Fix the rotation jump after panning #863
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| name: Coot CI Ubuntu | |
| on: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| build-ubuntu: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: wget test data | |
| run: wget -nv https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/data/greg-data.tar.gz | |
| - name: Untar test data | |
| run: cd src && tar xf ../greg-data.tar.gz && cd - | |
| - name: cache test data | |
| id: cache-coot-test-data | |
| uses: actions/cache@v4 | |
| with: | |
| path: src/greg-data | |
| key: coot-test-data | |
| - name: Cache coot dependencies | |
| id: cache-coot-dependencies-ubuntu | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/install/coot-Linux-ubuntu | |
| key: coot-deps-ubuntu-v2-${{ github.run_id }} | |
| restore-keys: | | |
| coot-deps-ubuntu-v2- | |
| coot-deps-ubuntu- | |
| - name: Delete any installed Coot libs | |
| run: if test -e /home/runner/install/coot-Linux-ubuntu/lib/libcoot-analysis.so ; then rm /home/runner/install/coot-Linux-ubuntu/lib/libcoot* /home/runner/install/coot-Linux-ubuntu/lib/libMoleculesToTrianglesCXXClasses* ; fi | |
| - name: Update apt-get | |
| run: sudo apt-get update | |
| - name: Install system dependencies | |
| run: sudo apt-get install cmake libdw-dev libncurses5-dev libgtk-4-dev libvorbis-dev libasound2-dev gobject-introspection libgirepository1.0-dev gir1.2-glib-2.0 libopenal-dev | |
| # is this needed? | |
| - name: Install linear algebra libraries | |
| run: sudo apt-get install libblas-dev liblapack-dev | |
| - name: Where are we? | |
| run: pwd | |
| - name: Run build-with-build-it-3-3 | |
| run: bash build-it-3-3 || echo done | |
| - name: Upload build logs | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-logs-public-html-package | |
| path: /home/runner/public_html | |
| retention-days: 3 | |
| # - name: check the clipper | |
| # run: find /home/runner/install/coot-Linux-ubuntu | |
| # - name: check the clipper libs | |
| # run: find /home/runner/install/coot-Linux-ubuntu/lib | |
| - name: Run autogen.sh | |
| run: bash autogen.sh | |
| - name: Set the PATH | |
| # the install dir is set specifically in build-it-3-3 when we in github actions | |
| run: echo /home/runner/install/coot-Linux-ubuntu/bin >> $GITHUB_PATH | |
| - name: Run configure | |
| env: | |
| CXXFLAGS: "-Wno-deprecated-declarations" | |
| # we echo done so that this returns a success status so that the logs are always uploaded | |
| run: > | |
| ./configure --prefix=/home/runner/install/coot-Linux-ubuntu | |
| --enable-silent-rules | |
| --with-fftw-prefix=/home/runner/install/coot-Linux-ubuntu | |
| --with-boost=/home/runner/install/coot-Linux-ubuntu | |
| --with-gemmi=/home/runner/install/coot-Linux-ubuntu | |
| --with-boost-libdir=/home/runner/install/coot-Linux-ubuntu/lib | |
| --with-backward --with-libdw --with-sound --disable-static | |
| SHELL=/bin/bash | |
| PYTHON=/home/runner/install/coot-Linux-ubuntu/bin/python3 | |
| PKG_CONFIG_PATH=/home/runner/install/coot-Linux-ubuntu/lib64/pkgconfig:/home/runner/install/coot-Linux-ubuntu/lib/pkgconfig:/home/runner/install/coot-Linux-ubuntu/lib/x86_64-linux-gnu/pkgconfig | |
| || echo done | |
| # great. configure now terminates correctly | |
| - name: compile it 1 | |
| id: compile-step-1 | |
| run: | | |
| make -j 4 -C auxil | |
| make -j 4 -C compat | |
| make -j 4 -C utils | |
| make -j 4 -C protein_db | |
| make -j 4 -C mini-mol | |
| make -j 4 -C geometry | |
| make -j 4 -C lidia-core | |
| make -j 4 -C coot-utils | |
| make -j 4 -C angles | |
| make -j 4 -C ccp4mg-utils | |
| make -j 4 -C db-main | |
| make -j 4 -C analysis | |
| make -j 4 -C cootaneer | |
| make -j 4 -C ideal | |
| make -j 4 -C ligand | |
| make -j 4 -C coords | |
| make -j 4 -C density-contour | |
| make -j 4 -C skeleton | |
| make -j 4 -C high-res | |
| make -j 4 -C build | |
| make -j 4 -C MoleculesToTriangles | |
| make -j 4 -C pli | |
| make -j 4 -C greg-tests | |
| make -j 4 -C cootilus | |
| make -j 4 -C pyrogen | |
| - name: compile it 2 | |
| id: compile-step-2 | |
| run: | | |
| make -j 4 -C api | |
| make -j 4 -C layla | |
| make -j 4 -C validation-graphs | |
| - name: Compile it 3 | |
| id: compile-step-3 | |
| run: make -j 4 | |
| # Yay. make not works! Let's install | |
| - name: Install with make install | |
| run: make install | |
| - name: diagnostics 1 | |
| run: find /home/runner/install/coot-Linux-ubuntu/lib > installed-lib-files.log | |
| - name: upload installed-lib-files.log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: upload-installed-lib-files-log-package | |
| path: ./installed-lib-files.log | |
| retention-days: 3 | |
| - name: diagnostics 2 | |
| run: find /home/runner/install/coot-Linux-ubuntu/include > installed-include-files.log | |
| - name: upload installed-include-files.log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: upload-installed-include-files-log-package | |
| path: ./installed-include-files.log | |
| retention-days: 3 | |
| - name: Upload config.log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: upload-config-log-package | |
| path: ./config.log | |
| retention-days: 3 | |
| - name: Does it run? | |
| run: cd src && ./coot-1 --self-test < /dev/null && cd - | |
| - name: Run make check | |
| run: make check | |
| - name: Run make dist | |
| run: make dist | |
| # - name: Run the Unit Python Tests | |
| # env: | |
| # COOT_REFMAC_LIB_DIR: /home/runner/work/coot/coot | |
| # COOT_TEST_DATA_DIR: ../src/greg-data | |
| # run: cd python-tests && ../src/coot-1 --no-graphics --script run_the_unit_tests.py && cd - | |
| - name: Upload binaries | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ubuntu-binaries-package | |
| path: /home/runner/install | |
| retention-days: 3 | |