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Handle time series plate data #6

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nlarusstone opened this issue Oct 20, 2023 · 1 comment
Open

Handle time series plate data #6

nlarusstone opened this issue Oct 20, 2023 · 1 comment

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@nlarusstone
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nlarusstone commented Oct 20, 2023

Currently, we assume that every plate looks something like this:

<> 1 2 3 4 5 6 7 8 9 10 11 12
A 0.5304 0.5228 0.5432 0.5385 0.537 0.5416 0.5438 0.5132 0.5088 0.4911 0.4845 0.5109
B 0.2225 0.2332 0.2389 0.2279 0.2284 0.2291 0.2317 0.2057 0.1886 0.196 0.2074 0.2181
C 0.1645 0.1933 0.187 0.194 0.1669 0.2016 0.2007 0.1934 0.1953 0.1942 0.1785 0.189
D 0.0867 0.0904 0.0882 0.0877 0.0861 0.0865 0.0846 0.0849 0.0849 0.0819 0.0756 0.0847
E 0.2056 0.2483 0.2359 0.2145 0.2312 0.2256 0.2408 0.2181 0.2098 0.1919 0.189 0.2187
F 0.1871 0.1858 0.1753 0.1755 0.1941 0.2058 0.1547 0.1894 0.17 0.1523 0.1759 0.1804
G 0.1645 0.1977 0.1867 0.1909 0.1924 0.1928 0.2025 0.1872 0.1857 0.1838 0.1699 0.1832
H 0.1995 0.1424 0.1948 0.183 0.1615 0.1791 0.1565 0.1709 0.1699 0.158 0.1711 0.1759

However, people store plate data in many different formats. In particular, time series data is often stored where each column is a well. The data looks like this:

t A1 A2 A3 A4 A5 A6 A7 A8 A9 A10 A11 A12
0 0.5304 0.5228 0.5432 0.5385 0.537 0.5416 0.5438 0.5132 0.5088 0.4911 0.4845 0.5109
1 0.2225 0.2332 0.2389 0.2279 0.2284 0.2291 0.2317 0.2057 0.1886 0.196 0.2074 0.2181
2 0.1645 0.1933 0.187 0.194 0.1669 0.2016 0.2007 0.1934 0.1953 0.1942 0.1785 0.189
3 0.0867 0.0904 0.0882 0.0877 0.0861 0.0865 0.0846 0.0849 0.0849 0.0819 0.0756 0.0847
4 0.2056 0.2483 0.2359 0.2145 0.2312 0.2256 0.2408 0.2181 0.2098 0.1919 0.189 0.2187
5 0.1871 0.1858 0.1753 0.1755 0.1941 0.2058 0.1547 0.1894 0.17 0.1523 0.1759 0.1804

TODO

Add a new chain which can parse this type of data and returns it in the same format as existing chains

@nlarusstone nlarusstone changed the title Handle different plate format options Handle time series plate data Oct 20, 2023
@taylo5jm
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taylo5jm commented Nov 1, 2023

Great idea! I've also seen some instrument software suites produce the transpose of the bottom matrix.

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