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Does it support multiple input files like input*.fa ? #52

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Ural-Yunusbaev opened this issue Nov 13, 2021 · 1 comment
Open

Does it support multiple input files like input*.fa ? #52

Ural-Yunusbaev opened this issue Nov 13, 2021 · 1 comment

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@Ural-Yunusbaev
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Does it support multiple input files like input*.fa.gz ?
How to provide multiple input files?
For ex I have:
input1.fa
input2.fa
input3.fa

How the command will look like?
@ruanjue
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ruanjue commented Nov 15, 2021 •
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smartdenovo.pl doesn't support multiple input files. To input more than one files, first, invoke smartdenovo.pl to generate shell scripts on one file, then edit the script, see below.

 wtpre -J 5000 -p pb my_raw_reads_1.fq my_raw_reads_2.fq  | gzip -c - 1 > <PREFIX>.fa.gz

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@ruanjue @Ural-Yunusbaev