Deploy book with Python and R #2
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| name: Deploy book with Python and R | |
| on: | |
| workflow_run: | |
| workflows: ["Update Metadata"] | |
| types: | |
| - completed | |
| branches: | |
| - main | |
| # This job installs dependencies, builds the book, and deploys it to GitHub Pages | |
| # only runs if "Update Metadata" workflow is successful | |
| jobs: | |
| deploy-book: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pages: write | |
| id-token: write | |
| if: ${{ github.event.workflow_run.conclusion == 'success' }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install libcurl for R pak | |
| run: | | |
| sudo apt-get install -y --no-install-recommends libcurl4-openssl-dev | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| cache: pip | |
| - name: Install Python dependencies | |
| run: | | |
| pip install -r requirements.txt | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Cacheing for R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ hashFiles('**/install_dependencies.R') }} | |
| restore-keys: ${{ runner.os }}-r- | |
| - name: Install pak | |
| run: | | |
| install.packages("pak", repos = "https://r-lib.github.io/p/pak/devel/") | |
| shell: Rscript {0} | |
| - name: Install IRkernel and set it up | |
| run: | | |
| pak::pkg_install("IRkernel") | |
| IRkernel::installspec(name="ir", displayname="R") | |
| shell: Rscript {0} | |
| - name: Install R_requirements | |
| run: | | |
| Rscript install_dependencies.R | |
| - name: Log all available kernels | |
| run: | | |
| jupyter kernelspec list | |
| # only caches if set up in _config.yml with: | |
| # execute: | |
| # execute_notebooks: cache | |
| - name: Cache executed notebooks | |
| uses: actions/cache@v3 | |
| with: | |
| path: _build/.jupyter_cache | |
| key: jupyter-book-cache-${{ hashFiles('requirements.txt') }} | |
| - name: Build the book | |
| run: | | |
| jupyter-book build . | |
| - name: Upload book artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: "_build/html" | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |