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Installation

Check the list of dependencies for more information.

  1. Install the cgat-core pipeline system following the instructions here: https://github.com/cgat-developers/cgat-core/

  2. Clone the tenx repository, e.g.

   $> git clone https://github.com/sansomlab/tenx.git
  1. In the same virtual or conda environment as cgat-core install the required python packages:
   $> pip install -r tenx/python/requirements.txt
  1. To install the required R packages (R>4.0.0, bioconductor and devtools are prerequisite):
   $> Rscript tenx/R/install.packages.R