Using SCNorm with scRNA-seq with no multiple conditions

[HaniJieunKim]

Hi!

Is it possible use SCNorm on a dataset without multiple conditions?

I receive an error that says I must Must supply conditions.

Thanks in advance for answering my query.

Best regards,

Hani

[rhondabacher]

Hi Hani, Thank you for the message. Yes, you can set the conditions parameter as: rep("1", ncol(yourData)) to indicate the cells are all from the same condition. Best, Rhonda

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On Tue, Mar 23, 2021 at 1:40 AM Hani Kim ***@***.***> wrote: Hi! Is it possible use SCNorm on a dataset without multiple conditions? I receive an error that says I must Must supply conditions. Thanks in advance for answering my query. Best regards, Hani — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#32>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABSOD3BRAOMQECPILMPCHF3TFASU5ANCNFSM4ZUPLFAQ> .

-- Rhonda Bacher, PhD Assistant Professor Department of Biostatistics University of Florida Office: 5239 CTRB Phone: 352-294-5914 Email: ***@***.*** http://rhondabacher.com/

[HaniJieunKim]

Great! Thank you!