From 57d1b146729223da9daa286a1cc75db6f2923746 Mon Sep 17 00:00:00 2001 From: Antonio Gonzalez Date: Mon, 29 Jan 2024 12:35:46 -0700 Subject: [PATCH 1/2] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 1756c7238..24ad9a78a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,7 +13,7 @@ Deployed on January 8th, 2024 * Workflow definitions can now use sample or preparation information columns/values to differentiate between them. * Updated the Adapter and host filtering plugin (qp-fastp-minimap2) to v2023.12 addressing a bug in adapter filtering; [more information](https://qiita.ucsd.edu/static/doc/html/processingdata/qp-fastp-minimap2.html). * Other fixes: [3334](https://github.com/qiita-spots/qiita/pull/3334), [3338](https://github.com/qiita-spots/qiita/pull/3338). Thank you @sjanssen2. -* The internal Sequence Processing Pipeline is now using the human pan-genome reference, together with the GRCh38 genome + PhiX and CHM13 genome for human host filtering. +* The internal Sequence Processing Pipeline is now using the human pan-genome reference, together with the GRCh38 genome + PhiX and T2T-CHM13v2.0 genome for human host filtering. Version 2023.10 From 627e0f0291c9ed21a7663260582cf1f6745e1fc6 Mon Sep 17 00:00:00 2001 From: Antonio Gonzalez Date: Fri, 26 Apr 2024 09:55:14 -0600 Subject: [PATCH 2/2] updating QiitaPrepTemp06182020.xlsx --- .../doc/source/checklist-for-ebi-ena-submission.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qiita_pet/support_files/doc/source/checklist-for-ebi-ena-submission.rst b/qiita_pet/support_files/doc/source/checklist-for-ebi-ena-submission.rst index 1d4191077..8b56b84a1 100644 --- a/qiita_pet/support_files/doc/source/checklist-for-ebi-ena-submission.rst +++ b/qiita_pet/support_files/doc/source/checklist-for-ebi-ena-submission.rst @@ -25,7 +25,7 @@ applies for studies in sandbox state that will become private or public. `https://www.ebi.ac.uk/ena/browser/view/[accession]` or the Qiita Study id: `https://qiita.ucsd.edu/public/?study_id=[study-id]` -`Here `__ you will find a document outlining these requirements, with examples, when possible. +`Here `__ you will find a document outlining these requirements, with examples, when possible. Note that submissions are time consuming and need full collaboration from the user. :red:`Do not wait until the last minute to request help.` In general, the best