diff --git a/README.md b/README.md index cd3cb0ae..501c9ce0 100644 --- a/README.md +++ b/README.md @@ -24,11 +24,12 @@ image | description [tidyverse](https://hub.docker.com/r/rocker/tidyverse) | Adds tidyverse & devtools | [![](https://img.shields.io/docker/pulls/rocker/tidyverse.svg)](https://hub.docker.com/r/rocker/tidyverse) [verse](https://hub.docker.com/r/rocker/verse) | Adds tex & publishing-related packages | [![](https://img.shields.io/docker/pulls/rocker/verse.svg)](https://hub.docker.com/r/rocker/verse) [geospatial](https://hub.docker.com/r/rocker/geospatial) | Adds geospatial packages on top of 'verse' | [![](https://img.shields.io/docker/pulls/rocker/geospatial.svg)](https://hub.docker.com/r/rocker/geospatial) +[ci](https://hub.docker.com/r/rocker/ci) | r-ver with system dependencies for tidyverse, verse, and geospatial, no R packages | [![](https://img.shields.io/docker/pulls/rocker/ci.svg)](https://hub.docker.com/r/rocker/ci) [shiny](https://hub.docker.com/r/rocker/shiny) | Adds shiny server on top of 'r-ver' | [![](https://img.shields.io/docker/pulls/rocker/shiny.svg)](https://hub.docker.com/r/rocker/shiny) [shiny-verse](https://hub.docker.com/r/rocker/shiny-verse) | Adds tidyverse packages on top of 'shiny' | [![](https://img.shields.io/docker/pulls/rocker/shiny-verse.svg)](https://hub.docker.com/r/rocker/shiny-verse) [binder](https://hub.docker.com/r/rocker/binder) | Adds requirements to 'geospatial' to run repositories on [mybinder.org](https://mybinder.org/) | [![](https://img.shields.io/docker/pulls/rocker/binder.svg)](https://hub.docker.com/r/rocker/binder) [cuda](https://hub.docker.com/r/rocker/cuda) | Adds cuda and Python to 'r-ver' (a.k.a `rocker/r-ver:X.Y.Z-cuda10.1`) | [![](https://img.shields.io/docker/pulls/rocker/cuda.svg)](https://hub.docker.com/r/rocker/cuda) -[ml](https://hub.docker.com/r/rocker/ml) | Adds rstudio server, tiyverse, devtools to 'cuda' | [![](https://img.shields.io/docker/pulls/rocker/ml.svg)](https://hub.docker.com/r/rocker/ml) +[ml](https://hub.docker.com/r/rocker/ml) | Adds rstudio server, tidyverse, devtools to 'cuda' | [![](https://img.shields.io/docker/pulls/rocker/ml.svg)](https://hub.docker.com/r/rocker/ml) [ml-verse](https://hub.docker.com/r/rocker/ml-verse) | Adds tex & publishing-related packages & geospatial packages to 'ml' | [![](https://img.shields.io/docker/pulls/rocker/ml-verse.svg)](https://hub.docker.com/r/rocker/ml-verse) **For more information on public container images, please see [the Wiki of this repository](https://github.com/rocker-org/rocker-versioned2/wiki).** diff --git a/scripts/install_renv_sysdeps.sh b/scripts/install_renv_sysdeps.sh new file mode 100644 index 00000000..40d6601f --- /dev/null +++ b/scripts/install_renv_sysdeps.sh @@ -0,0 +1,118 @@ +#!/bin/bash +set -e + +## build ARGs +NCPUS=${NCPUS:--1} + +# always set this for scripts but don't declare as ENV.. +export DEBIAN_FRONTEND=noninteractive +export PATH=$PATH:/usr/local/texlive/bin/x86_64-linux/ + +apt-get update + +#----- SysDeps for Tidyverse----- +apt-get install -y --no-install-recommends \ + file \ + git \ + libapparmor1 \ + libgc1c2 \ + libclang-dev \ + libcurl4-openssl-dev \ + libedit2 \ + libobjc4 \ + libssl-dev \ + libpq5 \ + lsb-release \ + psmisc \ + procps \ + python-setuptools \ + pwgen \ + sudo \ + wget + +#----- SysDeps for Verse----- +apt-get install -y --no-install-recommends \ + cmake \ + default-jdk \ + fonts-roboto \ + ghostscript \ + hugo \ + less \ + libbz2-dev \ + libglpk-dev \ + libgmp3-dev \ + libfribidi-dev \ + libharfbuzz-dev \ + libhunspell-dev \ + libicu-dev \ + liblzma-dev \ + libmagick++-dev \ + libopenmpi-dev \ + libpcre2-dev \ + libv8-dev \ + libxml2-dev\ + libxslt1-dev \ + libzmq3-dev \ + qpdf \ + texinfo \ + software-properties-common \ + vim + +# librdf0-dev depends on libcurl4-gnutils-dev instead of libcurl4-openssl-dev... +# So: we can build the redland package bindings and then swap back to libcurl-openssl-dev... (ick) +# explicitly install runtime library sub-deps of librdf0-dev so they are not auto-removed. +apt-get install -y librdf0-dev +install2.r --error --skipinstalled -n $NCPUS redland +apt-get install -y \ + libcurl4-openssl-dev \ + libxslt-dev \ + librdf0 \ + redland-utils \ + rasqal-utils \ + raptor2-utils \ + && apt-get remove -y systemd \ + && apt-get -y autoremove + +apt-get install -y libgit2-dev libcurl4-openssl-dev + +## Add LaTeX, rticles and bookdown support +wget "https://travis-bin.yihui.name/texlive-local.deb" \ + && dpkg -i texlive-local.deb \ + && rm texlive-local.deb + +## Install texlive and pandoc +/rocker_scripts/install_texlive.sh +/rocker_scripts/install_pandoc.sh + +#----- SysDeps for Geospatial----- + +apt-get install -y --no-install-recommends \ + gdal-bin \ + lbzip2 \ + libfftw3-dev \ + libgdal-dev \ + libgeos-dev \ + libgsl0-dev \ + libgl1-mesa-dev \ + libglu1-mesa-dev \ + libhdf4-alt-dev \ + libhdf5-dev \ + libjq-dev \ + libpq-dev \ + libproj-dev \ + libprotobuf-dev \ + libnetcdf-dev \ + libsqlite3-dev \ + libudunits2-dev \ + lsb-release \ + netcdf-bin \ + postgis \ + protobuf-compiler \ + sqlite3 \ + tk-dev \ + unixodbc-dev + + +#----- Cleanup ----- +rm -rf /var/lib/apt/lists/* +