Merge pull request #40 from py-why/fix-package

Prep for first release: Rechecked dependencies and minor edits to notebooks

Author: emrekiciman

docs/notebooks/examples.ipynb

@@ -197,7 +197,7 @@
    },
    "outputs": [],
    "source": [
-    "domain_expertises = m.suggest_domain_expertises(\"causal mechanisms\", sea_ice_variables)"
+    "domain_expertises = m.suggest_domain_expertises(sea_ice_variables)"
    ]
   },
   {
@@ -219,7 +219,7 @@
    },
    "outputs": [],
    "source": [
-    "domain_experts = m.suggest_domain_experts(\"causal mechanisms\", sea_ice_variables)"
+    "domain_experts = m.suggest_domain_experts(sea_ice_variables)"
    ]
   },
   {
@@ -241,7 +241,7 @@
    },
    "outputs": [],
    "source": [
-    "parents = m.suggest_parents(\"causal mechanisms\", \"meterology\", \"relative_humidity\", sea_ice_variables)"
+    "parents = m.suggest_parents(domain_expertises[0], \"relative_humidity\", sea_ice_variables)"
    ]
   },
   {
@@ -263,7 +263,7 @@
    },
    "outputs": [],
    "source": [
-    "children = m.suggest_children(\"causal mechanisms\", \"meterology\", \"relative_humidity\", sea_ice_variables)"
+    "children = m.suggest_children(domain_expertises[0], \"relative_humidity\", sea_ice_variables)"
    ]
   },
   {
@@ -285,7 +285,7 @@
    },
    "outputs": [],
    "source": [
-    "pairwise_relationship = m.suggest_pairwise_relationship(\"meterology\", \"total_precipitation\", \"relative_humidity\")"
+    "pairwise_relationship = m.suggest_pairwise_relationship(domain_expertises[0], \"total_precipitation\", \"relative_humidity\")"
    ]
   },
   {
@@ -307,7 +307,7 @@
    },
    "outputs": [],
    "source": [
-    "confounders = m.suggest_confounders(treatment, outcome, sea_ice_variables, domain_expertises,\"causal mechanisms\")"
+    "confounders = m.suggest_confounders(treatment, outcome, sea_ice_variables, domain_expertises)"
    ]
   },
   {
@@ -330,7 +330,7 @@
    "outputs": [],
    "source": [
     "\"\"\"returns a dictionary with the how many times that edge was suggested\"\"\"\n",
-    "model_edges = m.suggest_relationships(treatment, outcome, sea_ice_variables, domain_expertises, \"causal mechanisms\", None, RelationshipStrategy.Pairwise)"
+    "model_edges = m.suggest_relationships(treatment, outcome, sea_ice_variables, domain_expertises, RelationshipStrategy.Pairwise)"
    ]
   },
   {
@@ -519,7 +519,7 @@
    },
    "outputs": [],
    "source": [
-    "critique = v.critique_graph(sea_ice_variables, model_edges, domain_expertises, \"causal mechanisms\", None, pairwise)"
+    "critique = v.critique_graph(sea_ice_variables, model_edges, domain_expertises, pairwise)"
    ]
   },
   {

docs/notebooks/walkthrough.ipynb

@@ -202,7 +202,7 @@
     "id": "45IJWbdQJ5YT"
    },
    "source": [
-    "### Identification support"
+    "## Identification support"
    ]
   },
   {
@@ -211,7 +211,7 @@
     "id": "wnorzUJMJ5YT"
    },
    "source": [
-    "## Instrumental variables"
+    "### Instrumental variables"
    ]
   },
   {