-
Notifications
You must be signed in to change notification settings - Fork 14
UNIX Tutorial
The UNIX tutorial is 9 hour video tutorial covering the basic concepts of UNIX operating system. After completing the tutorial you should be able to confidently use the command line interface on either a local (laptop) or remote (cluster) Unix system and to navigate around the Unix file system from the command line and use a number of basic, common Unix commands. The UNIX tutorial is supplemented with many hands-on exercises.
Alternatively you can use slides from the UNIX tutorial : Day1, Day2, [Day3] (https://www.dropbox.com/s/88wu7svvfur8upw/day3_Unix.pdf?dl=0)
Please do not hesitate to contact us ([email protected]) if you have any comments, suggestions, or clarification requests regarding the tutorial or if you would like to contribute to this resource.
Don’t let your unmapped reads go to waste
- Main
- About ROP Tutorial
- What is ROP?
- How ROP works?
- How to prepare unmapped reads
- How to customize tools used by ROP
- Unix Tutorial
- Get started
- Targeted analysis
- ROP analysis: one RNA-Seq sample
- How to run ROP for mouse
- ROP analysis via qsub
- ROP analysis of multiple samples via qsub array
- Immune profiling by ROP (ImReP)
- ImRep across multiple samples
- ROP input details
- ROP output details
- Source of every last read
- Additional options
- How to calculate immune diversity?
- How to run hyper editing pipeline?