Skip to content

sample_embedding_W.csv and feature_embedding_H.csv Cause for the 0.0 value #1

@CHENzzzjj

Description

@CHENzzzjj

Hello,
We executed the command python/impute.py -in <data_folder>, utilizing nine datasets obtained from the MIRTH Benchmarking data on GitHub.With or without parameter modification,we encounter 0.0 values in the result files sample_embedding_W.csv and feature_embedding_H.csv, whereas imputed_aggregate_data.csv contains values ranging between 0 and 1 .Furthermore, upon comparison, we noticed discrepancies betweenthe sample embedding matrices W and H in additional file 3 of MIRTH: Metabolite Imputation via Rank-Transformation and Harmonization and our results.
Could you kindly advise if we are encountering any issues with left-censored processing? And could you please advise if the occurrence of 0.0 values is expected or if there might be a problem with our implementation?Or do we need to change any special script parameters?

Thank you.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions