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inoushujun/EDTA (press backspace or delete to remove)Hi I am wondering if there is any error here. I have done TE predictions for like 8 genomes (around 20MB) in the same
family and normally find a high number of TEs and find that this specific species does ...
keith-harrison
- Opened yesterday
- #550
Hi, I encountered this error when testing: `#########################################################
Extensive de-novo TE Annotator (EDTA) v2.2.2
Shujun Ou (shujun.ou.1@gmail.com)
######################################################### ...
lancelot-bio
- Opened yesterday
- #549
Hi,
Im running Extensive de-novo TE Annotator (EDTA) v2.2.2 through SLURM cluster, using the following resources and
command:
#SBATCH --cpus-per-task=32 #SBATCH --mem=350G #SBATCH --nodes=1
EDTA.pl ...
marco91sol
- Opened 2 days ago
- #548
Hi @oushujun
I am getting an InvalidArchiveError( Error with archive /miniforge3/pkgs/r-base-4.4.3-h9c32bc2_0.conda. You probably
need to delete and re-download or re-create this file. Message was:\n\nfailed ...
sanyalab
- Opened 3 days ago
- #547
Hello @oushujun
I am annotating a grass species, that belongs to the Poales order. It is the first in its clade to be sequenced and
annotated, therefore has no fully sequenced and annotated sister species. ...
- Opened 8 days ago
- #546
Hi, Thanks for this great piece of software.
I am using EDTA for multiple genomes with various sizes. For two of the largest genomes, the initial allocated time (4
days) was not enough, and the job ran ...
amnghn
- Opened 15 days ago
- #544
I submitted 24 EDTA tasks to identify transposons in 24 genomes, but only 2 tasks successfully ran. The remaining tasks
encountered an error: Error: The RMblast engine is not installed in RepeatMasker! ...
Xoey0314
- 2
- Opened 16 days ago
- #543
Well, TE classifications are MESSY! All sort of naming conventions and alias are floating around.
I created the TE_Sequence_Ontology.txt file in EDTA/bin/ to collect all these names, and use the Sequence ...
enhancement
oushujun
- Opened 17 days ago
- #542
Hi @oushujun,
Very cool TE annotation tool.
One said now EDTA is at version2, i was introduced to use it for my algae genomes, i installed it by conda, i tested it,
it worked ok, i got output files as ...
PengfeiInTuebingen
- 1
- Opened 21 days ago
- #541
Hello, I was running EDTA on a house fly genome and I get this error. It is a housefly genome. I installed EDTA using
conda.
#########################################################
Extensive de-novo ...
bbista
- 15
- Opened on Jan 27
- #540
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