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genetic-epidemiology

Here are 10 public repositories matching this topic...

RayDebashree / PLACO

A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

meta-analysis statistical-genetics rscript frequentist-methods pleiotropy multiple-traits overlapping-samples cross-phenotype genetic-epidemiology gwas-tools mixture-distributions gwas-summary-statistics genetic-overlap

Updated Mar 26, 2022
R

RayDebashree / metaUSAT

metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.

gwas meta-analysis statistical-genetics genome-analysis summary-statistics multivariate-analysis rscript phewas pleiotropy multiple-studies score-test multiple-traits overlapping-samples cross-phenotype genetic-epidemiology metausat

Updated May 27, 2021
R

corbinq / GAMBIT

Tool for integrative gene-based association analysis using GWAS summary stats

gwas genetic-analysis integrative-analysis functional-annotation twas genetic-epidemiology gene-based gwas-summary-statistics regulatory-elements

Updated Aug 28, 2019
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RayDebashree / GWAStools

A curated list (with links) of useful tools for genome-wide association analysis.

swiss gwas metal meta-analysis gwas-catalog genome-analysis manhattan-plot skat qqplot emmax locuszoom genetic-epidemiology gwas-tools mmlr

Updated Mar 1, 2019

biomguler / G-WASPiper

This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.

gwas genomic-data-analysis genotyping genetic-epidemiology

Updated Feb 3, 2024
R

RayDebashree / mvtests

mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)

gwas statistical-tests statistical-genetics genome-analysis multivariate-analysis multiple-traits cross-phenotype genetic-epidemiology proportional-odds-regression gwas-tools

Updated Apr 4, 2022
R

RayDebashree / USAT

USAT uses a data-adaptive weighted score-based test statistic for testing association of multiple continuous phenotypes with a single genetic marker.

gwas statistical-genetics genome-analysis manova multivariate-analysis rscript pleiotropy usat multiple-phenotypes score-test cross-phenotype genetic-epidemiology

Updated Aug 6, 2019
R

RayDebashree / POM-PS

POM-PS tests for genetic associations of secondary traits from case-control GWAS.

gwas statistical-tests statistical-genetics genome-analysis case-control multiple-traits cross-phenotype genetic-epidemiology secondary-traits propensity-score proportional-odds-regression pomps

Updated Aug 6, 2019
R

RayDebashree / GxE

Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.

meta-analysis statistical-genetics gxe genetic-epidemiology gwas-tools gwas-summary-statistics gene-environment-interaction

Updated May 5, 2022
R

giffordlabcvr / RABV-GLUE-WEB

public interactive website layered on top of RABV-GLUE / NCBI-RABV-GLUE projects.

data-oriented-design reproducible-research open-science epidemiology microbial-genomics comparative-genomics rabies genetic-epidemiology virus-evolution

Updated Jan 24, 2023
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