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pom.xml
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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<properties>
<bundle.symbolicName>ARACNE</bundle.symbolicName>
<bundle.namespace>fr.systemsbiology.aracneAlgorithm.internal</bundle.namespace>
<cytoscape.api.version>3.1.0</cytoscape.api.version>
<cyni.api.version>1.0.0</cyni.api.version>
<maven-bundle-plugin.version>2.3.4</maven-bundle-plugin.version>
<osgi.api.version>4.2.0</osgi.api.version>
</properties>
<groupId>fr.systemsbiology.aracneAlgorithm</groupId>
<artifactId>aracneAlgorithm</artifactId>
<packaging>bundle</packaging>
<name>${bundle.symbolicName}</name>
<version>1.0.0-beta1</version>
<build>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>${maven-bundle-plugin.version}</version>
<extensions>true</extensions>
<configuration>
<instructions>
<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
<Bundle-Version>${project.version}</Bundle-Version>
<Export-Package>!${bundle.namespace}.*</Export-Package>
<Embed-Dependency>commons-discovery;commons-math3;commons-math;colt;inline=true</Embed-Dependency>
<Cytoscape-API-Compatibility>3.1</Cytoscape-API-Compatibility>
<Cytoscape-App-Dependencies>Cyni Toolbox;1.0.0.beta6</Cytoscape-App-Dependencies>
<!-- <Import-Package>!EDU.oswego.cs.dl.util.concurrent</Import-Package>-->
<Private-Package>${bundle.namespace}.*</Private-Package>
<Bundle-Activator>${bundle.namespace}.CyActivator</Bundle-Activator>
</instructions>
</configuration>
</plugin>
</plugins>
</build>
<!-- Links to the Cytoscape Maven repositories. -->
<repositories>
<repository>
<id>apache</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
<name>Apache Releases</name>
<url>http://code.cytoscape.org/nexus/content/repositories/public/</url>
</repository>
<repository>
<id>cytoscape_snapshots</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>false</enabled>
</releases>
<name>Cytoscape Snapshots</name>
<url>http://code.cytoscape.org/nexus/content/repositories/snapshots/</url>
</repository>
<repository>
<id>cytoscape_releases</id>
<snapshots>
<enabled>false</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
<name>Cytoscape Releases</name>
<url>http://code.cytoscape.org/nexus/content/repositories/releases/</url>
</repository>
<repository>
<id>cytoscape_apps_api</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
<name>Cytoscape Apps API Releases</name>
<url>http://code.cytoscape.org/nexus/content/repositories/apps/</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>swing-application-api</artifactId>
<version>${cytoscape.api.version}</version>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>model-api</artifactId>
<version>${cytoscape.api.version}</version>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>work-api</artifactId>
<version>${cytoscape.api.version}</version>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>service-api</artifactId>
<version>${cytoscape.api.version}</version>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>layout-api</artifactId>
<version>${cytoscape.api.version}</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.core</artifactId>
<version>${osgi.api.version}</version>
</dependency>
<dependency>
<groupId>fr.systemsbiology</groupId>
<artifactId>cyni-api</artifactId>
<version>${cyni.api.version}</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-math3</artifactId>
<version>3.0</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-math</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-discovery</artifactId>
<version>0.5</version>
</dependency>
<dependency>
<groupId>cytoscape-temp</groupId>
<artifactId>colt</artifactId>
<version>1.0.3</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.8.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>1.8.5</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.ops4j.pax.logging</groupId>
<artifactId>pax-logging-api</artifactId>
<version>1.5.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>service-api</artifactId>
<version>${cytoscape.api.version}</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>cytoscape-temp</groupId>
<artifactId>parallelcolt</artifactId>
<version>0.9.4</version>
</dependency>
</dependencies>
</project>