diff --git a/src/MSDIAL5/MsdialCore/Parameter/ParameterBase.cs b/src/MSDIAL5/MsdialCore/Parameter/ParameterBase.cs index 7f40291f2..b0b1c0f39 100644 --- a/src/MSDIAL5/MsdialCore/Parameter/ParameterBase.cs +++ b/src/MSDIAL5/MsdialCore/Parameter/ParameterBase.cs @@ -1148,7 +1148,7 @@ public class AlignmentBaseParameter { [Key(3)] public float SpectrumSimilarityAlignmentFactor { get; set; } = 0.5F; [Key(4)] - public float Ms1AlignmentTolerance { get; set; } = 0.015F; + public float Ms1AlignmentTolerance { get; set; } = 0.5F; [Key(5)] public float RetentionTimeAlignmentTolerance { get; set; } = 0.10F; [Key(6)] diff --git a/src/MSDIAL5/MsdialGcMsApi/Algorithm/Alignment/GcmsPeakJoiner.cs b/src/MSDIAL5/MsdialGcMsApi/Algorithm/Alignment/GcmsPeakJoiner.cs index 19660d59b..8f4021057 100644 --- a/src/MSDIAL5/MsdialGcMsApi/Algorithm/Alignment/GcmsPeakJoiner.cs +++ b/src/MSDIAL5/MsdialGcMsApi/Algorithm/Alignment/GcmsPeakJoiner.cs @@ -45,7 +45,7 @@ protected GcmsPeakJoiner(AlignmentIndexType indextype, RiCompoundType riCompound _comparer = comparer; _alignmentParameter = parameter.AlignmentBaseParam; _riCompoundType = riCompoundType; - _msMatchParam = msMatchParam; + _msMatchParam = new MsRefSearchParameterBase() { Ms1Tolerance = 0.5F, Ms2Tolerance = 0.5F, MassRangeBegin = 0, MassRangeEnd = 2000 }; _parameter = parameter; _evaluator = evaluator; _refer = refer;