updat citation #133
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| name: stcrpy installation | |
| on: [push] | |
| jobs: | |
| conda-pypi-install: | |
| name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| channel-priority: flexible | |
| show-channel-urls: true | |
| - name: Conda info | |
| shell: bash -el {0} | |
| run: | | |
| conda info | |
| conda config --show-sources | |
| - name: Conda list | |
| shell: pwsh | |
| run: conda list | |
| - name: Install dependencies | |
| shell: bash -el {0} | |
| run: | | |
| conda create -n env python==${{ matrix.python-version }} | |
| conda activate env | |
| pip install stcrpy | |
| pip list | |
| - name: Build ANARCI Models | |
| shell: bash -el {0} | |
| run: | | |
| conda activate env | |
| ANARCI --build_models | |
| - name: Install pymol | |
| shell: bash -el {0} | |
| run: | | |
| conda activate env | |
| conda install -c conda-forge pymol-open-source | |
| conda list | |
| - name: Test import | |
| shell: bash -el {0} | |
| run: | | |
| conda activate env | |
| python -c 'import stcrpy; stcrpy.fetch_TCRs("7pb2")' | |
| # - name: Test interaction profiling | |
| # shell: bash -el {0} | |
| # run: | | |
| # conda activate env | |
| # pip install plip | |
| # python -c 'import stcrpy; x=stcrpy.fetch_TCRs("7pb2"); print(x[0].profile_peptide_interactions())' |