update_website_content.yml

name: Update website content

on:
  push:
    branches:
      - 'main'
      - 'test_website'

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  update_content:
    runs-on: ubuntu-latest

    env:
      UPDATE_BRANCH_NAME: "auto_update_content_${{ github.run_number }}"

    steps:
    - uses: actions/checkout@v3
      with:
        fetch-depth: 1
        path: openproblems

    - name: Checkout website repo
      uses: actions/checkout@v3
      with:
        fetch-depth: 1
        repository: openproblems-bio/website
        path: website
        token: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }}

    - name: Set up website Git branch
      working-directory: website
      run: |
        git checkout -b $UPDATE_BRANCH_NAME

    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        python-version: "3.8"

    - name: Install package & dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -U wheel setuptools
        pip install -U --editable ./openproblems[process]
        python -c "import openproblems"

    - name: Parse results
      run: |
        rm -r website/content/benchmarks/*/
        python openproblems/workflow/generate_website_markdown.py website/content/benchmarks
        cd website
        git diff --exit-code --quiet || echo "CHANGED=true" >> $GITHUB_ENV

    - name: Upload markdown
      uses: actions/upload-artifact@main
      with:
        name: markdown
        path: website/content/benchmarks

    - name: Push to openproblems-bio/website
      if: |
        env.CHANGED == 'true' &&
        (
          startsWith(github.ref, 'refs/heads/main') ||
          endsWith(github.event.head_commit.message, '# publish')
        )
      shell: bash
      working-directory: './website'
      env:
        GITHUB_TOKEN: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }}
      run: |
        git push origin "${UPDATE_BRANCH_NAME}"

    - name: Create website Pull Request
      if: |
        env.CHANGED == 'true' &&
        (
          startsWith(github.ref, 'refs/heads/main') ||
          endsWith(github.event.head_commit.message, '# publish')
        )
      uses: peter-evans/create-pull-request@v4
      with:
        branch: ${{ env.UPDATE_BRANCH_NAME }}
        delete-branch: true
        base: main
        title: '[auto] Update benchmark content'
        reviewers: scottgigante-immunai,rcannood,dburkhardt
        path: './website'
        token: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }}
        author: "openproblems-bio <singlecellopenproblems@protonmail.com>"
        commit-message: "Update benchmark content # ci skip"