Skip to content

Expand SPP blanks handling to include katharoseq, other controls #137

@AmandaBirmingham

Description

@AmandaBirmingham

There are number of functions in the SPP (e.g., Workflow.update_blanks_in_qiita, Workflow._compare_samples_against_qiita, Assay._replace_tube_ids_w_sample_names, and all the sif-related functionality) that assume that the SPP need handle only one kind of control (negative control extraction blanks). However, katharoseq positive controls would require detection and sif handling. The SampleContext section of v101 and later metag sample sheets support multiple control types, but the SPP would require some modification to be able to make use of this info. What priority this enhancement has depends almost entirely on when/whether we want to implement katharoseq as a production protocol.

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions