======= /////// Project of Biostatistics 830 /////////////

C++ code to do imputation of hyplotypes with a HMM... Each job has its own head file *.h

CalcGL.h contains three functions (InitializeFirstVector, Transpose, Condition) to be used in HMM LeftWalk & RightWalk. Please include CalcGL.h if need to call those three functions by: #include "CalcGL.h"

compile cpp code :

g++ -I ./libStatGen/include/ -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS main.cpp ../libStatGen/libStatGen.a -lm -lz -o impute