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MasloMaslaneMasloMaslane
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+309
-232
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12 files changed

+309
-232
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‎src/sio3pack/packages/package/model.py

+3-4
Original file line numberDiff line numberDiff line change
@@ -2,15 +2,14 @@
22
from typing import Any
33

44
from sio3pack import LocalFile
5+
from sio3pack.exceptions import SIO3PackException
56
from sio3pack.files import File
6-
from sio3pack.workflow import Workflow, WorkflowOperation
77
from sio3pack.packages.exceptions import UnknownPackageType
88
from sio3pack.packages.package.handler import NoDjangoHandler
99
from sio3pack.test import Test
1010
from sio3pack.utils.archive import Archive
1111
from sio3pack.utils.classinit import RegisteredSubclassesBase
12-
13-
from sio3pack.exceptions import SIO3PackException
12+
from sio3pack.workflow import Workflow, WorkflowOperation
1413

1514

1615
def wrap_exceptions(func):
@@ -20,7 +19,7 @@ def decorator(*args, **kwargs):
2019
try:
2120
return func(*args, **kwargs)
2221
except SIO3PackException:
23-
raise # Do not wrap SIO3PackExceptions again
22+
raise # Do not wrap SIO3PackExceptions again
2423
except Exception as e:
2524
raise SIO3PackException(f"SIO3Pack raised an exception in {func.__name__} function.", e)
2625

‎src/sio3pack/packages/sinolpack/model.py

+1-1
Original file line numberDiff line numberDiff line change
@@ -5,12 +5,12 @@
55
import yaml
66

77
from sio3pack.files import File, LocalFile
8-
from sio3pack.workflow import Workflow, WorkflowManager, WorkflowOperation
98
from sio3pack.packages.exceptions import ImproperlyConfigured
109
from sio3pack.packages.package import Package
1110
from sio3pack.packages.sinolpack.enums import ModelSolutionKind
1211
from sio3pack.util import naturalsort_key
1312
from sio3pack.utils.archive import Archive, UnrecognizedArchiveFormat
13+
from sio3pack.workflow import Workflow, WorkflowManager, WorkflowOperation
1414

1515

1616
class Sinolpack(Package):

‎src/sio3pack/visualizer/__init__.py

+135-106
Original file line numberDiff line numberDiff line change
@@ -4,13 +4,13 @@
44
try:
55
import dash
66
import dash_cytoscape as cyto
7-
from dash import html, Output, Input
7+
from dash import Input, Output, html
88
except ImportError:
99
raise ImportError("Please install the 'dash' and 'dash-cytoscape' packages to use the visualizer.")
1010

11+
import json
1112
import os
1213
import sys
13-
import json
1414

1515

1616
def main():
@@ -32,32 +32,28 @@ def main():
3232

3333
# Create nodes for observable registers.
3434
for register in range(graph["observable_registers"]):
35-
elements.append({
36-
"data": {
37-
"id": f"obs_register_{register}",
38-
"label": f"Observable register {register}",
39-
"info": "This is an observable register. It's an output of a workflow."
40-
},
41-
"classes": "register"
42-
})
35+
elements.append(
36+
{
37+
"data": {
38+
"id": f"obs_register_{register}",
39+
"label": f"Observable register {register}",
40+
"info": "This is an observable register. It's an output of a workflow.",
41+
},
42+
"classes": "register",
43+
}
44+
)
4345
ins[register] = [f"obs_register_{register}"]
4446
rendered_registers.add(register)
4547

46-
4748
script_i = 0
4849
execution_i = 0
4950
# First pass to create nodes and mark input registers.
5051
for task in graph["tasks"]:
5152
if task["type"] == "script":
5253
id = f"script_{script_i}"
53-
elements.append({
54-
"data": {
55-
"id": id,
56-
"label": task.get("name", f"Script {script_i}"),
57-
"info": task
58-
},
59-
"classes": "script"
60-
})
54+
elements.append(
55+
{"data": {"id": id, "label": task.get("name", f"Script {script_i}"), "info": task}, "classes": "script"}
56+
)
6157
if task["reactive"]:
6258
elements[-1]["classes"] += " reactive"
6359
script_i += 1
@@ -67,14 +63,12 @@ def main():
6763
ins[register].append(id)
6864
elif task["type"] == "execution":
6965
id = f"execution_{execution_i}"
70-
elements.append({
71-
"data": {
72-
"id": id,
73-
"label": task.get("name", f"Execution {execution_i}"),
74-
"info": task
75-
},
76-
"classes": "execution"
77-
})
66+
elements.append(
67+
{
68+
"data": {"id": id, "label": task.get("name", f"Execution {execution_i}"), "info": task},
69+
"classes": "execution",
70+
}
71+
)
7872
if task["exclusive"]:
7973
elements[-1]["classes"] += " exclusive"
8074

@@ -99,31 +93,37 @@ def main():
9993

10094
for register in registers:
10195
if register not in ins:
102-
elements.append({
103-
"data": {
104-
"id": f"register_{register}",
105-
"label": f"Register {register}",
106-
"info": f"This is a register. It's an intermediate value in a workflow."
107-
},
108-
"classes": "register"
109-
})
96+
elements.append(
97+
{
98+
"data": {
99+
"id": f"register_{register}",
100+
"label": f"Register {register}",
101+
"info": f"This is a register. It's an intermediate value in a workflow.",
102+
},
103+
"classes": "register",
104+
}
105+
)
110106
ins[register] = [f"register_{register}"]
111107
rendered_registers.add(register)
112108
for id in ins[register]:
113109
if task["type"] == "script":
114-
elements.append({
115-
"data": {
116-
"source": f"script_{script_i}",
117-
"target": id,
110+
elements.append(
111+
{
112+
"data": {
113+
"source": f"script_{script_i}",
114+
"target": id,
115+
}
118116
}
119-
})
117+
)
120118
elif task["type"] == "execution":
121-
elements.append({
122-
"data": {
123-
"source": f"execution_{execution_i}",
124-
"target": id,
119+
elements.append(
120+
{
121+
"data": {
122+
"source": f"execution_{execution_i}",
123+
"target": id,
124+
}
125125
}
126-
})
126+
)
127127
if register not in rendered_registers:
128128
elements[-1]["data"]["label"] = f"via register {register}"
129129

@@ -133,70 +133,99 @@ def main():
133133
execution_i += 1
134134

135135
app = dash.Dash(__name__)
136-
app.layout = html.Div([
137-
html.Div([
138-
cyto.Cytoscape(
139-
id='cytoscape',
140-
layout={"name": "breadthfirst", "directed": True},
141-
style={'width': '100%', 'height': '100vh'},
142-
elements=elements,
143-
stylesheet=[
144-
{"selector": "node", "style": {
145-
"label": "data(label)",
146-
"text-valign": "center",
147-
"text-margin-y": "-20px",
148-
}},
149-
{"selector": "edge", "style": {
150-
"curve-style": "bezier", # Makes edges curved for better readability
151-
"target-arrow-shape": "triangle", # Adds an arrowhead to indicate direction
152-
"arrow-scale": 1.5, # Makes the arrow larger
153-
"line-color": "#0074D9", # Edge color
154-
"target-arrow-color": "#0074D9", # Arrow color
155-
"width": 2, # Line thickness
156-
"content": "data(label)", # Show edge label on hover
157-
"font-size": "12px",
158-
"color": "#ff4136",
159-
"text-background-opacity": 1,
160-
"text-background-color": "white",
161-
"text-background-shape": "roundrectangle",
162-
"text-border-opacity": 1,
163-
"text-border-width": 1,
164-
"text-border-color": "#ff4136",
165-
}},
166-
{"selector": ".register", "style": {
167-
"shape": "rectangle",
168-
}},
169-
{"selector": ".script", "style": {
170-
"shape": "roundrectangle",
171-
}},
172-
{"selector": ".execution", "style": {
173-
"shape": "ellipse",
174-
}},
175-
{"selector": ".reactive", "style": {
176-
"background-color": "#ff851b",
177-
}},
178-
{"selector": ".exclusive", "style": {
179-
"background-color": "#ff4136",
180-
}},
136+
app.layout = html.Div(
137+
[
138+
html.Div(
139+
[
140+
cyto.Cytoscape(
141+
id="cytoscape",
142+
layout={"name": "breadthfirst", "directed": True},
143+
style={"width": "100%", "height": "100vh"},
144+
elements=elements,
145+
stylesheet=[
146+
{
147+
"selector": "node",
148+
"style": {
149+
"label": "data(label)",
150+
"text-valign": "center",
151+
"text-margin-y": "-20px",
152+
},
153+
},
154+
{
155+
"selector": "edge",
156+
"style": {
157+
"curve-style": "bezier", # Makes edges curved for better readability
158+
"target-arrow-shape": "triangle", # Adds an arrowhead to indicate direction
159+
"arrow-scale": 1.5, # Makes the arrow larger
160+
"line-color": "#0074D9", # Edge color
161+
"target-arrow-color": "#0074D9", # Arrow color
162+
"width": 2, # Line thickness
163+
"content": "data(label)", # Show edge label on hover
164+
"font-size": "12px",
165+
"color": "#ff4136",
166+
"text-background-opacity": 1,
167+
"text-background-color": "white",
168+
"text-background-shape": "roundrectangle",
169+
"text-border-opacity": 1,
170+
"text-border-width": 1,
171+
"text-border-color": "#ff4136",
172+
},
173+
},
174+
{
175+
"selector": ".register",
176+
"style": {
177+
"shape": "rectangle",
178+
},
179+
},
180+
{
181+
"selector": ".script",
182+
"style": {
183+
"shape": "roundrectangle",
184+
},
185+
},
186+
{
187+
"selector": ".execution",
188+
"style": {
189+
"shape": "ellipse",
190+
},
191+
},
192+
{
193+
"selector": ".reactive",
194+
"style": {
195+
"background-color": "#ff851b",
196+
},
197+
},
198+
{
199+
"selector": ".exclusive",
200+
"style": {
201+
"background-color": "#ff4136",
202+
},
203+
},
204+
],
205+
),
181206
],
207+
style={"flex": "3", "height": "100vh"},
182208
),
183-
], style={"flex": "3", "height": "100vh"}),
184-
185-
html.Div([
186-
html.Pre(id='node-data', style={
187-
"padding": "10px",
188-
"white-space": "pre",
189-
"overflow": "auto",
190-
"max-height": "95vh",
191-
"max-width": "100%"
192-
})
193-
], style={"flex": "1", "height": "100vh", "background-color": "#f7f7f7"})
194-
], style={"display": "flex", "flex-direction": "row", "height": "100vh"})
195-
196-
@app.callback(
197-
Output('node-data', 'children'),
198-
Input('cytoscape', 'tapNodeData')
209+
html.Div(
210+
[
211+
html.Pre(
212+
id="node-data",
213+
style={
214+
"padding": "10px",
215+
"white-space": "pre",
216+
"overflow": "auto",
217+
"max-height": "95vh",
218+
"max-width": "100%",
219+
},
220+
)
221+
],
222+
style={"flex": "1", "height": "100vh", "background-color": "#f7f7f7"},
223+
),
224+
],
225+
style={"display": "flex", "flex-direction": "row", "height": "100vh"},
199226
)
227+
228+
@app.callback(Output("node-data", "children"), Input("cytoscape", "tapNodeData"))
200229
def display_task_info(data):
201230
if data is None:
202231
return "Click on a node to see its info."

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