Added version 3.1

Author: icaoberg

2.11.1/vd

@@ -5,13 +5,22 @@ PACKAGE=visidata
 TOOL=vd
 DIRECTORY=$(dirname $0)
 
-PERSISTENT_FILE_STORAGE=/ocean
-if [ -d $PERSISTENT_FILE_STORAGE ]; then
-	OPTIONS="-B $PERSISTENT_FILE_STORAGE"
+STORAGES=(/ocean /local)
+
+OPTIONS=""
+for STORAGE in "${STORAGES[@]}"
+do
+        if [ -d "$STORAGE" ]; then
+                OPTIONS=$OPTIONS" -B $STORAGE"
+        fi
+done
+
+if id | grep -q hubmap && [ -d "/hive" ]; then
+        OPTIONS=$OPTIONS" -B /hive"
 fi
 
-if [ -d /local ]; then
-	OPTIONS=$OPTIONS" -B /local"
+if id | grep -q bil && [ -d "/bil" ]; then
+        OPTIONS=$OPTIONS" -B /bil"
 fi
 
 singularity exec $OPTIONS $DIRECTORY/singularity-$PACKAGE-$VERSION.sif $TOOL "$@"

3.1/Singularity

@@ -0,0 +1,27 @@
+Bootstrap: docker
+From: python:3.8-alpine
+
+%labels
+    AUTHOR icaoberg
+    EMAIL [email protected]
+    SUPPORT [email protected]
+    REPOSITORY http://gitub.com/pscedu/singularity-visidata
+    COPYRIGHT Copyright (c) 2024 Pittsburgh Supercomputing Center. All Rights Reserved.   
+    VERSION 3.1
+
+%environment
+    export TERM="xterm-256color"
+
+%post
+    apk update
+    apk add git man-pages mandoc
+    pip install requests python-dateutil wcwidth tabulate
+    mkdir -p /opt/visidata
+    git clone https://github.com/saulpw/visidata.git
+    cd visidata
+    git checkout tags/v3.1
+    sh -c 'yes | pip install -vvv .'
+    rm -rfv visidata
+
+%runscript
+    vd "$@"

3.1/build.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+# Copyright © 2021 Pittsburgh Supercomputing Center.
+# All Rights Reserved.
+
+IMAGE=singularity-visidata-3.1.sif
+DEFINITION=Singularity
+
+if [ -f $IMAGE ]; then
+	rm -fv $IMAGE
+fi
+
+apptainer build $IMAGE $DEFINITION
+
+if [ -f $IMAGE ]; then
+	exit 0
+else
+	exit 1
+fi

3.1/modulefile.lua

@@ -0,0 +1,34 @@
+--
+-- visidata 2.8 modulefile
+--
+-- "URL: https://www.psc.edu/resources/software"
+-- "Category: Other"
+-- "Description: VisiData is an interactive multitool for tabular data."
+
+whatis("Name: visidata")
+whatis("Version: 2.8")
+whatis("Category: Other")
+whatis("URL: https://www.psc.edu/resources/software")
+whatis("Description: VisiData is an interactive multitool for tabular data.")
+
+help([[
+VisiData is an interactive multitool for tabular data.
+
+To load the module type
+
+> module load visidata/2.8
+
+To unload the module type
+
+> module unload visidata/2.8
+
+Tools included in this module are
+
+* vd
+]])
+
+local package = "visidata"
+local version = "2.8"
+local base    = pathJoin("/opt/packages",package,version)
+prepend_path("PATH", base)
+prepend_path("MANPATH", base)

3.1/rbuild.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+
+# Copyright (c) 2024 Pittsburgh Supercomputing Center.
+# All Rights Reserved.
+
+IMAGE=singularity-visidata-3.1.sif
+DEFINITION=Singularity
+
+if [ -f $IMAGE ]; then
+	rm -fv $IMAGE
+fi
+
+module load SingularityCE/4.1.2.lua
+singularity build --remote $IMAGE $DEFINITION
+
+if [ -f $IMAGE ]; then
+	exit 0
+else
+	exit 1
+fi

3.1/test.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+set -x
+
+shopt -s expand_aliases
+
+DIRECTORY=$(pwd)
+alias vd='singularity exec "$DIRECTORY"/singularity-visidata-2.8.sif vd'
+
+tree .

3.1/vd

@@ -0,0 +1,26 @@
+#!/bin/bash
+
+VERSION=3.1
+PACKAGE=visidata
+TOOL=vd
+DIRECTORY=$(dirname $0)
+
+PERSISTENT_FILE_STORAGE=/ocean
+if [ -d $PERSISTENT_FILE_STORAGE ]; then
+	OPTIONS="-B $PERSISTENT_FILE_STORAGE"
+fi
+
+if [ -d /local ]; then
+	OPTIONS=$OPTIONS" -B /local"
+fi
+
+if id | grep -q "hubmap"; then
+	OPTIONS=$OPTIONS" -B /hive"
+fi
+
+if id | grep -q "bil"; then
+	OPTIONS=$OPTIONS" -B /bil"
+fi
+
+singularity exec $OPTIONS $DIRECTORY/singularity-$PACKAGE-$VERSION.sif $TOOL "$@"
+