Genomic Surveillance is a collection of statistical algorithms to monitor local prevalence of viral lineages.
To install genomicsurveillance via Pypi simply type
$ pip install genomicsurveillanceinto your shell.
We provide a Google Colab notebook that explains data preparation steps and the usage of the model.
https://colab.research.google.com/drive/1bKEnykFe_gSD_VWk04LWNIsoZiQJ8RcB?usp=sharing
Harald Vöhringer, Matthew Sinnott, Theo Sanderson, Roberto Amato, Inigo Martincorena, Dominic Kwiatkowski, Jeffrey C. Barrett and Moritz Gerstung, on behalf of The COVID-19 Genomics UK (COG-UK)