Versions The current versions of software bedGraphToBigWig bedToBigBed bedtools v2.26.0 bedops v2.4.14 bismark v0.16.1 bowtie2 v2.2.9 cutadapt v1.12 FastQC v0.11.5 macs2 v2.1.0.20140616 multiqc v0.9.0 R >= v3.3.0 annotatr csaw devtools DSS optparse samtools v1.3.1 trim_galore v0.4.1