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@relativeflux Thank you for your question and welcome to the STUMPY community. In general, as you've already identified, matrix profiles don't actually take "time" as an input and, instead, simply takes in a sequence of raw data points as input. In other words, matrix profiles assume that your data points are evenly spaced apart. The most natural thing for you to do is to impute the missing values in between and then apply the matrix profile thereafter.

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@seanlaw
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