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_toc.yml
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format: jb-book
root: notebooks/front_page
parts:
- caption: Aims
chapters:
- file: notebooks/00_introduction/01_primary.md
- file: notebooks/00_introduction/02_literature
- caption: Methods
chapters:
- file: notebooks/01_methods/01_overview
- file: notebooks/01_methods/02_recreation
- file: notebooks/01_methods/03_case_studies
- file: notebooks/01_methods/04_design
- file: notebooks/01_methods/05_prompt_engineering
- file: notebooks/01_methods/06_testing
- caption: Critical Care Model
chapters:
- file: notebooks/02_CCU/00_stress_report
sections:
- file: notebooks/02_CCU/00_stress/01_objectives
- file: notebooks/02_CCU/00_stress/02_logic
- file: notebooks/02_CCU/00_stress/03_data
- file: notebooks/02_CCU/00_stress/04_experimentation
- file: notebooks/02_CCU/00_stress/05_implementation
- file: notebooks/02_CCU/00_stress/06_code_access
- file: notebooks/02_CCU/01_model_stage1
sections:
- file: notebooks/02_CCU/01_model_stage1/01_ccu_model
- file: notebooks/02_CCU/01_model_stage1/02_auto_testing
- file: notebooks/02_CCU/01_model_stage1/03_manual_testing
- file: notebooks/02_CCU/01_model_stage1/04_run_script
- file: notebooks/02_CCU/01_model_stage1/05_interface
- file: notebooks/02_CCU/02_model_stage2
sections:
- file: notebooks/02_CCU/02_model_stage2/01_ccu_model_stage2
- file: notebooks/02_CCU/02_model_stage2/02_auto_testing_stage2
- file: notebooks/02_CCU/02_model_stage2/03_manual_testing_stage2
- file: notebooks/02_CCU/03_comparison
- file: notebooks/02_CCU/04_prompts_stage1
sections:
- file: notebooks/02_CCU/04_prompts_stage1/00_iteration
- file: notebooks/02_CCU/04_prompts_stage1/01_iteration
- file: notebooks/02_CCU/04_prompts_stage1/02_iteration
- file: notebooks/02_CCU/04_prompts_stage1/03_iteration
- file: notebooks/02_CCU/04_prompts_stage1/04_iteration
- file: notebooks/02_CCU/04_prompts_stage1/05_iteration
- file: notebooks/02_CCU/04_prompts_stage1/06_iteration
- file: notebooks/02_CCU/04_prompts_stage1/07_iteration
- file: notebooks/02_CCU/04_prompts_stage1/08_iteration
- file: notebooks/02_CCU/04_prompts_stage1/09_iteration
- file: notebooks/02_CCU/04_prompts_stage1/10_iteration
- file: notebooks/02_CCU/04_prompts_stage1/11_iteration
- file: notebooks/02_CCU/04_prompts_stage1/12_iteration
- file: notebooks/02_CCU/04_prompts_stage1/13_iteration
- file: notebooks/02_CCU/04_prompts_stage1/14_iteration
- file: notebooks/02_CCU/04_prompts_stage1/15_iteration
- file: notebooks/02_CCU/04_prompts_stage1/16_iteration
- file: notebooks/02_CCU/04_prompts_stage1/17_iteration
- file: notebooks/02_CCU/04_prompts_stage1/18_iteration
- file: notebooks/02_CCU/04_prompts_stage1/19_iteration
- file: notebooks/02_CCU/04_prompts_stage1/20_iteration
- file: notebooks/02_CCU/04_prompts_stage1/21_iteration
- file: notebooks/02_CCU/04_prompts_stage1/22_iteration
- file: notebooks/02_CCU/05_prompts_stage2
sections:
- file: notebooks/02_CCU/05_prompts_stage2/00_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/01_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/02_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/03_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/04_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/05_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/06_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/07_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/08_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/09_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/10_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/11_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/12_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/13_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/14_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/15_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/16_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/17_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/18_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/19_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/20_iteration_s2
- file: notebooks/02_CCU/05_prompts_stage2/21_iteration_s2
- caption: Stroke + Rehab model
chapters:
- file: notebooks/03_stroke/00_stress_report
sections:
- file: notebooks/03_stroke/00_stress/01_objectives
- file: notebooks/03_stroke/00_stress/02_logic
- file: notebooks/03_stroke/00_stress/03_data
- file: notebooks/03_stroke/00_stress/04_experimentation
- file: notebooks/03_stroke/00_stress/05_implementation
- file: notebooks/03_stroke/00_stress/06_code_access
- file: notebooks/03_stroke/01_model_stage1
sections:
- file: notebooks/03_stroke/01_model_stage1/01_asu_rehab_model
- file: notebooks/03_stroke/01_model_stage1/02_auto_testing
- file: notebooks/03_stroke/01_model_stage1/03_manual_testing
- file: notebooks/03_stroke/01_model_stage1/04_run_script
- file: notebooks/03_stroke/01_model_stage1/05_interface
- file: notebooks/03_stroke/02_model_stage2
sections:
- file: notebooks/03_stroke/02_model_stage2/01_asu_rehab_model
- file: notebooks/03_stroke/02_model_stage2/02_auto_testing_stage2
- file: notebooks/03_stroke/02_model_stage2/03_manual_testing_stage2
- file: notebooks/03_stroke/02_model_stage2/04_run_script_stage2
- file: notebooks/03_stroke/03_comparison
- file: notebooks/03_stroke/04_asu_rehab_prompts
sections:
- file: notebooks/03_stroke/04_prompts_stage1/01_iteration
- file: notebooks/03_stroke/04_prompts_stage1/02_iteration
- file: notebooks/03_stroke/04_prompts_stage1/03_iteration
- file: notebooks/03_stroke/04_prompts_stage1/04_iteration
- file: notebooks/03_stroke/04_prompts_stage1/05_iteration
- file: notebooks/03_stroke/04_prompts_stage1/06_iteration
- file: notebooks/03_stroke/04_prompts_stage1/07_iteration
- file: notebooks/03_stroke/04_prompts_stage1/08_iteration
- file: notebooks/03_stroke/04_prompts_stage1/09_iteration
- file: notebooks/03_stroke/04_prompts_stage1/10_iteration
- file: notebooks/03_stroke/04_prompts_stage1/11_iteration
- file: notebooks/03_stroke/04_prompts_stage1/12_iteration
- file: notebooks/03_stroke/04_prompts_stage1/13_iteration
- file: notebooks/03_stroke/04_prompts_stage1/14_iteration
- file: notebooks/03_stroke/04_prompts_stage1/15_iteration
- file: notebooks/03_stroke/04_prompts_stage1/16_iteration
- file: notebooks/03_stroke/04_prompts_stage1/17_iteration
- file: notebooks/03_stroke/04_prompts_stage1/18_iteration
- file: notebooks/03_stroke/04_prompts_stage1/19_iteration
- file: notebooks/03_stroke/04_prompts_stage1/20_iteration
- file: notebooks/03_stroke/04_prompts_stage1/21_iteration
- file: notebooks/03_stroke/04_prompts_stage1/22_iteration
- file: notebooks/03_stroke/04_prompts_stage1/23_iteration
- file: notebooks/03_stroke/04_prompts_stage1/24_iteration
- file: notebooks/03_stroke/04_prompts_stage1/25_iteration
- file: notebooks/03_stroke/04_prompts_stage1/26_iteration
- file: notebooks/03_stroke/04_prompts_stage1/27_iteration
- file: notebooks/03_stroke/04_prompts_stage1/28_iteration
- file: notebooks/03_stroke/04_prompts_stage1/29_iteration
- file: notebooks/03_stroke/04_prompts_stage1/30_iteration
- file: notebooks/03_stroke/04_prompts_stage1/31_iteration
- file: notebooks/03_stroke/05_asu_rehab_prompts_stage2
sections:
- file: notebooks/03_stroke/05_prompts_stage2/01_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/02_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/03_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/04_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/05_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/06_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/07_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/08_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/09_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/10_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/11_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/12_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/13_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/14_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/15_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/16_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/17_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/18_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/19_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/20_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/21_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/22_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/23_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/24_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/25_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/26_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/27_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/28_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/29_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/30_iteration_s2
- file: notebooks/03_stroke/05_prompts_stage2/31_iteration_s2
- caption: Results
chapters:
- file: notebooks/04_results/01_CCU/00_model_comparison
- file: notebooks/04_results/02_stroke/00_model_comparison