{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":119214027,"defaultBranch":"main","name":"wort","ownerLogin":"sourmash-bio","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-01-28T00:18:33.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/59402508?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1719413230.0","currentOid":""},"activityList":{"items":[{"before":"5afe48f662b2f4fb3f29ea8d4ac5c6511c90a9a7","after":"82a9996788c6bc0377762bc65d94479bb66bf520","ref":"refs/heads/lirber/pixi","pushedAt":"2024-08-01T03:34:53.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"split deps","shortMessageHtmlLink":"split deps"}},{"before":"0b961de59b426c2acc72b0c37b99bd4ff4360468","after":"5afe48f662b2f4fb3f29ea8d4ac5c6511c90a9a7","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-29T00:06:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"build docker images from pixi","shortMessageHtmlLink":"build docker images from pixi"}},{"before":"f7c8c23a8999928d2576788cd2075f35a527d91e","after":"0b961de59b426c2acc72b0c37b99bd4ff4360468","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-28T17:26:54.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"fix executable for sra tasks too","shortMessageHtmlLink":"fix executable for sra tasks too"}},{"before":"a1f56e5db6c3c0225e0fe6dc52c763ab27c0a01a","after":"f7c8c23a8999928d2576788cd2075f35a527d91e","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-28T16:57:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"lower linux req","shortMessageHtmlLink":"lower linux req"}},{"before":"fe8da9da575681cdfc8ef173168cee5eceb4f9e5","after":"a1f56e5db6c3c0225e0fe6dc52c763ab27c0a01a","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-23T05:01:26.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"update reqs","shortMessageHtmlLink":"update reqs"}},{"before":"6e238fcd7660652fa43d0b7b13b8c63f5a10bf23","after":"fe8da9da575681cdfc8ef173168cee5eceb4f9e5","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-23T03:46:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"update reqs","shortMessageHtmlLink":"update reqs"}},{"before":"fbb27dc64b056b44f4e387fdbf25a8adf77407f2","after":"6e238fcd7660652fa43d0b7b13b8c63f5a10bf23","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-23T03:44:45.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"update reqs","shortMessageHtmlLink":"update reqs"}},{"before":"53ec5d20bf8464cca19059866ce006e75767468f","after":"fbb27dc64b056b44f4e387fdbf25a8adf77407f2","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-23T03:43:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"update reqs","shortMessageHtmlLink":"update reqs"}},{"before":"7abda08551a139b76e3df9e5ff65d3b766657afe","after":"53ec5d20bf8464cca19059866ce006e75767468f","ref":"refs/heads/lirber/pixi","pushedAt":"2024-07-23T03:31:20.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"pixi update","shortMessageHtmlLink":"pixi update"}},{"before":"2027c3d8f389c53fde14b22f23162bdd38b99f52","after":null,"ref":"refs/heads/lirber/genomes_exec","pushedAt":"2024-06-26T14:47:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"}},{"before":"09d6ee552c85360fdc60e9d59e2fc757c2c6dd99","after":"2a0b2a2ccf9e73cd0b18c99f15c59f66a73f4b38","ref":"refs/heads/main","pushedAt":"2024-06-26T14:47:05.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"set executable for subprocess.run (#71)\n\nThe shell execution code changed in #68, `snakemake.shell` was replaced\r\nwith `subprocess.run`. This broke the NCBI assemblies processing, and\r\ninvestigation led to the conclusion it was because `snakemake.shell`\r\ndefaults to `/bin/bash` for the shell, while `subprocess.run` uses\r\n`/bin/sh`, and the assembly task uses a `bash` redirect that is a syntax\r\nerror for `sh`.\r\n\r\nAlso fix the shell quoting, since `{:q}` is `snakemake`-specific.","shortMessageHtmlLink":"set executable for subprocess.run (#71)"}},{"before":null,"after":"2027c3d8f389c53fde14b22f23162bdd38b99f52","ref":"refs/heads/lirber/genomes_exec","pushedAt":"2024-06-26T14:39:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"set executable for subprocess.run","shortMessageHtmlLink":"set executable for subprocess.run"}},{"before":null,"after":"7abda08551a139b76e3df9e5ff65d3b766657afe","ref":"refs/heads/lirber/pixi","pushedAt":"2023-12-18T04:48:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"init pixi","shortMessageHtmlLink":"init pixi"}},{"before":"fdc9f9452e1122874d0238ffa188a4707a72c100","after":null,"ref":"refs/heads/lirber/sentry","pushedAt":"2023-12-18T04:40:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"}},{"before":"30f413f5b3a707c85908c6bbfc015fb71502c1da","after":"09d6ee552c85360fdc60e9d59e2fc757c2c6dd99","ref":"refs/heads/main","pushedAt":"2023-12-18T04:40:47.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"Set up sentry (#68)\n\nFor tracking performance and errors across backend and workers","shortMessageHtmlLink":"Set up sentry (#68)"}},{"before":"fd70c58d7f24c9c2d971d4a6be2f6cbfd93f2209","after":"fdc9f9452e1122874d0238ffa188a4707a72c100","ref":"refs/heads/lirber/sentry","pushedAt":"2023-12-18T02:36:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"remove snakemake dep","shortMessageHtmlLink":"remove snakemake dep"}},{"before":null,"after":"fd70c58d7f24c9c2d971d4a6be2f6cbfd93f2209","ref":"refs/heads/lirber/sentry","pushedAt":"2023-12-17T22:58:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"init sentry","shortMessageHtmlLink":"init sentry"}},{"before":"b962e56ce2ad0737845d7eb29f1f3190d4e76753","after":null,"ref":"refs/heads/dependabot/pip/urllib3-1.26.17","pushedAt":"2023-10-18T00:49:14.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"44e999342d62576f0e51caa845b5d4b1df81ba5b","ref":"refs/heads/dependabot/pip/urllib3-1.26.18","pushedAt":"2023-10-18T00:49:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump urllib3 from 1.26.16 to 1.26.18\n\nBumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.16 to 1.26.18.\n- [Release notes](https://github.com/urllib3/urllib3/releases)\n- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)\n- [Commits](https://github.com/urllib3/urllib3/compare/1.26.16...1.26.18)\n\n---\nupdated-dependencies:\n- dependency-name: urllib3\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump urllib3 from 1.26.16 to 1.26.18"}},{"before":"91a0a3a8c48aae24708c233c0dbeaafa4b33dfa7","after":null,"ref":"refs/heads/dependabot/pip/gitpython-3.1.34","pushedAt":"2023-10-10T20:35:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"abcd9106e9e5035747584ebc9db64cdf3d95019c","ref":"refs/heads/dependabot/pip/gitpython-3.1.37","pushedAt":"2023-10-10T20:35:07.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump gitpython from 3.1.31 to 3.1.37\n\nBumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.31 to 3.1.37.\n- [Release notes](https://github.com/gitpython-developers/GitPython/releases)\n- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)\n- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.31...3.1.37)\n\n---\nupdated-dependencies:\n- dependency-name: gitpython\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump gitpython from 3.1.31 to 3.1.37"}},{"before":null,"after":"b962e56ce2ad0737845d7eb29f1f3190d4e76753","ref":"refs/heads/dependabot/pip/urllib3-1.26.17","pushedAt":"2023-10-03T03:48:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump urllib3 from 1.26.16 to 1.26.17\n\nBumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.16 to 1.26.17.\n- [Release notes](https://github.com/urllib3/urllib3/releases)\n- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)\n- [Commits](https://github.com/urllib3/urllib3/compare/1.26.16...1.26.17)\n\n---\nupdated-dependencies:\n- dependency-name: urllib3\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump urllib3 from 1.26.16 to 1.26.17"}},{"before":null,"after":"c2fd5ad061f04c79369b4efcb5e3583de6c4cd03","ref":"refs/heads/lirber/greyhound_updates","pushedAt":"2023-09-16T17:26:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"greyhound updates","shortMessageHtmlLink":"greyhound updates"}},{"before":"9600e12732e4fff44fddde0b7898bb3ab16fcc78","after":null,"ref":"refs/heads/dependabot/pip/gitpython-3.1.32","pushedAt":"2023-09-06T18:28:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"91a0a3a8c48aae24708c233c0dbeaafa4b33dfa7","ref":"refs/heads/dependabot/pip/gitpython-3.1.34","pushedAt":"2023-09-06T18:28:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump gitpython from 3.1.31 to 3.1.34\n\nBumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.31 to 3.1.34.\n- [Release notes](https://github.com/gitpython-developers/GitPython/releases)\n- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)\n- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.31...3.1.34)\n\n---\nupdated-dependencies:\n- dependency-name: gitpython\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump gitpython from 3.1.31 to 3.1.34"}},{"before":"db5aa9ac0fce1f4780de6815a8ab9c50c656ef35","after":null,"ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-09-04T20:26:21.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"}},{"before":"94930ca1b542eefeaa32e24afedd2d51c626d08c","after":"30f413f5b3a707c85908c6bbfc015fb71502c1da","ref":"refs/heads/main","pushedAt":"2023-09-04T20:26:15.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"Support metatranscriptomes in daily download (#62)\n\n- expose metatranscriptomes in CLI\r\n- allow setting `start` and `end` dates for range support\r\n- refactor code to make it easier to update in the future\r\n\r\npending: there is a limit of 10k results\r\n([source](https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch)),\r\nso might need to change the biopython call to support ranges longer than\r\na day (and :crossed_fingers: no day will have more than 10k records\r\n:joy: )\r\n\r\n---------\r\n\r\nCo-authored-by: Luiz Irber ","shortMessageHtmlLink":"Support metatranscriptomes in daily download (#62)"}},{"before":"8cc5a5527240f200f94fa5f3c44a81f60ca63097","after":"db5aa9ac0fce1f4780de6815a8ab9c50c656ef35","ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-09-04T20:20:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"deps","shortMessageHtmlLink":"deps"}},{"before":"f35feeb7a67075f8f630aa619e24a86370341f16","after":"8cc5a5527240f200f94fa5f3c44a81f60ca63097","ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-09-04T20:11:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"Fixes for genome download and frontend","shortMessageHtmlLink":"Fixes for genome download and frontend"}},{"before":"a97212c5a371d43f07faa8aa130964e806d07dd2","after":"f35feeb7a67075f8f630aa619e24a86370341f16","ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-08-17T01:39:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"fix output naming","shortMessageHtmlLink":"fix output naming"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEjrBCzwA","startCursor":null,"endCursor":null}},"title":"Activity ยท sourmash-bio/wort"}