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Clean up msms characterization (#701) #627

Clean up msms characterization (#701)

Clean up msms characterization (#701) #627

Triggered via push February 3, 2026 06:07
Status Success
Total duration 9m 4s
Artifacts 8

dotnet_test.yml

on: push
Matrix: publish-msdial4-console
Matrix: publish-msdial5-console
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102 warnings
test: src/Common/CommonStandard/StructureFinder/Mapper/MoleculeMapper.cs#L381
The variable 'ex' is declared but never used
test: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4340
The variable 'khi' is assigned but its value is never used
test: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4340
The variable 'klo' is assigned but its value is never used
test: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumReference' is assigned but its value is never used
test: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumMeasure' is assigned but its value is never used
test: src/Common/CommonStandard/StructureFinder/Utility/XlogpCalculator.cs#L15
The variable 'xlogp' is assigned but its value is never used
test: src/MSDIAL4/KeggApiConsoleApp/Program.cs#L16
The variable 'output' is assigned but its value is never used
test: src/MSDIAL4/KeggApiConsoleApp/Program.cs#L15
The variable 'ownfilepath' is assigned but its value is never used
test: src/MSDIAL4/KeggApiConsoleApp/Program.cs#L13
The variable 'folderpath' is assigned but its value is never used
test: src/MSDIAL4/KeggApiStandard/KeggProtocol.cs#L205
The variable 'ex' is declared but never used
test
The target framework 'netcoreapp3.0' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
test
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4-console (macos-latest, osx-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L97
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (macos-latest, osx-x64): src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4340
The variable 'khi' is assigned but its value is never used
publish-msdial4-console (macos-latest, osx-x64): src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4340
The variable 'klo' is assigned but its value is never used
publish-msdial4-console (macos-latest, osx-x64): src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumReference' is assigned but its value is never used
publish-msdial4-console (macos-latest, osx-x64): src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumMeasure' is assigned but its value is never used
publish-msdial4-console (macos-latest, osx-x64): src/Common/NCDK/SMARTS/SmartsPattern.cs#L37
XML comment has cref attribute 'SMARTSQueryTool' that could not be resolved
publish-msdial4-console (macos-latest, osx-x64): src/Common/NCDK/Smiles/SmilesParser.cs#L243
The variable 'e' is declared but never used
publish-msdial4-console (macos-latest, osx-x64): src/Common/NCDK/Smiles/SmilesParser.cs#L235
The variable 'e' is declared but never used
publish-msdial4-console (macos-latest, osx-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4-console (macos-latest, osx-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4-console (ubuntu-latest, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L344
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (ubuntu-latest, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L254
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (ubuntu-latest, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L210
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (ubuntu-latest, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L166
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (ubuntu-latest, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L112
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (ubuntu-latest, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L97
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (ubuntu-latest, linux-x64): src/Common/NCDK/SMARTS/SmartsPattern.cs#L37
XML comment has cref attribute 'SMARTSQueryTool' that could not be resolved
publish-msdial4-console (ubuntu-latest, linux-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4-console (ubuntu-latest, linux-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial5-console (ubuntu-latest, net8, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L344
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (ubuntu-latest, net8, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L254
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (ubuntu-latest, net8, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L210
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (ubuntu-latest, net8, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L166
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (ubuntu-latest, net8, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L112
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (ubuntu-latest, net8, linux-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L97
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (ubuntu-latest, net8, linux-x64): src/Common/NCDK/SMARTS/SmartsPattern.cs#L37
XML comment has cref attribute 'SMARTSQueryTool' that could not be resolved
publish-msdial5-console (ubuntu-latest, net8, linux-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial5-console (macos-latest, net8, osx-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L344
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (macos-latest, net8, osx-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L254
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (macos-latest, net8, osx-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L210
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (macos-latest, net8, osx-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L166
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (macos-latest, net8, osx-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L112
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (macos-latest, net8, osx-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L97
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial5-console (macos-latest, net8, osx-x64): src/Common/NCDK/SMARTS/SmartsPattern.cs#L37
XML comment has cref attribute 'SMARTSQueryTool' that could not be resolved
publish-msdial5-console (macos-latest, net8, osx-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial5: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4340
The variable 'khi' is assigned but its value is never used
publish-msdial5: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4340
The variable 'klo' is assigned but its value is never used
publish-msdial5: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumReference' is assigned but its value is never used
publish-msdial5: src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumMeasure' is assigned but its value is never used
publish-msdial5: src/Common/CommonStandard/StructureFinder/Utility/XlogpCalculator.cs#L15
The variable 'xlogp' is assigned but its value is never used
publish-msdial5: src/Common/CommonStandard/Lipidomics/SpectrumPeakGenerator.cs#L239
The variable 'speccomment_hgain' is assigned but its value is never used
publish-msdial5: src/Common/CommonStandard/Lipidomics/SpectrumPeakGenerator.cs#L237
The variable 'speccomment_hloss' is assigned but its value is never used
publish-msdial5: src/Common/NCDK/Smiles/SmilesParser.cs#L243
The variable 'e' is declared but never used
publish-msdial5: src/Common/NCDK/Smiles/SmilesParser.cs#L235
The variable 'e' is declared but never used
publish-msdial5
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial5
The target framework 'netcoreapp3.0' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial5-console (windows-latest, net48, win-x64): src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumReference' is assigned but its value is never used
publish-msdial5-console (windows-latest, net48, win-x64): src/Common/CommonStandard/Algorithm/Scoring/MsScanMatching.cs#L4241
The variable 'sumMeasure' is assigned but its value is never used
publish-msdial5-console (windows-latest, net48, win-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4-console (windows-latest, win-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L254
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (windows-latest, win-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L210
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (windows-latest, win-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L166
'WebRequest.Create(string)' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (windows-latest, win-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L112
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (windows-latest, win-x64): src/Common/CommonStandard/ClassyfireApiStandard/ClassfireProtocol.cs#L97
'WebClient.WebClient()' is obsolete: 'WebRequest, HttpWebRequest, ServicePoint, and WebClient are obsolete. Use HttpClient instead.' (https://aka.ms/dotnet-warnings/SYSLIB0014)
publish-msdial4-console (windows-latest, win-x64): src/Common/NCDK/SMARTS/SmartsPattern.cs#L37
XML comment has cref attribute 'SMARTSQueryTool' that could not be resolved
publish-msdial4-console (windows-latest, win-x64): src/Common/NCDK/Smiles/SmilesParser.cs#L243
The variable 'e' is declared but never used
publish-msdial4-console (windows-latest, win-x64): src/Common/NCDK/Smiles/SmilesParser.cs#L235
The variable 'e' is declared but never used
publish-msdial4-console (windows-latest, win-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4-console (windows-latest, win-x64)
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4: src/MSDIAL4/MassSpectrogram/MassSpectrogram/MassSpectrogramFE.cs#L291
'FormattedText.FormattedText(string, CultureInfo, FlowDirection, Typeface, double, Brush)' is obsolete: 'Use the PixelsPerDip override'
publish-msdial4: src/MSDIAL4/MassSpectrogram/MassSpectrogram/MassSpectrogramFE.cs#L289
'FormattedText.FormattedText(string, CultureInfo, FlowDirection, Typeface, double, Brush)' is obsolete: 'Use the PixelsPerDip override'
publish-msdial4: src/MSDIAL4/MassSpectrogram/MassSpectrogram/MassSpectrogramFE.cs#L266
'FormattedText.FormattedText(string, CultureInfo, FlowDirection, Typeface, double, Brush)' is obsolete: 'Use the PixelsPerDip override'
publish-msdial4: src/MSDIAL4/MassSpectrogram/MassSpectrogram/MassSpectrogramFE.cs#L224
'FormattedText.FormattedText(string, CultureInfo, FlowDirection, Typeface, double, Brush)' is obsolete: 'Use the PixelsPerDip override'
publish-msdial4: src/MSDIAL4/MassSpectrogram/MassSpectrogram/MassSpectrogramFE.cs#L184
'FormattedText.FormattedText(string, CultureInfo, FlowDirection, Typeface, double, Brush)' is obsolete: 'Use the PixelsPerDip override'
publish-msdial4: src/Common/NCDK/SMARTS/SmartsPattern.cs#L37
XML comment has cref attribute 'SMARTSQueryTool' that could not be resolved
publish-msdial4: src/Common/NCDK/Smiles/SmilesParser.cs#L243
The variable 'e' is declared but never used
publish-msdial4: src/Common/NCDK/Smiles/SmilesParser.cs#L235
The variable 'e' is declared but never used
publish-msdial4: src/Common/NCDK/Smiles/SmilesParser.cs#L243
The variable 'e' is declared but never used
publish-msdial4: src/Common/NCDK/Smiles/SmilesParser.cs#L235
The variable 'e' is declared but never used
publish-msdial4
The target framework 'netcoreapp3.1' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.
publish-msdial4
The target framework 'netcoreapp3.0' is out of support and will not receive security updates in the future. Please refer to https://aka.ms/dotnet-core-support for more information about the support policy.

Artifacts

Produced during runtime
Name Size Digest
MSDIAL4
17.4 MB
sha256:546021dfa1c5eab49e546c13297155a4f8eb23db21413a083e175d079168aeea
MSDIAL4-Console-macos-latest
42.5 MB
sha256:87c14291edb70c921071402218b22656110968eda3ab1e66e0c59fca77f46764
MSDIAL4-Console-ubuntu-latest
43 MB
sha256:8a814adff2901c1c85005153814a4f74012f439f9f7398fc8a34bfbd6713ddd1
MSDIAL4-Console-windows-latest
43.7 MB
sha256:f1446fec7bfbfc3ec5bf6887a775962d3b1b7719e2ba99fd0371cf47e5e515b2
MSDIAL5
16.4 MB
sha256:4529eba8ce55e170999bbc5f8a9b8f4aedbfd4de0fe8677fecd80d454afe3127
MSDIAL5-Console-macos-latest-net8
42.3 MB
sha256:b8be5beb655c58a3b8160d3225d6379e08527d5e9255d068548d08ca997de282
MSDIAL5-Console-ubuntu-latest-net8
43.2 MB
sha256:11b16082c8c82474c03dd5692387a65b142c2e736d34f1f5d77798b758007e0a
MSDIAL5-Console-windows-latest-net48
11.1 MB
sha256:ec01722cc20f67f8e5cc69ec27279e8b42b62ce1c35570bea31a666b72a31d77