Skip to content

improve error when there are no files that passed human-filtering #108

Open
@antgonza

Description

@antgonza

If one of the projects has no reads passing human-filtering, the error is:

File "/home/qiita/miniconda3/envs/qp-knight-lab-processing-2022.03/bin/seqpro", line 33, in
sys.exit(load_entry_point('metapool', 'console_scripts', 'seqpro')())
File "/home/qiita/miniconda3/envs/qp-knight-lab-processing-2022.03/lib/python3.9/site-packages/click/core.py", line 1130, in __call__
return self.main(*args, **kwargs)
File "/home/qiita/miniconda3/envs/qp-knight-lab-processing-2022.03/lib/python3.9/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/home/qiita/miniconda3/envs/qp-knight-lab-processing-2022.03/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/qiita/miniconda3/envs/qp-knight-lab-processing-2022.03/lib/python3.9/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/home/qiita/qiita_spots/metagenomics_pooling_notebook/metapool/scripts/seqpro.py", line 52, in format_preparation_files
preps, us, uf = preparations_for_run(run_dir,
File "/home/qiita/qiita_spots/metagenomics_pooling_notebook/metapool/prep.py", line 425, in preparations_for_run
sample_files = fastq_files_found[project]
KeyError: '[project_name]'

replacing the actual project name for [project_name]

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions