Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Searchlight memory issues #45

Open
PuddleJumper2018 opened this issue Aug 24, 2021 · 0 comments
Open

Searchlight memory issues #45

PuddleJumper2018 opened this issue Aug 24, 2021 · 0 comments

Comments

@PuddleJumper2018
Copy link

Hi, I'm using this toolbox to perform searchlight:
It seems this line of code:
rsa.fmri.fMRISearchlight(fullBrainVols, binaryMasks_nS, models, betaCorrespondence, userOptions);

is chewing up 30GB of memory per participant (I have total of 34 ppts and one model so requires 1000GB in total) to process. We've already upgraded memory at the computing cluster once, but insufficiently. Can anyone advice on where does this function digest so much memory? What can we do to make it lightweight?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant