Trimming customed adaptor sequences

[Ruiqi-CUB]

Hello!

Is it possible to trim the customed adaptors using trimmomatic for exon capture sequencing?
If so, how can I create the adaptor fasta file (sequence header etc.)?

The adapters used are below, "BCBCBCBC" stands for the barcodes.

i7: GATCGGAAGAGCACACGTCTGAACTCCAGTCAC-BCBCBCBC-ATCTCGTATGCCGTCTTCTGCTTG

i5: AATGATACGGCGACCACCGAGATCTACAC-BCBCBCBC-ACACTCTTTCCCTACACGACGCTCTTCCGATCT

Thank you in advance
Best
Ruiqi

[taha-lang]

I want to know the name of this sequence to the adapter CTGTCTCTTATACACATCT for the process of trimming, I tried by the adapter ILLUMINACLIP:TruSeq3-PE-2.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36. But it does not work for all samples.