-
Notifications
You must be signed in to change notification settings - Fork 0
/
rtconfig_defaults.txt
executable file
·95 lines (89 loc) · 3.22 KB
/
rtconfig_defaults.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
% Configuration file for Matlab neurofeedback toolbox
% This is ignored (Matlab comment style)
% You MUST separate parameters and values by tabs (NOT spaces)
[TIMING]
% number of volumes to be analyzed
volumes[n]=69
% delay per volume in seconds (set this to 0 for real experiments where no delay is required)
simul[n]=0
% timeout in seconds
timeout[n]=60
% repetition time in seconds
TR[n]=2
[DATA]
% watch mode (RTExport - Siemens+Weiskopf (Analyize), OnlineExport - Siemens (DICOM), DirectExport - binary (DICOM))
watch_mode[s]=DirectExport
% watch port command (extra command to enable RTExport)
watch_portcommand[s]=xterm -bg black -fg yellow -T "From scanner" -geometry 100x16+0+0 -e /realtime/apps/cburealtime/watchport_scanner.py &
% watch directory (where DICOM files are to be found)
watch_dir[s]=/realtime/scratch/incoming
% transfer directory (where Analyze files are transfered after analysis)
tr_dir[s]=none
% ROI definition mode
roi_def[s]=Nifti
% Target and background ROI files (without extension) and weights
no_roi[n]=1
bg_roi[s]=/imaging/ta02/NFB/sample/vol_6306/roi_data/bg
targ_roi1[s]=/imaging/ta02/NFB/sample/vol_6306/roi_data/sma_l
w_roi1[n]=1
% Flip L/R of ROI-file(s) (0 ... no, 1 ... yes)
flip_lr[n]=1
% Flip slice order of ROI-file(s) (0 ... no, 1 ... yes)
flip_slice[n]=0
% full path to Presentation output IP or file (empty for none)
outfile[s]=172.31.25.14
% output directory
output_dir[s]=/imaging/ta02/NFB/sample/vol_6351/loc_out_data
[REFERENCE]
% reference function type
ref_file[s]=/imaging/ta02/NFB/sample/Session_Paradigm.par
% using MVPC
mv_MVPC[n]=0
% Training directory
mv_TrainData[s]=D:\tauer\NFB\vol_4728\localizer
% Training reference directory (TBV out)
mv_TrainRef[s]=D:\tauer\NFB\vol_4728\localizer_out
% MAT-file with the Trained Model
mv_Train[s]=D:\tauer\NFB\vol_4728\MVPC.mat
% Model: NN, SVM
mv_Model[s]=SVM
% Using Percent Signal Change
mv_Percent[n]=1
% Using Background: Not - 0, ROI to substract - 1, Voxels - 2
mv_bg[n]=2
[PREPROCESS]
% motion correction: No - 0, Yes (SPM Realign) - 1
moco_yn[n]=1
moco_ref[s]=/imaging/ta02/NFB/sample/vol_6306/loc/Analyze00001.hdr
% need for motion corrected files: Yes - 0, No - 1
moco_del[n]=1
% Gaussian spatial smoothing in mm (0 for none)
smooth[n]=0
% Low-pass filter the mean time series (0 ... none, 1 ... simple weighting of current and 2 previous timepoints)
lp_filter[n]=0
[FEEDBACK]
% method: Linear - 1, Breakpoints - 2
method[n]=2
% shaping: 2-up-1-down
shaping_yn[n]=0
% max. positive target signal change (in percent)
max_pos[n]=2
% max. negative target signal change (in percent)
max_neg[n]=-2
% use brakepoints or not
break_yn[n]=1
% percental chanes (in % signal) to reach the higher rise
break_low[n]=0.25
% percental chanes (in % signal) to reach the slower rise in the extreme part
break_high[n]=1.5
% ratio of the middle part to the whole slope
sl_middle[n]=0.05
% ratio of one extremity to the whole slope
sl_extremity[n]=0.1
[MISC]
% plot type (no; diff ... plot difference between ROIs; raw ... plot the raw signal intensity in target and background ROI)
plot_type[s]=raw
% if set to 0, program will exit just before the first volume is being read (this is usefull for checking the config file prior to an experiment)
run[n]=1
% run evaluation after experiment?
eval[n]=1