_pkgdown.yml

title: "GenomicSuperSignaturePaper"
type: inverse

navbar:
  title: ~
  type: default
  left:
    - text: RAVmodel
      menu:
      - text: Training Data
        href: articles/training_datasets/available_samples.html
      - text: Number of clusters
        href: articles/select_numOfClusters/find_optimum_k.html
      - text: RAVmodel Characterization
        href: articles/model/What_RAVmodel_Is.html
      - text: Pathway separation
        href: articles/others/repeat_Fig5_Pathway_Separation.html
    - text: EDA
      menu:
      - text: Database search
        href: articles/TCGA/TCGA_5studies.html
      - text: Annoated PCA
        href: articles/E-MTAB-2452/E-MTAB-2452.html
    - text: Subtyping
      menu:
      - text: CRC subtype scores
        href: articles/CRC/CRC_Subtyping.html
      - text: RAVs similar to PCSS1/2
        href: articles/CRC/PCSS_vs_RAV.html
      - text: Metadata based search
        href: articles/CRC/metadata_based_search.html
      - text: CRC clinical variables
        href: articles/CRC/CRC_ClinicalVar.html
    - text: Transfer Learning
      menu:
      - text: Neutrophil (SLE-WB)
        href: articles/SLE-WB/neutrophil_counts_SLE-WB.html
      - text: Neutrophil (NARES)
        href: articles/NARES/neutrophil_counts_NARES.html
    - text: Workshop
      menu:
      - text: BioC Pkg Demo
        href: articles/GenomicSuperSignature_Live_Demo.html
  right:
   - icon: fa-github fa-lg
     href: https://github.com/shbrief/GenomicSuperSignaturePaper