From 679214f371869dae0ce7fb421dbf990c67fc3b29 Mon Sep 17 00:00:00 2001 From: JiaShun-Xiao Date: Fri, 17 Jun 2022 20:17:44 +0800 Subject: [PATCH] fix the bug of relative coordinates --- squidpy/im/_feature_mixin.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/squidpy/im/_feature_mixin.py b/squidpy/im/_feature_mixin.py index ffc6f150..8365978c 100644 --- a/squidpy/im/_feature_mixin.py +++ b/squidpy/im/_feature_mixin.py @@ -343,12 +343,12 @@ def convert_to_full_image_coordinates(x: NDArrayA, y: NDArrayA) -> NDArrayA: y_slc, x_slc = coord.to_image_coordinates(padding).slice # relative coordinates - y = (y - np.min(y)) / (np.max(y) - np.min(y)) - x = (x - np.min(x)) / (np.max(x) - np.min(x)) + #y = (y - np.min(y)) / (np.max(y) - np.min(y)) + #x = (x - np.min(x)) / (np.max(x) - np.min(x)) # coordinates in the uncropped image - y = coord.slice[0].start + (y_slc.stop - y_slc.start) * y - x = coord.slice[1].start + (x_slc.stop - x_slc.start) * x + y = coord.slice[0].start + y#(y_slc.stop - y_slc.start) * y + x = coord.slice[1].start + x#(x_slc.stop - x_slc.start) * x return np.c_[x, y] # type: ignore[no-any-return]