Update scipy to 1.16.3, numpy to 2.3.4 and matplotlib to 3.10.7 (#410)

* Update pyproject.toml

* Update environment.yml

* Update environment_mini.yml

* Update pyproject.toml

Author: jan-janssen

.ci_support/environment.yml

@@ -6,16 +6,16 @@ dependencies:
 - ase =3.26.0
 - coverage
 - dscribe =2.1.2
-- matplotlib-base =3.10.6
+- matplotlib-base =3.10.7
 - nglview =3.1.4
 - notebook
-- numpy =2.3.3
+- numpy =2.3.4
 - phonopy =2.43.2
 - plotly =6.3.1
 - pymatgen =2025.6.14
 - pyscal3 =3.3.0
 - scikit-learn =1.7.2
-- scipy =1.16.2
+- scipy =1.16.3
 - spglib =2.6.0
 - sqsgenerator =0.3
 - hatchling =1.27.0

.ci_support/environment_mini.yml

@@ -3,7 +3,7 @@ channels:
 dependencies:
 - ase =3.26.0
 - coverage
-- numpy =2.3.3
-- scipy =1.16.2
+- numpy =2.3.4
+- scipy =1.16.3
 - hatchling =1.27.0
 - hatch-vcs =0.4.0

pyproject.toml

@@ -26,8 +26,8 @@ classifiers = [
 ]
 dependencies = [
     "ase==3.26.0",
-    "numpy==2.3.3",
-    "scipy==1.16.2",
+    "numpy==2.3.4",
+    "scipy==1.16.3",
 ]
 dynamic = ["version"]
 
@@ -44,7 +44,7 @@ grainboundary = [
 ]
 pyscal = ["pyscal3==3.3.0"]
 nglview = ["nglview==3.1.4"]
-matplotlib = ["matplotlib==3.10.6"]
+matplotlib = ["matplotlib==3.10.7"]
 plotly = ["plotly==6.3.1"]
 clusters = ["scikit-learn==1.7.2"]
 symmetry = ["spglib==2.6.0"]