Hi,
I have run purge_haplotig hist for one of my diploid canu assemblies and got a nice bimodal profile
However doing the same thing for another assemly that suppose to be also diploid, I got the following profile. Not sure where to place the low, middle and high cov cutoffs and what is this plot telling me. Do I really have a diploid genome? my haplotypes are collapsed by Canu assembler?
@mroach-awri @skingan
Hi,
I have run purge_haplotig hist for one of my diploid canu assemblies and got a nice bimodal profile
However doing the same thing for another assemly that suppose to be also diploid, I got the following profile. Not sure where to place the low, middle and high cov cutoffs and what is this plot telling me. Do I really have a diploid genome? my haplotypes are collapsed by Canu assembler?
@mroach-awri @skingan