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Notebooks containing example code for use with Quilt data repositories

Overview

Quilt provides versioned, reusable building blocks for analysis in the form of data packages. A data package may contain data of any type or any size.

Quilt does for data what package managers do for code: provide a centralized store of record.

More information.

About this repository

This repository contains example code for use with Quilt data repositories associated with my public Quilt packages

Setting up

  1. Build a virtual environment:
robnewman$ python3 -m venv ~/venv/quilt-py3
robnewman$ source ~/venv/quilt-py3
  1. Install packages:
(quilt-py3) robnewman$ pip install -r REQUIREMENTS.txt
  1. Set up a new kernel:

This is useful if you want to force Jupyter to use your virtual environment Python version and not a default from, for example, Anaconda.

(quilt-py3) robnewman$ ipython kernel install --user --name=quilt

Debugging

Getting the jupyterlab-quilt extension installed: Yarn version skew

Further reading