diff --git a/config/traits.yml b/config/traits.yml index 73e094094..2e522f4bb 100644 --- a/config/traits.yml +++ b/config/traits.yml @@ -5,7 +5,8 @@ traits: leaf_Al_per_dry_mass: label: Leaf aluminium (Al) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of aluminium - [CHEBI:28984] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:28984] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of aluminium in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -15,7 +16,8 @@ traits: leaf_B_per_dry_mass: label: Leaf boron (B) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of boron [CHEBI:27560] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of boron in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -25,7 +27,8 @@ traits: leaf_C_per_dry_mass: label: Leaf carbon (C) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carbon [CHEBI:27594] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of carbon in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -35,7 +38,8 @@ traits: leaf_Ca_per_dry_mass: label: Leaf calcium (Ca) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium - [CHEBI:22984] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:22984] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of calcium in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -45,7 +49,8 @@ traits: leaf_Cl_per_dry_mass: label: Leaf chlorine (Cl) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorine - [CHEBI:23116] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:23116] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of chlorine in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -55,7 +60,8 @@ traits: leaf_Cr_per_dry_mass: label: Leaf chromium (Cr) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chromium - [CHEBI:28073] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:28073] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of chromium in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: ppm @@ -65,7 +71,8 @@ traits: leaf_Co_per_dry_mass: label: Leaf cobalt (Co) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of cobalt [CHEBI:27638] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of cobalt in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: ppm @@ -75,7 +82,8 @@ traits: leaf_Cu_per_dry_mass: label: Leaf copper (Cu) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of copper [CHEBI:28694] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of copper in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -85,7 +93,8 @@ traits: leaf_Fe_per_dry_mass: label: Leaf iron (Fe) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of iron [CHEBI:18248] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of iron in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -95,7 +104,8 @@ traits: leaf_K_per_area: label: Leaf potassium (K) content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium - [CHEBI:26216] in a leaf [PO:0025034] to leaf area [PATO:0001323]. + [CHEBI:26216] in a leaf [PO:0025034] to leaf area [PATO:0001323].;The ratio + of the mass of potassium in a leaf to leaf area. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: g/m2 @@ -105,7 +115,8 @@ traits: leaf_K_per_dry_mass: label: Leaf potassium (K) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium - [CHEBI:26216] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:26216] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of potassium in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -115,7 +126,8 @@ traits: leaf_Mg_per_dry_mass: label: Leaf magnesium (Mg) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of magnesium - [CHEBI:25107] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:25107] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of magnesium in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -125,7 +137,8 @@ traits: leaf_Mn_per_dry_mass: label: Leaf manganese (Mn) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of manganese - [CHEBI:18291] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:18291] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of manganese in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -135,7 +148,8 @@ traits: leaf_Mo_per_dry_mass: label: Leaf molybdenum (Mo) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of molybdenum - [CHEBI:28685] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:28685] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of molybdenum in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -145,7 +159,8 @@ traits: leaf_N_per_area: label: Leaf nitrogen (N) content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in a leaf [PO:0025034] to leaf area [PATO:0001323]. + [CHEBI:25555] in a leaf [PO:0025034] to leaf area [PATO:0001323].;The ratio + of the mass of nitrogen in a leaf to leaf area. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: g/m2 @@ -155,7 +170,8 @@ traits: leaf_N_per_dry_mass: label: Leaf nitrogen (N) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:25555] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of nitrogen in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -165,7 +181,8 @@ traits: leaf_Na_per_dry_mass: label: Leaf sodium (Na) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sodium [CHEBI:26708] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of sodium in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -175,7 +192,8 @@ traits: leaf_Ni_per_dry_mass: label: Leaf nickel (Ni) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nickel [CHEBI:28112] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of nickel in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -185,7 +203,8 @@ traits: leaf_P_per_area: label: Leaf phosphorus (P) content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in a leaf [PO:0025034] to leaf area [PATO:0001323]. + [CHEBI:28659] in a leaf [PO:0025034] to leaf area [PATO:0001323].;The ratio + of the mass of phosphorus in a leaf to leaf area. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: g/m2 @@ -195,7 +214,8 @@ traits: leaf_P_per_dry_mass: label: Leaf phosphorus (P) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:28659] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of phosphorus in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -205,7 +225,8 @@ traits: leaf_S_per_dry_mass: label: Leaf sulphur (S) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sulphur - [CHEBI:26833] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:26833] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of sulphur in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -215,7 +236,8 @@ traits: leaf_Se_per_dry_mass: label: Leaf selenium (Se) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of selenium - [CHEBI:27568] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:27568] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of selenium in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: ppm @@ -225,7 +247,8 @@ traits: leaf_Si_per_dry_mass: label: Leaf silicon (Si) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of silicon - [CHEBI:27573] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:27573] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of silicon in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. Leaf silicon (Si) must not be confused with leaf silica (SiO2). In plants, Si is mostly found as hydrated amorphous silica (SiO2 , nH2O). @@ -237,7 +260,8 @@ traits: leaf_Zn_per_dry_mass: label: Leaf zinc (Zn) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of zinc [CHEBI:27363] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of zinc in a leaf to leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -247,7 +271,8 @@ traits: leaf_CN_ratio: label: Leaf carbon to nitrogen ratio (C/N) description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carbon [CHEBI:27594] - in a leaf [PO:0025034] to the mass of nitrogen [CHEBI:25555] in the leaf. + in a leaf [PO:0025034] to the mass of nitrogen [CHEBI:25555] in the leaf.;The + ratio of the mass of carbon in a leaf to the mass of nitrogen in the leaf. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: g/g @@ -258,6 +283,7 @@ traits: label: Leaf nitrogen to phosphorus ratio (N/P) per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen [CHEBI:25555] in a leaf [PO:0025034] to the mass of phosphorus [CHEBI:28659] + in the leaf.;The ratio of the mass of nitrogen in a leaf to the mass of phosphorus in the leaf. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric @@ -269,7 +295,9 @@ traits: label: Senesced leaf aluminium (Al) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of aluminium [CHEBI:28984] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of aluminium in a senescent leaf (leaf litter) to the senescent leaf + dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -280,7 +308,8 @@ traits: label: Senesced leaf boron (B) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of boron [CHEBI:27560] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter [ENVO:01000628]) - to the senescent leaf dry mass [TO:0001014]. + to the senescent leaf dry mass [TO:0001014].;The ratio of the mass of boron + in a senescent leaf (leaf litter) to the senescent leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -291,7 +320,8 @@ traits: label: Senesced leaf carbon (C) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carbon [CHEBI:27594] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter [ENVO:01000628]) - to the senescent leaf dry mass [TO:0001014]. + to the senescent leaf dry mass [TO:0001014].;The ratio of the mass of carbon + in a senescent leaf (leaf litter) to the senescent leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: g/g @@ -302,7 +332,9 @@ traits: label: Senesced leaf calcium (Ca) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium [CHEBI:22984] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of calcium in a senescent leaf (leaf litter) to the senescent leaf + dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -313,7 +345,8 @@ traits: label: Senesced leaf copper (Cu) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of copper [CHEBI:28694] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter [ENVO:01000628]) - to the senescent leaf dry mass [TO:0001014]. + to the senescent leaf dry mass [TO:0001014].;The ratio of the mass of copper + in a senescent leaf (leaf litter) to the senescent leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -324,7 +357,8 @@ traits: label: Senesced leaf iron (Fe) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of iron [CHEBI:18248] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter [ENVO:01000628]) - to the senescent leaf dry mass [TO:0001014]. + to the senescent leaf dry mass [TO:0001014].;The ratio of the mass of iron + in a senescent leaf (leaf litter) to the senescent leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -335,7 +369,9 @@ traits: label: Senesced leaf potassium (K) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium [CHEBI:26216] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of potassium in a senescent leaf (leaf litter) to the senescent leaf + dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -346,7 +382,9 @@ traits: label: Senesced leaf magnesium (Mg) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of magnesium [CHEBI:25107] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of magnesium in a senescent leaf (leaf litter) to the senescent leaf + dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -357,7 +395,9 @@ traits: label: Senesced leaf manganese (Mn) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of manganese [CHEBI:18291] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of manganese in a senescent leaf (leaf litter) to the senescent leaf + dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -368,7 +408,9 @@ traits: label: Senesced leaf molybdenum (Mo) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of molybdenum [CHEBI:28685] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of molybdenum in a senescent leaf (leaf litter) to the senescent + leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -379,7 +421,9 @@ traits: label: Senesced leaf nitrogen (N) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen [CHEBI:25555] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of nitrogen in a senescent leaf (leaf litter) to the senescent leaf + dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -390,18 +434,20 @@ traits: label: Senesced leaf sodium (Na) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sodium [CHEBI:26708] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter [ENVO:01000628]) - to the senescent leaf dry mass [TO:0001014]. + to the senescent leaf dry mass [TO:0001014].;The ratio of the mass of sodium + in a senescent leaf (leaf litter) to the senescent leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg - allowed_values_min: 100.0 + allowed_values_min: 10.0 allowed_values_max: 20000.0 entity_URI: https://w3id.org/APD/traits/trait_0000140 leaf_senesced_Ni_per_dry_mass: label: Senesced leaf nickel (Ni) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nickel [CHEBI:28112] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter [ENVO:01000628]) - to the senescent leaf dry mass [TO:0001014]. + to the senescent leaf dry mass [TO:0001014].;The ratio of the mass of nickel + in a senescent leaf (leaf litter) to the senescent leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -412,7 +458,9 @@ traits: label: Senesced leaf phosphorus (P) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus [CHEBI:28659] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of phosphorus in a senescent leaf (leaf litter) to the senescent + leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/g @@ -423,7 +471,9 @@ traits: label: Senesced leaf sulphur (S) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sulphur [CHEBI:26833] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter - [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014]. + [ENVO:01000628]) to the senescent leaf dry mass [TO:0001014].;The ratio of + the mass of sulphur in a senescent leaf (leaf litter) to the senescent leaf + dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -434,7 +484,8 @@ traits: label: Senesced leaf zinc (Zn) content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of zinc [CHEBI:27363] in a senescent [PATO:0001487] leaf [PO:0025034] (leaf litter [ENVO:01000628]) - to the senescent leaf dry mass [TO:0001014]. + to the senescent leaf dry mass [TO:0001014].;The ratio of the mass of zinc + in a senescent leaf (leaf litter) to the senescent leaf dry mass. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/kg @@ -444,7 +495,8 @@ traits: stem_C_per_dry_mass: label: Stem carbon (C) content per unit stem dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carbon [CHEBI:27594] - in a stem [PO:0009047] to stem dry mass. + in a stem [PO:0009047] to stem dry mass.;The ratio of the mass of carbon in + a stem to stem dry mass. type: numeric units: mg/g allowed_values_min: 100.0 @@ -453,7 +505,8 @@ traits: stem_N_per_dry_mass: label: Stem nitrogen (N) content per unit stem dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in a stem [PO:0009047] to stem dry mass. + [CHEBI:25555] in a stem [PO:0009047] to stem dry mass.;The ratio of the mass + of nitrogen in a stem to stem dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -462,7 +515,8 @@ traits: wood_C_per_dry_mass: label: Wood carbon (C) content per unit wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carbon [CHEBI:27594] - in wood [PO:0005848] to wood dry mass. + in wood [PO:0005848] to wood dry mass.;The ratio of the mass of carbon in + wood to wood dry mass. type: numeric units: mg/g allowed_values_min: 50.0 @@ -471,7 +525,8 @@ traits: wood_Ca_per_dry_mass: label: Wood calcium (Ca) content per unit wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium - [CHEBI:22984] in wood [PO:0005848] to wood dry mass. + [CHEBI:22984] in wood [PO:0005848] to wood dry mass.;The ratio of the mass + of calcium in wood to wood dry mass. type: numeric units: mg/g allowed_values_min: 0.001 @@ -480,7 +535,8 @@ traits: wood_K_per_dry_mass: label: Wood potassium (K) content per unit wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium - [CHEBI:26216] in wood [PO:0005848] to wood dry mass. + [CHEBI:26216] in wood [PO:0005848] to wood dry mass.;The ratio of the mass + of potassium in wood to wood dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -489,7 +545,8 @@ traits: wood_Mg_per_dry_mass: label: Wood magnesium (Mg) content per unit wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of magnesium - [CHEBI:25107] in wood [PO:0005848] to wood dry mass. + [CHEBI:25107] in wood [PO:0005848] to wood dry mass.;The ratio of the mass + of magnesium in wood to wood dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -498,7 +555,8 @@ traits: wood_N_per_dry_mass: label: Wood nitrogen (N) content per unit wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in wood [PO:0005848] to wood dry mass. + [CHEBI:25555] in wood [PO:0005848] to wood dry mass.;The ratio of the mass + of nitrogen in wood to wood dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -507,7 +565,8 @@ traits: wood_Na_per_dry_mass: label: Wood sodium (Na) content per unit wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sodium [CHEBI:26708] - in wood [PO:0005848] to wood dry mass. + in wood [PO:0005848] to wood dry mass.;The ratio of the mass of sodium in + wood to wood dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -516,7 +575,8 @@ traits: wood_P_per_dry_mass: label: Wood phosphorus (P) content per unit wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in wood [PO:0005848] to wood dry mass. + [CHEBI:28659] in wood [PO:0005848] to wood dry mass.;The ratio of the mass + of phosphorus in wood to wood dry mass. type: numeric units: mg/g allowed_values_min: 0.001 @@ -526,7 +586,8 @@ traits: label: Dead wood calcium (Ca) content per unit dead wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium [CHEBI:22984] in senescent [PATO:0001487] wood [PO:0005848] (litter [ENVO:01000628]) - to the dry mass of the senesced wood. + to the dry mass of the senesced wood.;The ratio of the mass of calcium in + senescent wood (litter) to the dry mass of the senesced wood. type: numeric units: mg/g allowed_values_min: 0.1 @@ -536,7 +597,8 @@ traits: label: Dead wood potassium (K) content per unit dead wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium [CHEBI:26216] in senescent [PATO:0001487] wood [PO:0005848] (litter [ENVO:01000628]) - to the dry mass of the senesced wood. + to the dry mass of the senesced wood.;The ratio of the mass of potassium in + senescent wood (litter) to the dry mass of the senesced wood. type: numeric units: mg/g allowed_values_min: 0.01 @@ -546,7 +608,8 @@ traits: label: Dead wood magnesium (Mg) content per unit dead wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of magnesium [CHEBI:25107] in senescent [PATO:0001487] wood [PO:0005848] (litter [ENVO:01000628]) - to the dry mass of the senesced wood. + to the dry mass of the senesced wood.;The ratio of the mass of magnesium in + senescent wood (litter) to the dry mass of the senesced wood. type: numeric units: mg/g allowed_values_min: 0.01 @@ -556,7 +619,8 @@ traits: label: Dead wood nitrogen (N) content per unit dead wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen [CHEBI:25555] in senescent [PATO:0001487] wood [PO:0005848] (litter [ENVO:01000628]) - to the dry mass of the senesced wood. + to the dry mass of the senesced wood.;The ratio of the mass of nitrogen in + senescent wood (litter) to the dry mass of the senesced wood. type: numeric units: mg/g allowed_values_min: 0.1 @@ -566,7 +630,8 @@ traits: label: Dead wood sodium (Na) content per unit dead wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sodium [CHEBI:26708] in senescent [PATO:0001487] wood [PO:0005848] (litter [ENVO:01000628]) to - the dry mass of the senesced wood. + the dry mass of the senesced wood.;The ratio of the mass of sodium in senescent + wood (litter) to the dry mass of the senesced wood. type: numeric units: mg/g allowed_values_min: 0.001 @@ -576,7 +641,8 @@ traits: label: Dead wood phosphorus (P) content per unit dead wood dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus [CHEBI:28659] in senescent [PATO:0001487] wood [PO:0005848] (litter [ENVO:01000628]) - to the dry mass of the senesced wood. + to the dry mass of the senesced wood.;The ratio of the mass of phosphorus + in senescent wood (litter) to the dry mass of the senesced wood. type: numeric units: mg/g allowed_values_min: 0.001 @@ -585,7 +651,8 @@ traits: bark_Al_per_dry_mass: label: Bark aluminium (Al) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of aluminium - [CHEBI:28984] in bark [PO:0004518] to bark dry mass. + [CHEBI:28984] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of aluminium in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -594,7 +661,8 @@ traits: bark_B_per_dry_mass: label: Bark boron (B) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of boron [CHEBI:27560] - in bark [PO:0004518] to bark dry mass. + in bark [PO:0004518] to bark dry mass.;The ratio of the mass of boron in bark + to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.001 @@ -603,7 +671,8 @@ traits: bark_C_per_dry_mass: label: Bark carbon (C) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carbon [CHEBI:27594] - in bark [PO:0004518] to bark dry mass. + in bark [PO:0004518] to bark dry mass.;The ratio of the mass of carbon in + bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 50.0 @@ -612,7 +681,8 @@ traits: bark_Ca_per_dry_mass: label: Bark calcium (Ca) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium - [CHEBI:22984] in bark [PO:0004518] to bark dry mass. + [CHEBI:22984] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of calcium in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -621,7 +691,8 @@ traits: bark_Cu_per_dry_mass: label: Bark copper (Cu) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of copper [CHEBI:28694] - in bark [PO:0004518] to bark dry mass. + in bark [PO:0004518] to bark dry mass.;The ratio of the mass of copper in + bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.0001 @@ -630,7 +701,8 @@ traits: bark_Fe_per_dry_mass: label: Bark iron (Fe) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of iron [CHEBI:18248] - in bark [PO:0004518] to bark dry mass. + in bark [PO:0004518] to bark dry mass.;The ratio of the mass of iron in bark + to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.001 @@ -639,7 +711,8 @@ traits: bark_K_per_dry_mass: label: Bark potassium (K) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium - [CHEBI:26216] in bark [PO:0004518] to bark dry mass. + [CHEBI:26216] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of potassium in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -648,7 +721,8 @@ traits: bark_Mg_per_dry_mass: label: Bark magnesium (Mg) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of magnesium - [CHEBI:25107] in bark [PO:0004518] to bark dry mass. + [CHEBI:25107] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of magnesium in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -657,7 +731,8 @@ traits: bark_Mn_per_dry_mass: label: Bark manganese (Mn) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of manganese - [CHEBI:18291] in bark [PO:0004518] to bark dry mass. + [CHEBI:18291] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of manganese in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.001 @@ -666,7 +741,8 @@ traits: bark_N_per_dry_mass: label: Bark nitrogen (N) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in bark [PO:0004518] to bark dry mass. + [CHEBI:25555] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of nitrogen in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -675,7 +751,8 @@ traits: bark_Na_per_dry_mass: label: Bark sodium (Na) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sodium [CHEBI:26708] - in bark [PO:0004518] to bark dry mass. + in bark [PO:0004518] to bark dry mass.;The ratio of the mass of sodium in + bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -684,7 +761,8 @@ traits: bark_P_per_dry_mass: label: Bark phosphorus (P) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in bark [PO:0004518] to bark dry mass. + [CHEBI:28659] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of phosphorus in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.001 @@ -693,7 +771,8 @@ traits: bark_S_per_dry_mass: label: Bark sulphur (S) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sulphur - [CHEBI:26833] in bark [PO:0004518] to bark dry mass. + [CHEBI:26833] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of sulphur in bark to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -702,7 +781,8 @@ traits: bark_Zn_per_dry_mass: label: Bark zinc (Zn) content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of zinc [CHEBI:27363] - in bark [PO:0004518] to bark dry mass. + in bark [PO:0004518] to bark dry mass.;The ratio of the mass of zinc in bark + to bark dry mass. type: numeric units: mg/g allowed_values_min: 0.001 @@ -711,7 +791,8 @@ traits: root_C_per_dry_mass: label: Root carbon (C) content per unit root dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carbon [CHEBI:27594] - in roots [PO:0009005] to root dry mass. + in roots [PO:0009005] to root dry mass.;The ratio of the mass of carbon in + roots to root dry mass. type: numeric units: mg/g allowed_values_min: 50.0 @@ -720,7 +801,8 @@ traits: root_N_per_dry_mass: label: Root nitrogen (N) content per unit root dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in roots [PO:0009005] to root dry mass. + [CHEBI:25555] in roots [PO:0009005] to root dry mass.;The ratio of the mass + of nitrogen in roots to root dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -729,7 +811,8 @@ traits: root_P_per_dry_mass: label: Root phosphorus (P) content per unit root dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in roots [PO:0009005] to root dry mass. + [CHEBI:28659] in roots [PO:0009005] to root dry mass.;The ratio of the mass + of phosphorus in roots to root dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -738,7 +821,8 @@ traits: flower_N_per_dry_mass: label: Flower nitrogen (N) content per unit flower dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in flowers [PO:0009046] to flower dry mass. + [CHEBI:25555] in flowers [PO:0009046] to flower dry mass.;The ratio of the + mass of nitrogen in flowers to flower dry mass. type: numeric units: mg/g allowed_values_min: 0.5 @@ -747,7 +831,8 @@ traits: fruit_Ca_per_dry_mass: label: Fruit calcium (Ca) content per unit fruit dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium - [CHEBI:22984] in fruit [PO:0009001] to fruit dry mass. + [CHEBI:22984] in fruit [PO:0009001] to fruit dry mass.;The ratio of the mass + of calcium in fruit to fruit dry mass. type: numeric units: mg/g allowed_values_min: 0.5 @@ -756,7 +841,8 @@ traits: fruit_K_per_dry_mass: label: Fruit potassium (K) content per unit fruit dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium - [CHEBI:26216] in fruit [PO:0009001] to fruit dry mass. + [CHEBI:26216] in fruit [PO:0009001] to fruit dry mass.;The ratio of the mass + of potassium in fruit to fruit dry mass. type: numeric units: mg/g allowed_values_min: 0.5 @@ -765,7 +851,8 @@ traits: fruit_Mg_per_dry_mass: label: Fruit magnesium (Mg) content per unit fruit dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of magnesium - [CHEBI:25107] in fruit [PO:0009001] to fruit dry mass. + [CHEBI:25107] in fruit [PO:0009001] to fruit dry mass.;The ratio of the mass + of magnesium in fruit to fruit dry mass. type: numeric units: mg/g allowed_values_min: 0.05 @@ -774,7 +861,8 @@ traits: fruit_N_per_dry_mass: label: Fruit nitrogen (N) content per unit fruit dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in fruit [PO:0009001] to fruit dry mass. + [CHEBI:25555] in fruit [PO:0009001] to fruit dry mass.;The ratio of the mass + of nitrogen in fruit to fruit dry mass. type: numeric units: mg/g allowed_values_min: 0.5 @@ -783,7 +871,8 @@ traits: fruit_P_per_dry_mass: label: Fruit phosphorus (P) content per unit fruit dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in fruit [PO:0009001] to fruit dry mass. + [CHEBI:28659] in fruit [PO:0009001] to fruit dry mass.;The ratio of the mass + of phosphorus in fruit to fruit dry mass. type: numeric units: mg/g allowed_values_min: 0.01 @@ -792,7 +881,8 @@ traits: fruit_S_per_dry_mass: label: Fruit sulphur (S) content per unit fruit dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sulphur - [CHEBI:26833] in fruit [PO:0009001] to fruit dry mass. + [CHEBI:26833] in fruit [PO:0009001] to fruit dry mass.;The ratio of the mass + of sulphur in fruit to fruit dry mass. type: numeric units: mg/g allowed_values_min: 0.05 @@ -801,7 +891,8 @@ traits: seed_Ca_per_seed_dry_mass: label: Seed calcium (Ca) content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium - [CHEBI:22984] in seeds [PO:0009010] to seed dry mass. + [CHEBI:22984] in seeds [PO:0009010] to seed dry mass.;The ratio of the mass + of calcium in seeds to seed dry mass. type: numeric units: mg/g allowed_values_min: 1.0 @@ -810,7 +901,8 @@ traits: seed_K_per_seed_dry_mass: label: Seed potassium (K) content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of potassium - [CHEBI:26216] in seeds [PO:0009010] to seed dry mass. + [CHEBI:26216] in seeds [PO:0009010] to seed dry mass.;The ratio of the mass + of potassium in seeds to seed dry mass. type: numeric units: mg/g allowed_values_min: 1.0 @@ -819,7 +911,8 @@ traits: seed_Mg_per_seed_dry_mass: label: Seed magnesium (Mg) content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of magnesium - [CHEBI:25107] in seeds [PO:0009010] to seed dry mass. + [CHEBI:25107] in seeds [PO:0009010] to seed dry mass.;The ratio of the mass + of magnesium in seeds to seed dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -828,7 +921,8 @@ traits: seed_N_per_seed_dry_mass: label: Seed nitrogen (N) content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen - [CHEBI:25555] in seeds [PO:0009010] to seed dry mass. + [CHEBI:25555] in seeds [PO:0009010] to seed dry mass.;The ratio of the mass + of nitrogen in seeds to seed dry mass. type: numeric units: mg/g allowed_values_min: 10.0 @@ -837,7 +931,8 @@ traits: seed_P_per_seed_dry_mass: label: Seed phosphorus (P) content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in seeds [PO:0009010] to seed dry mass. + [CHEBI:28659] in seeds [PO:0009010] to seed dry mass.;The ratio of the mass + of phosphorus in seeds to seed dry mass. type: numeric units: mg/g allowed_values_min: 1.0 @@ -846,7 +941,8 @@ traits: seed_S_per_seed_dry_mass: label: Seed sulphur (S) content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of sulphur - [CHEBI:26833] in seeds [PO:0009010] to seed dry mass. + [CHEBI:26833] in seeds [PO:0009010] to seed dry mass.;The ratio of the mass + of sulphur in seeds to seed dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -856,7 +952,8 @@ traits: label: Leaf cell wall nitrogen (N) per unit cell wall dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen [CHEBI:25555] in the plant cell wall [GO:0009505] in a leaf [PO:0025034] to - the cell wall dry mass in the leaf. + the cell wall dry mass in the leaf.;The ratio of the mass of nitrogen in the + plant cell wall in a leaf to the cell wall dry mass in the leaf. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mmol{N}/g @@ -867,7 +964,8 @@ traits: label: Leaf cell wall nitrogen (N) per unit leaf N content description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen [CHEBI:25555] in the plant cell wall [GO:0009505] in a leaf [PO:0025034] to - the mass of nitrogen in the leaf. + the mass of nitrogen in the leaf.;The ratio of the mass of nitrogen in the + plant cell wall in a leaf to the mass of nitrogen in the leaf. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: mg/mg @@ -878,7 +976,8 @@ traits: label: Leaf rubisco nitrogen (N) content per unit leaf N content description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen [CHEBI:25555] in rubisco [MESH:D012273] in a leaf [PO:0025034] to the mass - of nitrogen in a leaf. + of nitrogen in a leaf.;The ratio of the mass of nitrogen in rubisco in a leaf + to the mass of nitrogen in a leaf. comments: This trait is most commonly measured on leaf tissue. If the Rubisco concentration of a different tissue is measured, this should be explicitly noted in the methods or as a method context. @@ -891,7 +990,8 @@ traits: label: Leaf thylakoid protein nitrogen (N) content per unit leaf N content description: The ratio [PATO:0001470] of the mass [PATO:0000125] of nitrogen [CHEBI:25555] in thylakoid [GO:0009579] proteins [CHEBI:36080] in a leaf [PO:0025034] - to the mass of nitrogen in a leaf. + to the mass of nitrogen in a leaf.;The ratio of the mass of nitrogen in thylakoid + proteins in a leaf to the mass of nitrogen in a leaf. comments: This trait is most commonly measured on leaf tissue. If the Rubisco concentration of a different tissue is measured, this should be explicitly noted in the methods or as a method context. @@ -904,7 +1004,8 @@ traits: label: Leaf epidermis calcium (Ca) content per unit leaf fresh mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium [CHEBI:22984] in epidermal cells [PO:0004013] to epidermal cell fresh mass - [APD:glossary/40044]. + [APD:glossary/40044].;The ratio of the mass of calcium in epidermal cells + to epidermal cell fresh mass. type: numeric units: umol/g allowed_values_min: 1.0 @@ -913,7 +1014,8 @@ traits: leaf_hypodermis_Ca_per_fresh_mass: label: Leaf hypodermis calcium (Ca) content per unit leaf fresh mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium - [CHEBI:22984] in the hypodermis [PO:0005051] to hypodermis fresh mass [APD:glossary/40044]. + [CHEBI:22984] in the hypodermis [PO:0005051] to hypodermis fresh mass [APD:glossary/40044].;The + ratio of the mass of calcium in the hypodermis to hypodermis fresh mass. type: numeric units: umol/g allowed_values_min: 1.0 @@ -924,7 +1026,8 @@ traits: mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium [CHEBI:22984] in parenchyma cells [PO:0000074] to parenchyma cell fresh mass - [APD:glossary/40044]. + [APD:glossary/40044].;The ratio of the mass of calcium in parenchyma cells + to parenchyma cell fresh mass. type: numeric units: umol/g allowed_values_min: 1.0 @@ -935,7 +1038,8 @@ traits: mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium [CHEBI:22984] in palisade mesophyll cells [PO:0006206] to palisade mesophyll - cell fresh mass [APD:glossary/40044]. + cell fresh mass [APD:glossary/40044].;The ratio of the mass of calcium in + palisade mesophyll cells to palisade mesophyll cell fresh mass. type: numeric units: umol/g allowed_values_min: 1.0 @@ -945,7 +1049,8 @@ traits: label: Leaf sclerenchyma cell calcium (Ca) content per unit leaf fresh mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium [CHEBI:22984] in sclerenchyma cells [PO:0000077] to sclerenchyma cell fresh - mass [APD:glossary/40044]. + mass [APD:glossary/40044].;The ratio of the mass of calcium in sclerenchyma + cells to sclerenchyma cell fresh mass. type: numeric units: umol/g allowed_values_min: 1.0 @@ -955,7 +1060,8 @@ traits: label: Leaf spongy mesophyll cell calcium (Ca) content per unit leaf fresh mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of calcium [CHEBI:22984] in spongy mesophyll cells [PO:0006205] to spongy mesophyll cell - fresh mass [APD:glossary/40044]. + fresh mass [APD:glossary/40044].;The ratio of the mass of calcium in spongy + mesophyll cells to spongy mesophyll cell fresh mass. type: numeric units: umol/g allowed_values_min: 1.0 @@ -965,7 +1071,8 @@ traits: label: Leaf epidermis phosphorus (P) content per unit leaf fresh mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus [CHEBI:28659] in epidermal cells [PO:0004013] to epidermal cell fresh mass - [APD:glossary/40044]. + [APD:glossary/40044].;The ratio of the mass of phosphorus in epidermal cells + to epidermal cell fresh mass. type: numeric units: umol/g allowed_values_min: 0.0 @@ -974,7 +1081,8 @@ traits: leaf_hypodermis_P_per_fresh_mass: label: Leaf hypodermis phosphorus (P) content per unit leaf fresh mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus - [CHEBI:28659] in the hypodermis [PO:0005051] to hypodermis fresh mass [APD:glossary/40044]. + [CHEBI:28659] in the hypodermis [PO:0005051] to hypodermis fresh mass [APD:glossary/40044].;The + ratio of the mass of phosphorus in the hypodermis to hypodermis fresh mass. type: numeric units: umol/g allowed_values_min: 0.0 @@ -985,7 +1093,8 @@ traits: mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus [CHEBI:28659] in parenchyma cells [PO:0000074] to parenchyma cell fresh mass - [APD:glossary/40044]. + [APD:glossary/40044].;The ratio of the mass of phosphorus in parenchyma cells + to parenchyma cell fresh mass. type: numeric units: umol/g allowed_values_min: 0.0 @@ -996,7 +1105,8 @@ traits: mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus [CHEBI:28659] in palisade mesophyll cells [PO:0006206] to palisade mesophyll - cell fresh mass [APD:glossary/40044]. + cell fresh mass [APD:glossary/40044].;The ratio of the mass of phosphorus + in palisade mesophyll cells to palisade mesophyll cell fresh mass. type: numeric units: umol/g allowed_values_min: 0.0 @@ -1006,7 +1116,8 @@ traits: label: Leaf sclerenchyma cell phosphorus (P) content per unit leaf fresh mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus [CHEBI:28659] in sclerenchyma cells [PO:0000077] to sclerenchyma cell fresh - mass [APD:glossary/40044]. + mass [APD:glossary/40044].;The ratio of the mass of phosphorus in sclerenchyma + cells to sclerenchyma cell fresh mass. type: numeric units: umol/g allowed_values_min: 0.0 @@ -1017,7 +1128,8 @@ traits: mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phosphorus [CHEBI:28659] in spongy mesophyll cells [PO:0006205] to spongy mesophyll cell - fresh mass [APD:glossary/40044]. + fresh mass [APD:glossary/40044].;The ratio of the mass of phosphorus in spongy + mesophyll cells to spongy mesophyll cell fresh mass. type: numeric units: umol/g allowed_values_min: 0.0 @@ -1028,7 +1140,9 @@ traits: description: The ratio [PATO:0001470] of the mass [PATO:0000125] of non-structural carbohydrates [CHEBI:16646] (sugars [APD:glossary/40106]) in a leaf [PO:0025034] to leaf area [PATO:0001323], where non-structural carbohydrates are carbohydrates - that do not comprise the cell wall [GO:0009505]. + that do not comprise the cell wall [GO:0009505].;The ratio of the mass of + non-structural carbohydrates (sugars) in a leaf to leaf area, where non-structural + carbohydrates are carbohydrates that do not comprise the cell wall. type: numeric units: g/m2 allowed_values_min: 0.1 @@ -1039,7 +1153,9 @@ traits: description: The ratio [PATO:0001470] of the mass [PATO:0000125] of non-structural carbohydrates [CHEBI:16646] (sugars [APD:glossary/40106]) in a leaf [PO:0025034] to leaf dry mass [TO:0001014], where non-structural carbohydrates are carbohydrates - that do not comprise the cell wall [GO:0009505]. + that do not comprise the cell wall [GO:0009505].;The ratio of the mass of + non-structural carbohydrates (sugars) in a leaf to leaf dry mass, where non-structural + carbohydrates are carbohydrates that do not comprise the cell wall. type: numeric units: mg/g allowed_values_min: 10.0 @@ -1048,7 +1164,8 @@ traits: leaf_cellulose_per_dry_mass: label: Leaf cellulose content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of cellulose - [CHEBI:62967] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:62967] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of cellulose in a leaf to leaf dry mass. type: numeric units: mg/mg allowed_values_min: 0.01 @@ -1057,7 +1174,8 @@ traits: leaf_starch_per_area: label: Leaf starch content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of total starch - [CHEBI:28017] in a leaf [PO:0025034] to leaf area [PATO:0001323]. + [CHEBI:28017] in a leaf [PO:0025034] to leaf area [PATO:0001323].;The ratio + of the mass of total starch in a leaf to leaf area. type: numeric units: g/m2 allowed_values_min: 0.1 @@ -1067,7 +1185,8 @@ traits: label: Leaf soluble starch content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of water [CHEBI:15377] soluble [PATO:0001537] starch [CHEBI:28017] in a leaf [PO:0025034] to leaf - area [PATO:0001323]. + area [PATO:0001323].;The ratio of the mass of water soluble starch in a leaf + to leaf area. type: numeric units: g/m2 allowed_values_min: 0.1 @@ -1077,7 +1196,8 @@ traits: label: Leaf soluble starch content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of water [CHEBI:15377] soluble [PATO:0001537] starch [CHEBI:28017] in a leaf [PO:0025034] to leaf - dry mass [TO:0001014]. + dry mass [TO:0001014].;The ratio of the mass of water soluble starch in a + leaf to leaf dry mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -1089,7 +1209,9 @@ traits: in a leaf [PO:0025034] to leaf area [PATO:0001323], where 'sugar' refers to an informal grouping of carbohydrates [CHEBI:16646] that are soluble in [PATO:0001537] water [CHEBI:15377], including both monosaccharides [CHEBI:35381] and disaccharides - [CHEBI:36233]. + [CHEBI:36233].;The ratio of the mass of sugar in a leaf to leaf area, where + 'sugar' refers to an informal grouping of carbohydrates that are soluble in + water, including both monosaccharides and disaccharides. type: numeric units: g/m2 allowed_values_min: 0.1 @@ -1101,7 +1223,9 @@ traits: in a leaf [PO:0025034] to leaf dry mass [TO:0001014], where 'sugar' refers to an informal grouping of carbohydrates [CHEBI:16646] that are soluble in [PATO:0001537] water [CHEBI:15377], including both monosaccharides [CHEBI:35381] - and disaccharides [CHEBI:36233]. + and disaccharides [CHEBI:36233].;The ratio of the mass of sugar in a leaf + to leaf dry mass, where 'sugar' refers to an informal grouping of carbohydrates + that are soluble in water, including both monosaccharides and disaccharides. type: numeric units: mg/g allowed_values_min: 1.0 @@ -1111,7 +1235,8 @@ traits: label: Leaf soluble protein content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of water [CHEBI:15377] soluble [PATO:0001537] protein [CHEBI:36080] in a leaf [PO:0025034] to leaf - area [PATO:0001323]. + area [PATO:0001323].;The ratio of the mass of water soluble protein in a leaf + to leaf area. type: numeric units: g/m2 allowed_values_min: 0.1 @@ -1121,7 +1246,8 @@ traits: label: Leaf insoluble protein content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of water [CHEBI:15377] insoluble [PATO:0001538] protein [CHEBI:36080] in a leaf [PO:0025034] to leaf - area [PATO:0001323]. + area [PATO:0001323].;The ratio of the mass of water insoluble protein in a + leaf to leaf area. type: numeric units: g/m2 allowed_values_min: 0.1 @@ -1130,7 +1256,8 @@ traits: leaf_lignin_per_dry_mass: label: Leaf lignin content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of lignin [CHEBI:6457] - in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio of the mass + of lignin in a leaf to leaf dry mass. type: numeric units: mg/g allowed_values_min: 10.0 @@ -1140,7 +1267,9 @@ traits: label: Total leaf phenolic content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of phenol [CHEBI:33853] in a leaf [PO:0025034] to leaf dry mass [TO:0001014], where phenol content - is measured as gallic acid [CHEBI:30778] equivalents. + is measured as gallic acid [CHEBI:30778] equivalents.;The ratio of the mass + of phenol in a leaf to leaf dry mass, where phenol content is measured as + gallic acid equivalents. type: numeric units: mg/g allowed_values_min: 1.0 @@ -1150,7 +1279,8 @@ traits: label: Leaf tannin content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of tannins [CHEBI:26848] (a class of polyphenols [CHEBI:26195]) in a leaf [PO:0025034] - to leaf dry mass [TO:0001014]. + to leaf dry mass [TO:0001014].;The ratio of the mass of tannins (a class of + polyphenols) in a leaf to leaf dry mass. comments: Tannins are a specific class of polyphenolic compounds found in plants. type: numeric units: mg/g @@ -1160,7 +1290,8 @@ traits: leaf_carotenoid_per_area: label: Leaf carotenoid content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carotenoids - [CHEBI:23044] in a leaf [PO:0025034] to leaf area [PATO:0001323]. + [CHEBI:23044] in a leaf [PO:0025034] to leaf area [PATO:0001323].;The ratio + of the mass of carotenoids in a leaf to leaf area. type: numeric units: umol/m2 allowed_values_min: 10.0 @@ -1169,7 +1300,8 @@ traits: leaf_carotenoid_per_dry_mass: label: Leaf carotenoid content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of carotenoids - [CHEBI:23044] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [CHEBI:23044] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of carotenoids in a leaf to leaf dry mass. type: numeric units: mmol/kg allowed_values_min: 0.1 @@ -1180,7 +1312,8 @@ traits: description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorophyll [CHEBI:28966] in a leaf [PO:0025034] to leaf area [PATO:0001323], where chlorophyll content is the sum of chlorophyll a [CHEBI:18230] and chlorophyll b [CHEBI:27888] - content. + content.;The ratio of the mass of chlorophyll in a leaf to leaf area, where + chlorophyll content is the sum of chlorophyll a and chlorophyll b content. type: numeric units: umol/m2 allowed_values_min: 10.0 @@ -1192,7 +1325,9 @@ traits: description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorophyll [CHEBI:28966] in a leaf [PO:0025034] to leaf dry mass [TO:0001014], where chlorophyll content is the sum of chlorophyll a [CHEBI:18230] and chlorophyll - b [CHEBI:27888] content. + b [CHEBI:27888] content.;The ratio of the mass of chlorophyll in a leaf to + leaf dry mass, where chlorophyll content is the sum of chlorophyll a and chlorophyll + b content. type: numeric units: mmol/kg allowed_values_min: 0.1 @@ -1201,7 +1336,8 @@ traits: leaf_chlorophyll_A_per_area: label: Leaf chlorophyll A content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorophyll - a [CHEBI:18230] in a leaf [PO:0025034] to leaf area [PATO:0001323]. + a [CHEBI:18230] in a leaf [PO:0025034] to leaf area [PATO:0001323].;The ratio + of the mass of chlorophyll a in a leaf to leaf area. type: numeric units: umol/m2 allowed_values_min: 50.0 @@ -1210,7 +1346,8 @@ traits: leaf_chlorophyll_A_per_dry_mass: label: Leaf chlorophyll A content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorophyll - a [CHEBI:18230] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + a [CHEBI:18230] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The + ratio of the mass of chlorophyll a in a leaf to leaf dry mass. type: numeric units: mmol/kg allowed_values_min: 0.1 @@ -1219,7 +1356,8 @@ traits: leaf_chlorophyll_B_per_area: label: Leaf chlorophyll B content per unit leaf area description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorophyll - b [CHEBI:27888] in a leaf [PO:0025034] to leaf area [PATO:0001323]. + b [CHEBI:27888] in a leaf [PO:0025034] to leaf area [PATO:0001323].;The ratio + of the mass of chlorophyll b in a leaf to leaf area. type: numeric units: umol/m2 allowed_values_min: 10.0 @@ -1228,7 +1366,8 @@ traits: leaf_chlorophyll_B_per_dry_mass: label: Leaf chlorophyll B content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorophyll - b [CHEBI:27888] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + b [CHEBI:27888] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The + ratio of the mass of chlorophyll b in a leaf to leaf dry mass. type: numeric units: mmol/kg allowed_values_min: 0.01 @@ -1238,7 +1377,8 @@ traits: label: Ratio of leaf chlorophyll A content to leaf chlorophyll B content description: The ratio [PATO:0001470] of the mass [PATO:0000125] of chlorophyll a [CHEBI:18230] in a leaf [PO:0025034] to the mass of chlorophyll b [CHEBI:27888] - in the leaf. + in the leaf.;The ratio of the mass of chlorophyll a in a leaf to the mass + of chlorophyll b in the leaf. type: numeric units: umol/umol allowed_values_min: 0.1 @@ -1247,7 +1387,8 @@ traits: leaf_rubisco_per_leaf_dry_mass: label: Leaf rubisco content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of rubisco - [MESH:D012273] in a leaf [PO:0025034] to leaf dry mass [TO:0001014]. + [MESH:D012273] in a leaf [PO:0025034] to leaf dry mass [TO:0001014].;The ratio + of the mass of rubisco in a leaf to leaf dry mass. comments: This trait is most commonly measured on leaf tissue. If the Rubisco concentration of a different tissue is measured, this should be explicitly noted in the methods or as a method context. @@ -1260,6 +1401,7 @@ traits: label: Stem soluble starch content per unit stem dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of water [CHEBI:15377] soluble [PATO:0001537] starch [CHEBI:28017] in a stem [PO:0009047] to stem + dry mass.;The ratio of the mass of water soluble starch in a stem to stem dry mass. type: numeric units: mg/g @@ -1272,7 +1414,9 @@ traits: in a stem [PO:0009047] to stem dry mass, where 'sugar' refers to an informal grouping of carbohydrates [CHEBI:16646] that are soluble in [PATO:0001537] water [CHEBI:15377], including both monosaccharides [CHEBI:35381] and disaccharides - [CHEBI:36233]. + [CHEBI:36233].;The ratio of the mass of sugar in a stem to stem dry mass, + where 'sugar' refers to an informal grouping of carbohydrates that are soluble + in water, including both monosaccharides and disaccharides. type: numeric units: mg/g allowed_values_min: 1.0 @@ -1281,7 +1425,8 @@ traits: bark_cellulose_per_dry_mass: label: Bark cellulose content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of cellulose - [CHEBI:62967] in bark [PO:0004518] to bark dry mass. + [CHEBI:62967] in bark [PO:0004518] to bark dry mass.;The ratio of the mass + of cellulose in bark to bark dry mass. type: numeric units: mg/mg allowed_values_min: 0.1 @@ -1290,7 +1435,8 @@ traits: bark_lignin_per_dry_mass: label: Bark lignin content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of lignin [CHEBI:6457] - in bark [PO:0004518] to bark dry mass. + in bark [PO:0004518] to bark dry mass.;The ratio of the mass of lignin in + bark to bark dry mass. type: numeric units: mg/mg allowed_values_min: 0.01 @@ -1300,7 +1446,7 @@ traits: label: Bark tannin content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of tannins [CHEBI:26848] (polyphenols [CHEBI:26195]) in bark [PO:0004518] to bark dry - mass. + mass.;The ratio of the mass of tannins (polyphenols) in bark to bark dry mass. comments: Tannins are a specific class of polyphenolic compounds found in plants. type: numeric units: mg/mg @@ -1311,7 +1457,8 @@ traits: label: Root soluble starch content per unit root dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of water [CHEBI:15377] soluble [PATO:0001537] starch [CHEBI:28017] in roots [PO:0009005] to root - dry mass. + dry mass.;The ratio of the mass of water soluble starch in roots to root dry + mass. type: numeric units: mg/g allowed_values_min: 0.1 @@ -1323,7 +1470,9 @@ traits: in roots [PO:0009005] to root dry mass, where 'sugar' refers to an informal grouping of carbohydrates [CHEBI:16646] that are soluble in [PATO:0001537] water [CHEBI:15377], including both monosaccharides [CHEBI:35381] and disaccharides - [CHEBI:36233]. + [CHEBI:36233].;The ratio of the mass of sugar in roots to root dry mass, where + 'sugar' refers to an informal grouping of carbohydrates that are soluble in + water, including both monosaccharides and disaccharides. type: numeric units: mg/g allowed_values_min: 1.0 @@ -1332,7 +1481,8 @@ traits: seed_protein_per_seed_dry_mass: label: Seed protein content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of protein - [CHEBI:36080] in a seed [PO:0009010] to seed dry mass [TO:0000181]. + [CHEBI:36080] in a seed [PO:0009010] to seed dry mass [TO:0000181].;The ratio + of the mass of protein in a seed to seed dry mass. comments: It is best practice for the denominator to be seed dry mass. If data are reported on a `per seed fresh mass` basis, this should be explicitly noted in the methods or as a method context. @@ -1344,7 +1494,8 @@ traits: seed_oil_per_seed_dry_mass: label: Seed oil content per unit seed dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of lipids [CHEBI:18059] - in a seed [PO:0009010] to seed dry mass [TO:0000181]. + in a seed [PO:0009010] to seed dry mass [TO:0000181].;The ratio of the mass + of lipids in a seed to seed dry mass. comments: It is best practice for the denominator to be seed dry mass. If data are reported on a `per seed fresh mass` basis, this should be explicitly noted in the methods or as a method context. @@ -1357,7 +1508,9 @@ traits: label: Leaf ash content per unit leaf dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of leaf [PO:0025034] ash [ENVO:02000090] remaining after a combustion process [ENVO:01000839] to - the leaf dry mass before the combustion process. + the leaf dry mass before the combustion process.;The ratio of the mass of + leaf ash remaining after a combustion process to the leaf dry mass before + the combustion process. comments: Includes measurements on leaf analogs, including cladodes and phylloclades. type: numeric units: g/g @@ -1368,7 +1521,9 @@ traits: label: Bark ash content per unit bark dry mass description: The ratio [PATO:0001470] of the mass [PATO:0000125] of bark [PO:0004518] ash [ENVO:02000090] remaining after a combustion process [ENVO:01000839] to - the bark dry mass before the combustion process. + the bark dry mass before the combustion process.;The ratio of the mass of + bark ash remaining after a combustion process to the bark dry mass before + the combustion process. type: numeric units: g/g allowed_values_min: 0.0001 @@ -1377,7 +1532,7 @@ traits: bark_delta13C: label: Bark stable carbon isotope composition (delta13C) description: Carbon stable isotope ratio [ECSO:00001142], d13C [ECSO:00000669], - of bark [PO:0004518]. + of bark [PO:0004518].;Carbon stable isotope ratio, d13C, of bark. comments: delta13C is calculated as the ratio of, 13C/12C in a sample to 13C/12C in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A more negative value for delta13C indicates the @@ -1390,7 +1545,7 @@ traits: leaf_delta13C: label: Leaf stable carbon isotope composition (delta13C) description: Carbon stable isotope ratio [ECSO:00001142], d13C [ECSO:00000669], - of leaves [PO:0025034]. + of leaves [PO:0025034].;Carbon stable isotope ratio, d13C, of leaves. comments: delta13C is calculated as the ratio of, 13C/12C in a sample to 13C/12C in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A more negative value for delta13C indicates the @@ -1403,7 +1558,7 @@ traits: stem_delta13C: label: Stem stable carbon isotope composition (delta13C) description: Carbon stable isotope ratio [ECSO:00001142], d13C [ECSO:00000669], - of stems [PO:0009047]. + of stems [PO:0009047].;Carbon stable isotope ratio, d13C, of stems. comments: delta13C is calculated as the ratio of, 13C/12C in a sample to 13C/12C in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A more negative value for delta13C indicates the @@ -1416,7 +1571,7 @@ traits: root_delta13C: label: Root stable carbon isotope composition (delta13C) description: Carbon stable isotope ratio [ECSO:00001142], d13C [ECSO:00000669], - of roots [PO:0009005]. + of roots [PO:0009005].;Carbon stable isotope ratio, d13C, of roots. comments: delta13C is calculated as the ratio of, 13C/12C in a sample to 13C/12C in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A more negative value for delta13C indicates the @@ -1429,7 +1584,7 @@ traits: wood_delta13C: label: Wood stable carbon isotope composition (delta13C) description: Carbon stable isotope ratio [ECSO:00001142], d13C [ECSO:00000669], - of wood [NCIT:C93062]. + of wood [NCIT:C93062].;Carbon stable isotope ratio, d13C, of wood. comments: delta13C is calculated as the ratio of, 13C/12C in a sample to 13C/12C in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A more negative value for delta13C indicates the @@ -1442,7 +1597,7 @@ traits: bark_delta15N: label: Bark stable nitrogen isotope composition (delta15N) description: Nitrogen stable isotope ratio [ECSO:00001737], d15N [ECSO:00001738], - of bark [PO:0004518]. + of bark [PO:0004518].;Nitrogen stable isotope ratio, d15N, of bark. comments: delta15N is calculated as the ratio of, 15N/14N in a sample to 15N/14N in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta15N indicates the sample @@ -1455,7 +1610,7 @@ traits: leaf_delta15N: label: Leaf stable nitrogen isotope composition (delta15N) description: Nitrogen stable isotope ratio [ECSO:00001737], d15N [ECSO:00001738], - of leaves [PO:0025034]. + of leaves [PO:0025034].;Nitrogen stable isotope ratio, d15N, of leaves. comments: delta15N is calculated as the ratio of, 15N/14N in a sample to 15N/14N in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta15N indicates the sample @@ -1468,7 +1623,7 @@ traits: stem_delta15N: label: Stem stable nitrogen isotope composition (delta15N) description: Nitrogen stable isotope ratio [ECSO:00001737], d15N [ECSO:00001738], - of stems [PO:0009047]. + of stems [PO:0009047].;Nitrogen stable isotope ratio, d15N, of stems. comments: delta15N is calculated as the ratio of, 15N/14N in a sample to 15N/14N in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta15N indicates the sample @@ -1481,7 +1636,7 @@ traits: root_delta15N: label: Root stable nitrogen isotope composition (delta15N) description: Nitrogen stable isotope ratio [ECSO:00001737], d15N [ECSO:00001738], - of roots [PO:0009005]. + of roots [PO:0009005].;Nitrogen stable isotope ratio, d15N, of roots. comments: delta15N is calculated as the ratio of, 15N/14N in a sample to 15N/14N in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta15N indicates the sample @@ -1494,7 +1649,7 @@ traits: wood_delta15N: label: Wood stable nitrogen isotope composition (delta15N) description: Nitrogen stable isotope ratio [ECSO:00001737], d15N [ECSO:00001738], - of wood [NCIT:C93062]. + of wood [NCIT:C93062].;Nitrogen stable isotope ratio, d15N, of wood. comments: delta15N is calculated as the ratio of, 15N/14N in a sample to 15N/14N in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta15N indicates the sample @@ -1507,7 +1662,8 @@ traits: leaf_xylem_delta15N: label: Leaf xylem stable nitrogen isotope composition (delta15N) description: Nitrogen stable isotope ratio [ECSO:00001737], d15N [ECSO:00001738], - of xylem sap [PO:0025539] from leaf [PO:0025034] xylem vessels [PO:0025417]. + of xylem sap [PO:0025539] from leaf [PO:0025034] xylem vessels [PO:0025417].;Nitrogen + stable isotope ratio, d15N, of xylem sap from leaf xylem vessels. comments: delta15N is calculated as the ratio of, 15N/14N in a sample to 15N/14N in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta15N indicates the sample @@ -1520,7 +1676,8 @@ traits: root_xylem_delta15N: label: Root xylem stable nitrogen isotope composition (delta15N) description: Nitrogen stable isotope ratio [ECSO:00001737], d15N [ECSO:00001738], - of xylem sap [PO:0025539] from root [PO:0009005] xylem vessels [PO:0025417]. + of xylem sap [PO:0025539] from root [PO:0009005] xylem vessels [PO:0025417].;Nitrogen + stable isotope ratio, d15N, of xylem sap from root xylem vessels. comments: delta15N is calculated as the ratio of, 15N/14N in a sample to 15N/14N in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta15N indicates the sample @@ -1533,7 +1690,7 @@ traits: leaf_delta18O: label: Leaf stable oxygen isotope composition (delta18O) description: Oxygen stable isotope ratio [ECSO:00001740], d18O [ECSO:00001677], - of leaves [PO:0025034]. + of leaves [PO:0025034].;Oxygen stable isotope ratio, d18O, of leaves. comments: delta18O is calculated as the ratio of, 18O/16O in a sample to 18O/16O in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta18O indicates the sample @@ -1546,7 +1703,8 @@ traits: stem_water_delta18O: label: Stem water stable oxygen isotope composition (delta18O) description: Oxygen stable isotope ratio [ECSO:00001740], d18O [ECSO:00001677], - of water [CHEBI:15377] in stems [PO:0009047]. + of water [CHEBI:15377] in stems [PO:0009047].;Oxygen stable isotope ratio, + d18O, of water in stems. comments: delta18O is calculated as the ratio of, 18O/16O in a sample to 18O/16O in a standard, minus 1. The result is expressed in parts per thousand, commonly referred to as per mille. A lower value for delta18O indicates the sample @@ -2110,7 +2268,7 @@ traits: a distinct point, and a length:width ratio between 2:1 and 3:2. (Synonyms, oval) ensiform: A 2-dimensional shape that is sword-shaped with a pointed tip and - a length:width ratio greater than 12:1 (Synonyms, sword-shaped) + a length:width ratio greater than 12:1. (Synonyms, sword-shaped) falcate: A 2-dimensional sickle-shape, approximately lanceolate to linear and curved on one side. (Synonyms, scimitar-shaped, sickle-shaped, falciform, crescent-shaped) @@ -2188,11 +2346,11 @@ traits: or oblanceolate in outline with a long attenuate base, like a spoon. (Synonyms, spoon-shaped, clavate) strap-shaped: A 2-dimensional shape that is strap-shaped with a rounded tip - and a length:width ratio greater than 12:1 + and a length:width ratio greater than 12:1. subulate: A 2-dimensional shape that is awl-shaped, approximately narrowly - oblong to narrowly triangular with a broad base. (Synonyms, awl-shaped). + oblong to narrowly triangular with a broad base. (Synonyms, awl-shaped) terete: A 3-dimensional shape that is a long, narrow cylinder approximately - circular in cross-section. Terete leaves often taper toward the tip. (Synonym, + circular in cross-section. Terete leaves often taper toward the tip. (Synonyms, cylindrical) triangular: A 2-dimensional shape that is triangular to wedge-shaped, with a length:width ratio 2:1 to 3:2 and the petiole attaching near the widest @@ -2281,11 +2439,11 @@ traits: allowed_values_levels: flat: Leaf lamina, including margins, is a 2-dimensional plane. [PATO:0000407] involute: Leaf margins along the side of the leaf are rolled upward, such - that the margin of the adaxial (upper) leaf surface is rolled inward. (Synonym, + that the margin of the adaxial (upper) leaf surface is rolled inward. (Synonyms, inrolled, incurved) revolute: Leaf margins along the side of the leaf are rolled under or downward, such that the margin of the abaxial (lower) leaf surface is rolled inward. - [PATO:0001963] (Synonym, recurved) + [PATO:0001963] (Synonyms, recurved) undulate: Leaf margins are wavy in their 2-dimensional plane. (Synonyms, wavy, rippled, sinuate) entity_URI: https://w3id.org/APD/traits/trait_0011314 @@ -2403,11 +2561,11 @@ traits: upward along the central axis, such that the upper leaf lamina surface is concave. conduplicate: A longitudinal posture term indicating the leaf lamina is folded - upward along the central axis. (Synonym, folded) + upward along the central axis. (Synonyms, folded) convex: A longitudinal posture term indicating the leaf lamina is curved downward along the central axis, such that the lower leaf lamina surface is concave. - (Synonym, concavoconvex, planoconvex) - convolute: Leaf lamina is contorted. (Synonym, twisted) + (Synonyms, concavoconvex, planoconvex) + convolute: Leaf lamina is contorted. (Synonyms, twisted) flat: The leaf lamina is a 2-dimensional plane. incurved: Leaf tip is curved upward. involute: A longitudinal posture term indicating the outer portions of the @@ -2417,7 +2575,7 @@ traits: revolute: A longitudinal posture term indicating the outer portions of the leaf lamina are rolled outward or downward. undulate: The leaf lamina surface is rippled or wavy in its 2-dimensional - plane. [PATO:0000967] (Synonyms, wavy, rippled, sinuate) + plane. [PATO:0000967] (Synonyms, wavy, rippled, sinuate) entity_URI: https://w3id.org/APD/traits/trait_0011319 leaf_glaucousness: label: Leaf glaucousness @@ -2533,15 +2691,15 @@ traits: the plant (a rosette), toward the top of the plant, toward the end of branches, or in distinct tuft (fascicles), but more information is not provided. clustered_basal: When leaves are clustered or crowded to the base of the stem, - arranged in a rosette or other basal clustering. (Synonym, rosette) + arranged in a rosette or other basal clustering. (Synonyms, rosette) crowded: When internode length varies considerably along a stem, such that - leaves appear crowded or tufted. (Synonym, congested) + leaves appear crowded or tufted. (Synonyms, congested) decussate: When sequential pairs of opposite leaves attach at right angles to the pair above or below. distichous: When alternate or opposite leaves are arranged in two opposite rows. fasciculate: A tight bundle or cluster of leaves attaches to the stem in a - single location, generally due to the shortening of internodes. (Synonym, + single location, generally due to the shortening of internodes. (Synonyms, tufted) imbricate: When leaves lay tightly against the stem and are overlapping. rosette: When leaves radiate from a central point at or near ground level. @@ -3349,7 +3507,7 @@ traits: label: Seed accessory cost mass description: A reproductive shoot system [PO:0025082] biomass allocation [EnvThes:21360] trait which is the sum of the dry [PATO:0001824] mass [PATO:0000125] of all - flower buds [PO:0000056], flowers [PO:0009046], fruits [PO:0009001], aborted + flower buds [PO:0000055], flowers [PO:0009046], fruits [PO:0009001], aborted seeds, and dispersal [EnvThes:21038] tissues produced during the developmental process involved in reproduction [GO:0003006], but excludes mature [PATO:0001701] seed [PO:0009010] dry mass.;The mass of seed accessory costs, which is the @@ -3361,6 +3519,45 @@ traits: allowed_values_min: 0.01 allowed_values_max: 10000.0 entity_URI: https://w3id.org/APD/traits/trait_0012222 + bud_length: + label: Bud length + description: A floral organ morphology trait [TO:0000862] which is the length + [PATO:0000122] of the bud [PO:0000055] from the base of the receptable [PO:0009064] + or the base of an inferior ovary [PO:0009072] to the tip of the bud.;Linear + dimension from the base to the apex of a bud, even if this is not the longest + dimension. + type: numeric + units: cm + allowed_values_min: 0.01 + allowed_values_max: 200.0 + entity_URI: https://w3id.org/APD/traits/trait_0012301 + bud_width: + label: Bud width + description: A floral organ morphology trait [TO:0000862] which is the width + [PATO:0000921] of the bud [PO:0000055] from the base of the receptable [PO:0009064] + or the base of an inferior ovary [PO:0009072] to the tip of the bud. Width + is the greatest linear dimension [PATO:0001708] perpendicular to [PATO:0002434] + to the bud length [PATO:0000122];Greatest linear width dimension of a bud, + sometimes referred to as 'diameter' in buds where the width and height are + identical; orthogonal to the bud length, the base-to-apex dimension. + type: numeric + units: cm + allowed_values_min: 0.01 + allowed_values_max: 200.0 + entity_URI: https://w3id.org/APD/traits/trait_0012302 + buds_per_inflorescence: + label: Buds per inflorescence + description: A floral organ morphology trait [TO:0000862] which is the count + [NCIT:C25463] of buds [PO:0000055] in an inflorescence [PO:0009049], where + an inflorescence can be either a single cluster of flowers or the entire reproductive + shoot system [PO:0025082].;The count of buds in an inflorescence, where an + inflorescence can be either a single cluster of flowers or the entire reproductive + shoot system. + type: numeric + units: '{count}/{count}' + allowed_values_min: 1.0 + allowed_values_max: 1000.0 + entity_URI: https://w3id.org/APD/traits/trait_0012351 flower_androecium_structural_merism: label: Number of androecium parts in each whorl (Androecium structural merism) description: An androecium morphology trait [TO:0000994] which is the total @@ -3562,28 +3759,7 @@ traits: red: Perianth colour is red. white: Perianth colour is white. yellow: Perianth colour is yellow. - entity_URI: https://w3id.org/APD/traits/trait_0012418 - bud_length: - label: Bud length - description: The length of the bud. - type: numeric - units: cm - allowed_values_min: 0.01 - allowed_values_max: 200.0 - bud_width: - label: Bud width - description: The width of the bud. - type: numeric - units: cm - allowed_values_min: 0.01 - allowed_values_max: 200.0 - buds_per_inflorescence: - label: Buds per inflorescence - description: The number of buds per inflorescence. - type: numeric - units: '{count}/{count}' - allowed_values_min: 1 - allowed_values_max: 1000 + entity_URI: https://w3id.org/APD/traits/trait_0012418 flower_length: label: Flower length description: A floral organ morphology trait [TO:0000862] which is the length @@ -4273,7 +4449,7 @@ traits: just a half-carpel.) multiple_fruit: A fruit composed of several fruitlets developing from a single flower (e.g. raspberries, magnolias); fruits developing from more than one - flower are included under compound (aggregate) fruits. (Synonym, apocarp) + flower are included under compound (aggregate) fruits. (Synonyms, apocarp) nut: A simple, dry, indehiscent fruit with a single seed and a hard pericarp. nutlet: A diminutive of nut, referring to a simple, dry, indehiscent structure with a single seed that might be an entire fruit (nut; monocarp) or a portion @@ -4537,7 +4713,7 @@ traits: and circular in cross section, where the length dimension is much longer than the width/height dimensions. Term as used in AusTraits includes specific shapes club-shaped (clavate/obclavate) and tear-shaped (lachrimiform). (Synonyms, - lachrimiform; tear-shaped; lachrymiform; clavate; obclavate; club-shaped) + lachrimiform, tear-shaped, lachrymiform, clavate; obclavate, club-shaped) ovoid_flattened: A 3-dimensional shape that is egg-shaped in long section and laterally compressed/flattened such that is non-circular in cross section. polyhedral: A 3-dimensional shape with distinct, fairly flat faces and edges; @@ -4598,7 +4774,7 @@ traits: (Synonyms, scabrous) scaly: Seed surface rough with loose scales differing in direction or not parallel in direction. (Synonyms, scurfy, squarrose) - smooth: Seed surface smooth, lacking texture. (Synonym, glabrous) + smooth: Seed surface smooth, lacking texture. (Synonyms, glabrous) spiny: Seed surface with spines. (Synonyms, echinulate) wrinkled: Seed surface with a wrinkled, rugose texture. (Synonyms, rugose, rugulose, bullate) @@ -4896,7 +5072,7 @@ traits: description: A vascular tissue morphology trait [TO:0000470] which is the ratio [PATO:0001470] of a stem' [PO:0009047] average xylem vessel [PO:0025417] diameter [PATO:0001334] to the stem's xylem vessel count density [ECSO:00001160].;The - ratio of a stem�s average xylem vessel diameter to the stem�s xylem vessel + ratio of a stem's average xylem vessel diameter to the stem's xylem vessel density, an index of sap conductance and xylem vessel susceptibility to vessel cavitation. type: numeric @@ -6262,48 +6438,52 @@ traits: allowed_values_max: 700.0 entity_URI: https://w3id.org/APD/traits/trait_0021034 leaf_hydraulic_vulnerability: - label: Leaf xylem pressure, 50% lost conductance + label: Leaf xylem pressure, 50% lost conductance (P50) description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) in leaf [PO:0025034] xylem vessels [PO:0025417] at which the hydraulic conductance [EnvThes:22133] has declined by 50% from the mean maximum [NCIT:C25564] rate - [PATO:0000161].;Leaf xylem water pressure at which leaf hydraulic conductance - has declined by 50% from the mean maximum rate of hydraulic conductance. + [PATO:0000161].;A measure of leaf hydraulic vulnerability, which is the leaf + xylem water pressure at which leaf hydraulic conductance has declined by 50% + from the mean maximum rate of hydraulic conductance. type: numeric units: MPa allowed_values_min: -40.0 allowed_values_max: 0.0 entity_URI: https://w3id.org/APD/traits/trait_0021050 water_potential_12percent_lost_conductivity: - label: Stem xylem pressure, 12% lost conductivity + label: Stem xylem pressure, 12% lost conductivity (P12) description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) in stem [PO:0009047] xylem vessels [PO:0025417] at which the hydraulic conductivity [EnvThes:22133] has declined by 12% from the mean maximum [NCIT:C25564] rate - [PATO:0000161].;Stem xylem water pressure value at which stem hydraulic conductivity - has declined by 12% from the mean maximum rate of hydraulic conductivity. + [PATO:0000161].;A measure of stem hydraulic vulnerability, which is the stem + xylem water pressure value at which stem hydraulic conductivity has declined + by 12% from the mean maximum rate of hydraulic conductivity. type: numeric units: MPa allowed_values_min: -20.0 allowed_values_max: 0.0 entity_URI: https://w3id.org/APD/traits/trait_0021051 water_potential_50percent_lost_conductivity: - label: Stem xylem pressure, 50% lost conductivity + label: Stem xylem pressure, 50% lost conductivity (P50) description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) in stem [PO:0009047] xylem vessels [PO:0025417] at which the hydraulic conductivity [EnvThes:22133] has declined by 50% from the mean maximum [NCIT:C25564] rate - [PATO:0000161].;Stem xylem water pressure value at which stem hydraulic conductivity - has declined by 50% from the mean maximum rate of hydraulic conductivity. + [PATO:0000161].;A measure of stem hydraulic vulnerability, which is the stem + xylem water pressure value at which stem hydraulic conductivity has declined + by 50% from the mean maximum rate of hydraulic conductivity. type: numeric units: MPa allowed_values_min: -20.0 allowed_values_max: 0.0 entity_URI: https://w3id.org/APD/traits/trait_0021052 water_potential_88percent_lost_conductivity: - label: Stem xylem pressure, 88% lost conductivity + label: Stem xylem pressure, 88% lost conductivity (P88) description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) in stem [PO:0009047] xylem vessels [PO:0025417] at which the hydraulic conductivity [EnvThes:22133] has declined by 88% from the mean maximum [NCIT:C25564] rate - [PATO:0000161].;Stem xylem water pressure value at which stem hydraulic conductivity - has declined by 88% from the mean maximum rate of hydraulic conductivity. + [PATO:0000161].;A measure of stem hydraulic vulnerability, which is the stem + xylem water pressure value at which stem hydraulic conductivity has declined + by 88% from the mean maximum rate of hydraulic conductivity. type: numeric units: MPa allowed_values_min: -20.0 @@ -6447,36 +6627,96 @@ traits: allowed_values_max: 1.0 entity_URI: https://w3id.org/APD/traits/trait_0021061 root_water_potential_50percent_lost_conductivity: - label: Root xylem pressure, 50% lost conductivity + label: Root xylem pressure, 50% lost conductivity (P50) description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) in root [PO:0009005] xylem vessels [PO:0025417] at which the hydraulic conductivity [EnvThes:22133] has declined by 50% from the mean maximum [NCIT:C25564] rate - [PATO:0000161].;Root xylem water pressure value at which root hydraulic conductivity - has declined by 50% from the mean maximum rate of hydraulic conductivity. + [PATO:0000161].;A measure of root hydraulic vulnerability, which is the root + xylem water pressure value at which root hydraulic conductivity has declined + by 50% from the mean maximum rate of hydraulic conductivity. type: numeric units: MPa allowed_values_min: -20.0 allowed_values_max: 0.0 entity_URI: https://w3id.org/APD/traits/trait_0021062 + root_water_potential_12percent_lost_conductivity: + label: Root xylem pressure, 12% lost conductivity (P12) + description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) + in root [PO:0009005] xylem vessels [PO:0025417] at which the hydraulic conductivity + [EnvThes:22133] has declined by 12% from the mean maximum [NCIT:C25564] rate + [PATO:0000161].;A measure of root hydraulic vulnerability, which is the root + xylem water pressure value at which root hydraulic conductivity has declined + by 12% from the mean maximum rate of hydraulic conductivity. + type: numeric + units: MPa + allowed_values_min: -20.0 + allowed_values_max: 0.0 + entity_URI: https://w3id.org/APD/traits/trait_0021063 + root_water_potential_88percent_lost_conductivity: + label: Root xylem pressure, 88% lost conductivity (P88) + description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) + in root [PO:0009005] xylem vessels [PO:0025417] at which the hydraulic conductivity + [EnvThes:22133] has declined by 88% from the mean maximum [NCIT:C25564] rate + [PATO:0000161].;A measure of root hydraulic vulnerability, which is the root + xylem water pressure value at which root hydraulic conductivity has declined + by 88% from the mean maximum rate of hydraulic conductivity. + type: numeric + units: MPa + allowed_values_min: -20.0 + allowed_values_max: 0.0 + entity_URI: https://w3id.org/APD/traits/trait_0021064 + leaf_water_potential_12percent_lost_conductivity: + label: Leaf xylem pressure, 12% lost conductance (P12) + description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) in + leaf [PO:0025034] xylem vessels [PO:0025417] at which the hydraulic conductance + [EnvThes:22133] has declined by 12% from the mean maximum [NCIT:C25564] rate + [PATO:0000161].;A measure of leaf hydraulic vulnerability, which is the leaf + xylem water pressure at which leaf hydraulic conductance has declined by 12% + from the mean maximum rate of hydraulic conductance. + type: numeric + units: MPa + allowed_values_min: -40.0 + allowed_values_max: 0.0 + entity_URI: https://w3id.org/APD/traits/trait_0021065 + leaf_water_potential_88percent_lost_conductivity: + label: Leaf xylem pressure, 88% lost conductance (P88) + description: The tension [PATO:0002284] (water pressure) (water potential [EnvThes:22311]) in + leaf [PO:0025034] xylem vessels [PO:0025417] at which the hydraulic conductance + [EnvThes:22133] has declined by 88% from the mean maximum [NCIT:C25564] rate + [PATO:0000161].;A measure of leaf hydraulic vulnerability, which is the leaf + xylem water pressure at which leaf hydraulic conductance has declined by 88% + from the mean maximum rate of hydraulic conductance. + type: numeric + units: MPa + allowed_values_min: -40.0 + allowed_values_max: 0.0 + entity_URI: https://w3id.org/APD/traits/trait_0021066 leaf_N_resorption: - label: Leaf nitrogen resorption + label: Leaf nitrogen resorption efficiency description: A leaf [PO:0025034] nutrient recycling trait which is one minus the ratio [PATO:0001470] of leaf nitrogen [CHEBI:25555] content in a senescent [PATO:0001487] leaf (leaf litter [ENVO:01000628]) to leaf nitrogen content - in a live [PATO:0001421] leaf, indicating how much nitrogen is resorbed [NCIT:C93204] - from the senescent leaf before it is shed. + in a live [PATO:0001421] leaf, indicating what proportion of nitrogen is resorbed + [NCIT:C93204] from the senescent leaf before it is shed.;A leaf nutrient recycling + trait which is one minus the ratio of leaf nitrogen content in a senescent + leaf (leaf litter) to leaf nitrogen content in a live leaf, indicating what + proportion of nitrogen is resorbed from the senescent leaf before it is shed. type: numeric units: mg/mg allowed_values_min: -1.1 allowed_values_max: 1.0 entity_URI: https://w3id.org/APD/traits/trait_0022012 leaf_P_resorption: - label: Leaf phosphorus resorption + label: Leaf phosphorus resorption efficiency description: A leaf [PO:0025034] nutrient recycling trait which is one minus the ratio [PATO:0001470] of leaf phosphorus [CHEBI:28659] content in a senescent [PATO:0001487] leaf (leaf litter [ENVO:01000628]) to leaf phosphorus content - in a live [PATO:0001421] leaf, indicating how much phosphorus is resorbed - [NCIT:C93204] from the senescent leaf before it is shed. + in a live [PATO:0001421] leaf, indicating what proportion of phosphorus is + resorbed [NCIT:C93204] from the senescent leaf before it is shed.;A leaf nutrient + recycling trait which is one minus the ratio of leaf phosphorus content in + a senescent leaf (leaf litter) to leaf phosphorus content in a live leaf, + indicating what proportion of phosphorus is resorbed from the senescent leaf + before it is shed. type: numeric units: mg/mg allowed_values_min: -1.1 @@ -6520,7 +6760,8 @@ traits: tendrils, and/or adventitious roots to climb; the climbing mechanisms used by a taxon are captured under the trait `plant_climbing_mechanism`. (Synonyms, liana) - fern: A taxonomic grouping; ferns are vascular plants that reproduce via spores. + fern: A taxonomic grouping that includes acaulescent ferns; ferns are vascular + plants that reproduce via spores and have neither seeds nor flowers. geophyte: Subcategory of herb, specifically referring to plants that survive the winter/dry season as an organ (rhizome, bulb, corm, or tuber) buried in dry soil, with all leaves dying back each year. @@ -6543,7 +6784,7 @@ traits: mounds and these are considered a distinctive and uniquely Australian growth form. lycophyte: A taxonomic grouping that includes quillworts, clubmosses, and - selaginella. + spike mosses. mallee: Refers to Eucalyptus species which are small trees that form a large lignotuber. They have multiple stems arising at or near ground level and regenerate from the lignotuber following fire. @@ -6741,9 +6982,11 @@ traits: their host plant. The trait `root_structures` includes specialised root structures type: categorical allowed_values_levels: + carnivorous: Plant that acquires some or most of its nutrients from animals + or protozoa. + nutrient_mining: Plant that uses a specialised root structure, such as cluster + roots, to mine nutrients inaccessible to other plant taxa. saprophyte: Plant that acquires nutrients from decaying biomass. - carnivorous: Plant that acquires some or most of its nutrients from animals or protozoa. - nutrient_mining: Plant that uses a specialised root structure, such as cluster roots, to mine nutrients inaccessible to other plant taxa. entity_URI: https://w3id.org/APD/traits/trait_0030017 woodiness: label: Woodiness @@ -6792,8 +7035,8 @@ traits: woody: Plant whose stems produce secondary xylem (true wood). woody_base: Plant where secondary xylem (true wood) is present only at the base of stems. (Synonyms, suffrutescent) - woody_like_inflorescence: Taxa, including monocots and ferns, that produce - thick, stiff, robust lignified inflorescence shoots but are otherwise non-woody. + woody_like_inflorescence: Taxa, including monocots, that produce thick, stiff, + robust lignified inflorescence shoots but are otherwise non-woody. woody_like_stem: Taxa, including monocots and ferns, that produce thick, stiff, robust lignified stems but do not produce secondary xylem. woody_root: Plant that has a woody rootstock but non-woody above-ground stems. @@ -7373,9 +7616,9 @@ traits: description: The environmental conditions [ENVO:01000203] under which a taxon [NCIT:C40098] displays seed [PO:0009010] germination [GO:0009845] and seedling establishment [EnvThes:20410], with trait values reflecting successional changes - to the vegetation community.;The environmental conditions [ENVO:01000203] - under which a taxon's seedlings can establish, with trait values reflecting - successional changes to the vegetation community. + to the vegetation community.;The environmental conditions under which a taxon's + seedlings can establish, with trait values reflecting successional changes + to the vegetation community. comments: The selection of trait values does not distinguish between the ability to establish in intermediate age versus mature vegetation, as this level of detail is rarely provided in datasets. @@ -7758,7 +8001,7 @@ traits: rhizome_woody: A type of continually growing or creeping woody underground stem. root_tuber: A swollen root the stores nutrients, carbohydrates and water. - (Synonym, taproot tuber) + (Synonyms, taproot tuber) stem_tuber: A swollen underground stem that stores nutrients, carbohydrates and water. storage_organ: Plant has a storage organ, but the type is unknown. @@ -7792,7 +8035,7 @@ traits: allowed_values_levels: apical_buds: Plants resprout from above-ground apical meristems. Also termed a caudex. Term refers to palm-like plants with aerial buds that resprout, - including grass trees, palms, tree ferns, and pandanus. (Synonym, aerial + including grass trees, palms, tree ferns, and pandanus. (Synonyms, aerial apical sprouter) basal_buds: Plants resprout from its base, with buds originating from stem tissue (e.g. lignotuber) and root tissue (root crown) not distinguished @@ -7801,13 +8044,13 @@ traits: `basal buds` rather than `basal stem buds` or `lignotuber`. basal_stem_buds: Plants resprout from the base of the stem. Australian plants with basal stem buds usually have a lignotuber, documented in the trait - `storage_organ`. (Synonym, rootstock, lignotuberous resprouter) + `storage_organ`. (Synonyms, rootstock, lignotuberous resprouter) bud-bearing_root: Root buds produce vertical suckers (from root crown) or - adventitious roots. (Synonyms, root-suckering resprouter; adventitious buds) + adventitious roots. (Synonyms, root-suckering resprouter, adventitious buds) epicormic_buds: Plants resprout from the stem or trunk. fleshy_underground_organ: Plants resprouts from buds on a fleshy underground organ that is a taproot tuber, bulb, corm, stem tuber, root tuber, or belowground - caudex. (Synonym, geophyte) + caudex. (Synonyms, geophyte) none: Plants lack regenerative buds. rhizome: Plants resprout from buds on a rhizome, where it is not specified if the rhizome is woody or non-woody. @@ -7855,7 +8098,7 @@ traits: type: categorical allowed_values_levels: fire_killed: Fewer than 30% of plants resprout following a fire with 100% - leaf scorch. (Synonym, fire-sensitive) + leaf scorch. (Synonyms, fire-sensitive) partial_resprouting: Between 30-70% of plants resprout following a fire with 100% leaf scorch. resprouts: More than 70% of plants resprout following a fire with 100% leaf @@ -8402,7 +8645,7 @@ traits: allowed_values_levels: calcicole: Plants are tolerant of basic soils, such as calcareous sands and limestone derived soils. - calcifuge: Plants are intolerant of basic soils (Synonyms, acidophilous). + calcifuge: Plants are intolerant of basic soils. (Synonyms, acidophilous) entity_URI: https://w3id.org/APD/traits/trait_0030817 plant_tolerance_fire: label: Plant fire tolerance strategy diff --git a/scripts/build_traits_yml_from_APD.R b/scripts/build_traits_yml_from_APD.R index f8a7b67b9..305a3275a 100644 --- a/scripts/build_traits_yml_from_APD.R +++ b/scripts/build_traits_yml_from_APD.R @@ -1,5 +1,4 @@ -# XXX need to source APD_traits.csv and APD_categorical_values.csv from APD/data # XXX need to change triple quotes (''') to single quotes ('). During read/write, '{count}/{count}' becomes '''{count}/{count}''' # XXX flowering_time, fruiting_time and recruitment_time are categorical traits but without any set categorical trait values. # XXX Therefore an empty value for allowed_values_levels is created that breaks AusTraits @@ -11,7 +10,7 @@ library(stringr) library(traits.build) -path_APD <- "https://raw.githubusercontent.com/traitecoevo/APD/master/data/" +path_APD <- "https://raw.githubusercontent.com/traitecoevo/APD/master" APD <- read_csv(file.path(path_APD, "APD_traits.csv"), show_col_types = FALSE) %>% @@ -19,24 +18,30 @@ APD <- description = ifelse(is.na(description), description_encoded, paste0(description_encoded, ";", description)), units = ifelse(str_starts(units, fixed("{")), sprintf("'%s'", units),units), Entity_URI = paste0("https://w3id.org/APD/traits/", identifier), - allowed_values_levels = ifelse(type_x == "categorical", "add_in", NA), + trait_type = ifelse(grepl("continuous variable", trait_type), "numeric", "categorical"), + allowed_values_levels = ifelse(trait_type == "categorical", "add_in", NA), ) %>% select(trait, label, description, comments, - type = type_x, + type = trait_type, units, - allowed_values_min = min, - allowed_values_max = max, + allowed_values_min, + allowed_values_max, allowed_values_levels, - entity_URI = Entity_URI + entity_URI = Entity ) %>% arrange(entity_URI) value_levels <- read_csv(file.path(path_APD,"APD_categorical_values.csv"), show_col_types = FALSE) %>% - select(trait_cat = trait_name, - label, + mutate( + description = ifelse(is.na(categorical_trait_synonyms), + categorical_trait_description, + paste0(categorical_trait_description, " (Synonyms, ", categorical_trait_synonyms, ")")) + ) %>% + select(trait_cat = trait, + label = allowed_values_levels, description ) @@ -62,8 +67,7 @@ traits$elements <- all.equal(names(traits$elements), APD$entity_URI) names(traits$elements) <- APD$trait - -# for add categorical traits, add allowable values +# for categorical traits, add allowable values for(trait in names(traits$elements)) { if(traits$elements[[trait]][["type"]] == "categorical") { @@ -81,4 +85,9 @@ for(trait in names(traits$elements)) { } } +# Delete allowed_values_levels for items where no values are available or suitable +for(v in c("recruitment_time", "fruiting_time", "flowering_time")) { + traits$elements[[v]]$allowed_values_levels <- NULL +} + yaml::write_yaml(list(traits = traits), "config/traits.yml")