Parmentiera,Solanaceae Piquetia,Aizoaceae Platyloma,Pteridaceae Pleuridium,Polypodiaceae Razoumofskya,Loranthaceae Reinwardtia,Convolvulaceae Rhacoma,Compositae Richardia,Compositae Richea,Ericaceae Roemeria,Poaceae Roscoea,Lamiaceae Roylea,Poaceae Schrebera,Celastraceae Sebastiania,Compositae Silvia,Lauraceae Solena,Rubiaceae Solenopsis,Solanaceae Spiranthera,Convolvulaceae Spirostachys,Amaranthaceae Stipularia,Ranunculaceae Thomandersia,Thomandersiaceae Tillandsia,Asparagaceae Trichocyclus,Aizoaceae Uncaria,Pedaliaceae Urtica,Moraceae Usteria,Euphorbiaceae Wahlenbergia,Compositae Waitzia,Iridaceae Webera,Rubiaceae Wedelia,Nyctaginaceae Welwitschia,Polemoniaceae Wettsteinia,Compositae Wiborgia,Compositae Wilhelmsia,Poaceae Ziziphus,Cannabaceae Petagnia,Apiaceae Gilibertia,Araliaceae Bonapartea,Asparagaceae Phalangium,Asparagaceae Phalangium,Iridaceae Phalangium,Xanthorrhoeaceae Kaulfussia,Compositae Myconia,Compositae Omalanthus,Compositae Banalia,Amaranthaceae Acetosella,Polygonaceae Rhynchocarpa,Cucurbitaceae Candollea,Dilleniaceae Rostellaria,Sapotaceae Rhynchocarpa,Leguminosae Cynoctonum,Apocynaceae Goeppertia,Gentianaceae Cynoctonum,Loganiaceae Griffithia,Rubiaceae Rostellaria,Acanthaceae Myconia,Gesneriaceae Zappania,Lamiaceae Moniera,Plantaginaceae Zappania,Verbenaceae Goeppertia,Lauraceae Griffithia,Annonaceae Atomostigma,Chrysobalanaceae Cycnia,Chrysobalanaceae Banalia,Euphorbiaceae Omalanthus,Euphorbiaceae Guidonia,Flacourtiaceae Tulasnea,Podostemaceae Guidonia,Salicaceae Tulasnea,Melastomataceae Acetosella,Oxalidaceae Bonapartea,Bromeliaceae Atomostigma,Rosaceae Cycnia,Rosaceae Gilibertia,Meliaceae Moniera,Rutaceae Petagnia,Solanaceae Kaulfussia,Marattiaceae Candollea,Polypodiaceae \ No newline at end of file +genus,family Asteriscium,Compositae Benthamia,Boraginaceae Brodiaea,Amaryllidaceae Bridgesia,Cactaceae Brodiaea,Amaryllidaceae Bulbostylis,Compositae Heeria,Melastomataceae Holboellia,Berberidaceae Humboldtia,Orchidaceae Isoloma,Lindsaeaceae Laxmannia,Compositae Lepidostemon,Convolvulaceae Myrmecophila,Polypodiaceae Oreocallis,Ericaceae Parsonsia,Lythraceae Pseudogaltonia,Liliaceae Schmidtia,Compositae Swartzia,Solanaceae Thomandersia,Schlegeliaceae Washingtonia,Apiaceae Malacocarpus,Cactaceae Limnobium,Amblystegiaceae Pleuridium,Archidiaceae Grimaldia,Aytoniaceae Burnettia,Brachytheciaceae Pancovia,Brachytheciaceae Lamprophyllum,Bryaceae Zieria,Bryaceae Solmsia,Dicranaceae Cynodon,Ditrichaceae Swartzia,Ditrichaceae Leersia,Encalyptaceae Cuspidaria,Entodontaceae Micromitrium,Ephemeraceae Polypodiopsis,Fissidentaceae Corynotheca,Funariaceae Microstegium,Funariaceae Harrisonia,Hedwigiaceae Harveya,Hookeriaceae Hypopterygium,Hookeriaceae Ctenium,Hypnaceae Massularia,Jungermanniaceae Cladocolea,Lejeuneaceae Lasia,Leptodontaceae Hygrophila,Marchantiaceae Mastigophora,Lepicoleaceae Coelidium,Meteoriaceae Tricholepis,Meteoriaceae Mnium,Calypogeiaceae Distichia,Neckeraceae Craspedophyllum,Orthotrichaceae Oxymitra,Annonaceae Blyttia,Pallaviciniaceae Asteriscium,Pottiaceae Mollia,Pottiaceae Pachyneurum,Pottiaceae Esenbeckia,Pterobryaceae Brachypodium,Ptychomitriaceae Acanthocladium,Sematophyllaceae Rauia,Thuidiaceae Acanthodium,Acanthaceae Acosta,Compositae Adelia,Oleaceae Alliaria,Meliaceae Anacampseros,Crassulaceae Arthraxon,Loranthaceae Balbisia,Compositae Bartonia,Loasaceae Bassia,Sapotaceae Benthamia,Cornaceae Blechum,Blechnaceae Brachyloma,Gesneriaceae Brocchia,Simmondsiaceae Brugmansia,Rafflesiaceae Bruguiera,Combretaceae Brya,Chrysobalanaceae Calophyllum,Calophyllaceae Cedrus,Meliaceae Condalia,Rubiaceae Crepidophyllum,Hymenophyllaceae Cyrtanthus,Rubiaceae Darcya,Solanaceae Dianthera,Cleomaceae Ditrichum,Compositae Donax,Poaceae Drummondia,Saxifragaceae Dryopteris,Pteridaceae Dunalia,Araceae Dusenia,Compositae Duvalia,Leguminosae Eria,Ericaceae Erucaria,Poaceae Eustegia,Melastomataceae Filicula,Woodsiaceae Flemingia,Rubiaceae Froelichia,Rubiaceae Gastrochilus,Zingiberaceae Gerardia,Acanthaceae Gertrudia,Flacourtiaceae Gymnotheca,Marattiaceae Haemanthus,Asparagaceae Hedwigia,Burseraceae Helicophyllum,Araceae Heliohebe,Scrophulariaceae Hepatica,Conocephalaceae Heteroneurum,Lomariopsidaceae Honckenya,Malvaceae Hornschuchia,Sapotaceae Hutchinsonia,Compositae Hymenolepis,Polypodiaceae Joannesia,Compositae Jonesia,Leguminosae Leptopyrum,Poaceae Lichtensteinia,Loranthaceae Lightfootia,Bixaceae Lophiocarpus,Alismataceae Lopholepis,Polypodiaceae Lumnitzera,Lamiaceae Mammea,Clusiaceae Manettia,Scrophulariaceae Mannia,Simaroubaceae Meeboldia,Capparaceae Mertensia,Gleicheniaceae Meyenia,Acanthaceae Meyenia,Cactaceae Micranthus,Acanthaceae Myzorrhiza,Scrophulariaceae Neesia,Compositae Nivenia,Proteaceae Odontitella,Scrophulariaceae Onychium,Orchidaceae Pachypodium,Brassicaceae Panzeria,Lamiaceae Parmentiera,Solanaceae Piquetia,Aizoaceae Platyloma,Pteridaceae Pleuridium,Polypodiaceae Razoumofskya,Loranthaceae Reinwardtia,Convolvulaceae Rhacoma,Compositae Richardia,Compositae Richea,Ericaceae Roemeria,Poaceae Roscoea,Lamiaceae Roylea,Poaceae Schrebera,Celastraceae Sebastiania,Compositae Silvia,Lauraceae Solena,Rubiaceae Solenopsis,Solanaceae Spiranthera,Convolvulaceae Spirostachys,Amaranthaceae Stipularia,Ranunculaceae Thomandersia,Thomandersiaceae Tillandsia,Asparagaceae Trichocyclus,Aizoaceae Uncaria,Pedaliaceae Urtica,Moraceae Usteria,Euphorbiaceae Wahlenbergia,Compositae Waitzia,Iridaceae Webera,Rubiaceae Wedelia,Nyctaginaceae Welwitschia,Polemoniaceae Wettsteinia,Compositae Wiborgia,Compositae Wilhelmsia,Poaceae Ziziphus,Cannabaceae Petagnia,Apiaceae Gilibertia,Araliaceae Bonapartea,Asparagaceae Phalangium,Asparagaceae Phalangium,Iridaceae Phalangium,Xanthorrhoeaceae Kaulfussia,Compositae Myconia,Compositae Omalanthus,Compositae Banalia,Amaranthaceae Acetosella,Polygonaceae Rhynchocarpa,Cucurbitaceae Candollea,Dilleniaceae Rostellaria,Sapotaceae Rhynchocarpa,Leguminosae Cynoctonum,Apocynaceae Goeppertia,Gentianaceae Cynoctonum,Loganiaceae Griffithia,Rubiaceae Rostellaria,Acanthaceae Myconia,Gesneriaceae Zappania,Lamiaceae Moniera,Plantaginaceae Zappania,Verbenaceae Goeppertia,Lauraceae Griffithia,Annonaceae Atomostigma,Chrysobalanaceae Cycnia,Chrysobalanaceae Banalia,Euphorbiaceae Omalanthus,Euphorbiaceae Guidonia,Flacourtiaceae Tulasnea,Podostemaceae Guidonia,Salicaceae Tulasnea,Melastomataceae Acetosella,Oxalidaceae Bonapartea,Bromeliaceae Atomostigma,Rosaceae Cycnia,Rosaceae Gilibertia,Meliaceae Moniera,Rutaceae Petagnia,Solanaceae Kaulfussia,Marattiaceae Candollea,Polypodiaceae Talbotia,Acanthaceae Amblytropis,Leguminosae Adelanthus,Icacinaceae Schroeterella,Zygophyllaceae \ No newline at end of file