Rename dada2gpu -> py throughout pipeline #20
Workflow file for this run
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| name: Build container image | |
| on: | |
| push: | |
| branches: [main, nextflow-pipeline] | |
| paths: | |
| - 'nextflow/**' | |
| - '.github/workflows/build-container.yml' | |
| - '!nextflow/conda-envs/**' | |
| workflow_dispatch: | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository_owner }}/microscape | |
| permissions: | |
| contents: read | |
| packages: write | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 120 | |
| steps: | |
| - name: Maximize build space | |
| uses: easimon/maximize-build-space@v10 | |
| with: | |
| remove-dotnet: true | |
| remove-android: true | |
| remove-haskell: true | |
| remove-codeql: true | |
| remove-docker-images: true | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Log in to GHCR | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| tags: | | |
| type=raw,value=latest | |
| type=sha,prefix= | |
| - name: Build and push | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: nextflow | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=registry,ref=${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:buildcache | |
| cache-to: type=registry,ref=${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:buildcache,mode=max |