PAD based influence on score?

[ALGW71]

NEED to roll back this fix:
cda2d9d

#MODELRUNNER.P#
                    ### DEBUG ONLY ###
                    # if src_tokens[batch_no, eos_position - 1] == "<PAD>":
                    #     print(src_tokens[batch_no, :])
                    #     print(pred_tokens[batch_no, :])


# Test CODE
add = "GGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRSTDSSSWYYYYYG"
add2 = "QSLEESGGDLVKPGASLTLTCTASGFSFNSRNYMCWVRQAPGKGLEWIACIDGGSSGSTYYASWAKGRFTISKTSSTTVTLQMTSLTAADTATCFCARVSTYYTFAYGTRSDYYGMDLWGPGTLVTVS"
scores = []
last = None

for i in range(len(add)):
    seqs = [
        "GGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRSTDSSSWYYYYYG",
        "GGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSG" + add[:i] + "GSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRSTDSSSWYYYYYG",           
        "GGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSG" + add2[:i] + "GSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRSTDSSSWYYYYYG",
        "GGSLRLSCAASGFTFSSY" + add2[:i] + "AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRSTDSSSWYYYYYG",
        "GGSLRLSCAASGFTFSSY" + add2[:i] + "AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRSTDSSSWYYYYYG"[i:],
        "GGSLRLSCAASGFTFSSYAMSWVRQAPGKG" + add[:i] + "LEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRSTDSSSWYYYYYG"]

    res = model.number(seqs)

    if last != res[0] and len(scores) > 0:
        print("Number change...")
        print(last)
        print(res[0])
        break

    last = res[0]