From 8c0eb4d69bd67f3e47de791d0a4e6f15d8c9238a Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 09:17:23 -0700 Subject: [PATCH 01/24] adding updates --- chunks/secrets.md | 8 +++++++- chunks/starter_template.md | 9 ++++++--- chunks/token.md | 2 +- 3 files changed, 14 insertions(+), 5 deletions(-) diff --git a/chunks/secrets.md b/chunks/secrets.md index dec3030..67a7379 100644 --- a/chunks/secrets.md +++ b/chunks/secrets.md @@ -16,4 +16,10 @@
-[Click here to see GitHub documentation on setting repository secrets.](https://docs.github.com/en/codespaces/managing-codespaces-for-your-organization/managing-development-environment-secrets-for-your-repository-or-organization#adding-secrets-for-a-repository) + + + Click here to see GitHub documentation on setting repository secrets. + diff --git a/chunks/starter_template.md b/chunks/starter_template.md index 98edaa2..76ed0ab 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -1,6 +1,7 @@ ## Log into GitHub or make a GitHub profile if you are new to GitHub - Go to https://github.com/ + Go to + github.com Sign up for GitHub if you haven't already - it's free! @@ -8,9 +9,11 @@ ## Create a repository from the [{TEMPLATE_NAME}]({TEMPLATE_URL}) template - Go to {TEMPLATE_URL} + Go to + {TEMPLATE_URL} - In the upper right, _click on_:
Use this template
+ In the upper right, _click on_:
+ Use this template
Make sure you don't click on the green "Code" button instead! diff --git a/chunks/token.md b/chunks/token.md index 435f059..bf6b39f 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -20,7 +20,7 @@ Underneath **Select Scopes**, *check both* **repo** and **workflow** (all check boxes in those sections) - Click:
Generate token
+ Click:
Generate token
Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private From 99f817e4e19780a5004b825baca2a7d5442fb651 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 09:27:39 -0700 Subject: [PATCH 02/24] trying link in different way for target_blank --- chunks/starter_template.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/chunks/starter_template.md b/chunks/starter_template.md index 76ed0ab..4c4b22c 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -1,5 +1,7 @@ ## Log into GitHub or make a GitHub profile if you are new to GitHub +Go to [github](href="https://github.com){:target="_blank"} + Go to github.com From b5fcdc51f1bf153376d7577b2e9114f834737652 Mon Sep 17 00:00:00 2001 From: Padmashri Saravanan <65482193+padmashris@users.noreply.github.com> Date: Tue, 13 Jan 2026 11:45:52 -0500 Subject: [PATCH 03/24] test change --- CONTRIBUTING.Qmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CONTRIBUTING.Qmd b/CONTRIBUTING.Qmd index be1aad8..670c4bf 100644 --- a/CONTRIBUTING.Qmd +++ b/CONTRIBUTING.Qmd @@ -8,7 +8,7 @@ The [Contributor Covenant Code of Conduct can be found here](https://github.com/ To make a new cheatsheet, you can create a Rmd or md in the top of the repository. GitHub Actions will automatically render the cheatsheet as a PNG which will be saved to the `docs` folder. -There are two style options: `css/ITN_style.css` and `css/OTTR_style.css`. +There are two style options: `css/ITN_style.css` and `css/OTTR_style.css`. Specify this in the yaml header: @@ -83,4 +83,4 @@ To get icons you can use the following: ## Adding cheatsheets to main page - Add information about the cheatsheet (and links) to the `gallery.yml` file -- Check render of index.Qmd \ No newline at end of file +- Check render of index.Qmd From 614e829f8f2eacc7992e35e727d1ee737309d202 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 11:43:49 -0700 Subject: [PATCH 04/24] fix typo in link test --- chunks/starter_template.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/chunks/starter_template.md b/chunks/starter_template.md index 4c4b22c..c1f9723 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -1,6 +1,6 @@ ## Log into GitHub or make a GitHub profile if you are new to GitHub -Go to [github](href="https://github.com){:target="_blank"} +Go to [github](https://github.com){:target="_blank"} Go to github.com From 5761f1bd1a3a4bc9649dad4498d4bec0dc8d7b00 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 12:47:50 -0700 Subject: [PATCH 05/24] adding some more tests --- chunks/starter_template.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/chunks/starter_template.md b/chunks/starter_template.md index c1f9723..542235f 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -1,6 +1,11 @@ + + + + ## Log into GitHub or make a GitHub profile if you are new to GitHub -Go to [github](https://github.com){:target="_blank"} +Go to [github](https://github.com){target="_blank"} +Go to [github](https://github.com) Go to github.com @@ -11,6 +16,7 @@ Go to [github](https://github.com){:target="_blank"} ## Create a repository from the [{TEMPLATE_NAME}]({TEMPLATE_URL}) template + Go to {TEMPLATE_URL} Go to {TEMPLATE_URL} From 94296f1121638b0e7e8ed09084930701cbad939a Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 12:52:42 -0700 Subject: [PATCH 06/24] trying new way more fully --- chunks/starter_template.md | 11 ++--------- 1 file changed, 2 insertions(+), 9 deletions(-) diff --git a/chunks/starter_template.md b/chunks/starter_template.md index 542235f..20f32c3 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -1,14 +1,10 @@ - + ## Log into GitHub or make a GitHub profile if you are new to GitHub -Go to [github](https://github.com){target="_blank"} -Go to [github](https://github.com) - - Go to - github.com + Go to [github](https://github.com) Sign up for GitHub if you haven't already - it's free! @@ -17,9 +13,6 @@ Go to [github](https://github.com) ## Create a repository from the [{TEMPLATE_NAME}]({TEMPLATE_URL}) template Go to {TEMPLATE_URL} - Go to - {TEMPLATE_URL} - In the upper right, _click on_:
Use this template
From 1519d550dd76ee7b62674d7603eb5553c5b9cf36 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 13:19:33 -0700 Subject: [PATCH 07/24] getting rid of links in buttons --- chunks/starter_template.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/chunks/starter_template.md b/chunks/starter_template.md index 20f32c3..719df9f 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -10,11 +10,11 @@ Make sure you are logged into GitHub - check at https://github.com/ - you should see your profile in the upper right corner -## Create a repository from the [{TEMPLATE_NAME}]({TEMPLATE_URL}) template +## Create a repository from the {TEMPLATE_NAME} template - Go to {TEMPLATE_URL} - In the upper right, _click on_:
- Use this template
+ Go to [{TEMPLATE_NAME}]({TEMPLATE_URL}) + + In the upper right, _click on_:
Use this template
Make sure you don't click on the green "Code" button instead! From c351680d75224c312c4268ff7764a9ff9eb619be Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 13:32:48 -0700 Subject: [PATCH 08/24] updating based on notes from Allissa --- chunks/token.md | 16 +++++++++------- 1 file changed, 9 insertions(+), 7 deletions(-) diff --git a/chunks/token.md b/chunks/token.md index bf6b39f..71c1918 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -2,28 +2,30 @@ Click on your **profile photo** in the upper right `r config::get("profile")` - Go to **Settings** `r config::get("settings")` + Scroll down to **Settings** `r config::get("settings")` - Go to **Developer Settings** in the lower left side navigation `r config::get("settings")` + Scroll down on the left side menu to **Developer Settings** in the lower left side navigation `r config::get("settings")` - Click on **Personal access tokens** `r config::get("token")` + Scroll down on the left side menu to **Personal access tokens** `r config::get("token")` Select **Tokens (classic)** - Click gray "Generate new token" button + Click gray "Generate new token" button (upper right) Select **Generate new token (classic)** - Confirm your access + Confirm your access if you have two factor authentication set up (you will be asked to submit a code or something similar) - Name your token GH_PAT + Name your token GH_PAT in the "Note" section - Underneath **Select Scopes**, *check both* **repo** and **workflow** (all check boxes in those sections) + Underneath **Select Scopes** (where the check boxes are), check **repo** (so everything under it is checked) and **workflow** Click:
Generate token
Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private + +Note that your token will expire based on the date that you set, you will have to complete this process again when your token expires. GitHub will let you know as you will get an error about credentials.
[Click here to see GitHub documentation on creating a personal access token.](https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens) From 3b897cec8f03156bf360c970faa89d4bbc620fe9 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 13:34:21 -0700 Subject: [PATCH 09/24] more about token expirations --- chunks/token.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/chunks/token.md b/chunks/token.md index 71c1918..2d321b4 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -18,6 +18,8 @@ Name your token GH_PAT in the "Note" section +Note that your token will expire based on the date that you set in the Expiration section. You will have to complete this process again when your token expires. GitHub will let you know as you will get an error about credentials. It is a good idea to use the default settings. + Underneath **Select Scopes** (where the check boxes are), check **repo** (so everything under it is checked) and **workflow** Click:
Generate token
@@ -25,7 +27,6 @@ Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private -Note that your token will expire based on the date that you set, you will have to complete this process again when your token expires. GitHub will let you know as you will get an error about credentials.
[Click here to see GitHub documentation on creating a personal access token.](https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens) From d6a91a854ddd19fb9f1c467999a67aae099ac7c7 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 13:38:18 -0700 Subject: [PATCH 10/24] updatind actions based on notes --- chunks/enable_actions.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/chunks/enable_actions.md b/chunks/enable_actions.md index 742c063..7bf1ecf 100644 --- a/chunks/enable_actions.md +++ b/chunks/enable_actions.md @@ -2,11 +2,13 @@ In your OTTR repository, go to **Settings** in the top navigation tabs `r config::get("settings")` - Go to **Actions** (General) in the side navigation `r config::get("actions")` + Go to **Actions** in the menu on the left side `r config::get("actions")` - Under **Workflow permissions** + Select **General** just below **Actions** -1. Select **Read and write permissions** + Scroll down to **Workflow permissions** + +1. Ensure **Read and write permissions** is selected 2. Check **Allow GitHub Actions to create and approve pull requests** From d73469bda5080825079dee7d65fc5cd325ca44f6 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 13:48:38 -0700 Subject: [PATCH 11/24] adding gray for token button --- chunks/token.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/chunks/token.md b/chunks/token.md index 2d321b4..bcda955 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -4,13 +4,13 @@ Scroll down to **Settings** `r config::get("settings")` - Scroll down on the left side menu to **Developer Settings** in the lower left side navigation `r config::get("settings")` + Scroll down in the menu on the left side to **Developer Settings** in the lower left side navigation `r config::get("settings")` - Scroll down on the left side menu to **Personal access tokens** `r config::get("token")` + Scroll down in the left side menu on the left side to **Personal access tokens** `r config::get("token")` Select **Tokens (classic)** - Click gray "Generate new token" button (upper right) + Click very lightly gray button that says
< "Generate new token"
(upper right) Select **Generate new token (classic)** @@ -22,7 +22,7 @@ Note that your token will expire based on the date that you set in the Expiratio Underneath **Select Scopes** (where the check boxes are), check **repo** (so everything under it is checked) and **workflow** - Click:
Generate token
+ Click:
Generate token
Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private From 05a7ab750018d51e297c2133998a3049d9cc7526 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 13:58:27 -0700 Subject: [PATCH 12/24] fixing button --- chunks/token.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/chunks/token.md b/chunks/token.md index bcda955..f9c99a6 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -10,7 +10,7 @@ Select **Tokens (classic)** - Click very lightly gray button that says
< "Generate new token"
(upper right) + Click very light gray button that says
Generate new token
(upper right) Select **Generate new token (classic)** From bd951ba249600106e66f741e9408ac5cdf078915 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Tue, 13 Jan 2026 14:07:20 -0700 Subject: [PATCH 13/24] fixing button style --- css/OTTR_style.css | 29 +++++++++++++++++++++++------ 1 file changed, 23 insertions(+), 6 deletions(-) diff --git a/css/OTTR_style.css b/css/OTTR_style.css index a4217df..ad41573 100644 --- a/css/OTTR_style.css +++ b/css/OTTR_style.css @@ -34,14 +34,13 @@ input[type="checkbox"] { /*------------- png boxes button style---------------- */ + .png_button { - position: absolute; /*----placement of button--*/ - top: 20px; /*----placement of button--*/ - right: 5%; /*----placement of button--*/ - border: 4px solid #black; border-radius: 8px; - background: lightgray; - color: black; + border: 1px solid #black; + background: #lightgray; + color: black !important; + box-shadow: 0 12px 16px 0 rgba(0,0,0,0.24), 0 17px 50px 0 rgba(0,0,0,0.19); padding: 8px 16px; text-align: center; text-decoration: none; @@ -51,6 +50,24 @@ input[type="checkbox"] { transition-duration: 0.4s; cursor: pointer; } +/*old button code +/*--.png_button { +/* position: absolute; /*----placement of button--*/ + /* top: 20px; /*----placement of button--*/ +/* right: 5%; /*----placement of button--*/ +/* border: 4px solid #black; +/* border-radius: 8px; +/* background: lightgray; + /* color: black; + /* padding: 8px 16px; +/* text-align: center; + text-decoration: none; + display: inline-block; + font-size: 16px; + margin: 4px 2px; + transition-duration: 0.4s; + cursor: pointer; +} */ /*------------- timestamp style---------------- */ .time { From b9d0b2cb2456b6b93bff40e5f140aeaadfb7a617 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:04:43 -0700 Subject: [PATCH 14/24] fixing button styles --- chunks/token.md | 2 +- css/OTTR_style.css | 28 +++++++++++++++------------- 2 files changed, 16 insertions(+), 14 deletions(-) diff --git a/chunks/token.md b/chunks/token.md index f9c99a6..4285371 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -10,7 +10,7 @@ Select **Tokens (classic)** - Click very light gray button that says
Generate new token
(upper right) + Click very light gray button that says
Generate new token
(upper right) Select **Generate new token (classic)** diff --git a/css/OTTR_style.css b/css/OTTR_style.css index ad41573..2edc793 100644 --- a/css/OTTR_style.css +++ b/css/OTTR_style.css @@ -35,7 +35,7 @@ input[type="checkbox"] { /*------------- png boxes button style---------------- */ -.png_button { +.github_gray_button { border-radius: 8px; border: 1px solid #black; background: #lightgray; @@ -50,24 +50,26 @@ input[type="checkbox"] { transition-duration: 0.4s; cursor: pointer; } -/*old button code -/*--.png_button { -/* position: absolute; /*----placement of button--*/ - /* top: 20px; /*----placement of button--*/ -/* right: 5%; /*----placement of button--*/ -/* border: 4px solid #black; -/* border-radius: 8px; -/* background: lightgray; - /* color: black; - /* padding: 8px 16px; -/* text-align: center; + +.png_button { + position: absolute; /*----placement of button--*/ + top: 20px; /*----placement of button--*/ + right: 5%; /*----placement of button--*/ + border: 4px solid #black; + border-radius: 8px; + background: lightgray; + color: black; + padding: 8px 16px; + text-align: center; text-decoration: none; display: inline-block; font-size: 16px; margin: 4px 2px; transition-duration: 0.4s; cursor: pointer; -} */ +} + + /*------------- timestamp style---------------- */ .time { From 96144ef73e76509ae8e7cc2694c1a66c59e66a68 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:16:01 -0700 Subject: [PATCH 15/24] add triangle to button --- chunks/token.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/chunks/token.md b/chunks/token.md index 4285371..d2d92c3 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -10,7 +10,7 @@ Select **Tokens (classic)** - Click very light gray button that says
Generate new token
(upper right) + Click very light gray button that says
Generate new token ▾
(upper right) Select **Generate new token (classic)** From 0f825d8010956d38d9decccf17ae63dea284b64c Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:17:20 -0700 Subject: [PATCH 16/24] adding darker gray --- css/OTTR_style.css | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/css/OTTR_style.css b/css/OTTR_style.css index 2edc793..7c88ee2 100644 --- a/css/OTTR_style.css +++ b/css/OTTR_style.css @@ -38,7 +38,7 @@ input[type="checkbox"] { .github_gray_button { border-radius: 8px; border: 1px solid #black; - background: #lightgray; + background: #D0D0D0; color: black !important; box-shadow: 0 12px 16px 0 rgba(0,0,0,0.24), 0 17px 50px 0 rgba(0,0,0,0.19); padding: 8px 16px; From 0a8b8387586247ca1d240b6a22ae23db159ded82 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:20:29 -0700 Subject: [PATCH 17/24] adding lighter gray --- css/OTTR_style.css | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/css/OTTR_style.css b/css/OTTR_style.css index 7c88ee2..d7c7f2a 100644 --- a/css/OTTR_style.css +++ b/css/OTTR_style.css @@ -38,7 +38,7 @@ input[type="checkbox"] { .github_gray_button { border-radius: 8px; border: 1px solid #black; - background: #D0D0D0; + background: #E8E8E8; color: black !important; box-shadow: 0 12px 16px 0 rgba(0,0,0,0.24), 0 17px 50px 0 rgba(0,0,0,0.19); padding: 8px 16px; From 6efcd397f2f7317d36f41f451d1ec6c270eeec3e Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:24:35 -0700 Subject: [PATCH 18/24] remove curser from github buttons --- css/OTTR_style.css | 2 -- 1 file changed, 2 deletions(-) diff --git a/css/OTTR_style.css b/css/OTTR_style.css index d7c7f2a..fbff45b 100644 --- a/css/OTTR_style.css +++ b/css/OTTR_style.css @@ -29,7 +29,6 @@ input[type="checkbox"] { font-size: 16px; margin: 4px 2px; transition-duration: 0.4s; - cursor: pointer; } /*------------- png boxes button style---------------- */ @@ -48,7 +47,6 @@ input[type="checkbox"] { font-size: 16px; margin: 4px 2px; transition-duration: 0.4s; - cursor: pointer; } .png_button { From 291f641e9b96a2fbe9048c7febf3e9bccea74840 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:27:12 -0700 Subject: [PATCH 19/24] moving base info to header md --- chunks/create_ottr_header.md | 3 +++ chunks/starter_template.md | 4 +--- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/chunks/create_ottr_header.md b/chunks/create_ottr_header.md index a7843e7..a892c14 100644 --- a/chunks/create_ottr_header.md +++ b/chunks/create_ottr_header.md @@ -6,3 +6,6 @@
Download cheatsheet
**Last updated: `r format(Sys.time(), '%B %d, %Y')`**
+ + + \ No newline at end of file diff --git a/chunks/starter_template.md b/chunks/starter_template.md index 719df9f..75fb462 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -1,10 +1,8 @@ - - ## Log into GitHub or make a GitHub profile if you are new to GitHub - Go to [github](https://github.com) + Go to [github.com)](https://github.com) Sign up for GitHub if you haven't already - it's free! From 17b646190e977c6d404e64ca4656ba4dacefff3a Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:31:19 -0700 Subject: [PATCH 20/24] fixing typos I introduced --- chunks/create_ottr_header.md | 2 +- chunks/starter_template.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/chunks/create_ottr_header.md b/chunks/create_ottr_header.md index a892c14..193e7a4 100644 --- a/chunks/create_ottr_header.md +++ b/chunks/create_ottr_header.md @@ -8,4 +8,4 @@
**Last updated: `r format(Sys.time(), '%B %d, %Y')`**
- \ No newline at end of file + diff --git a/chunks/starter_template.md b/chunks/starter_template.md index 75fb462..1395499 100644 --- a/chunks/starter_template.md +++ b/chunks/starter_template.md @@ -2,7 +2,7 @@ ## Log into GitHub or make a GitHub profile if you are new to GitHub - Go to [github.com)](https://github.com) + Go to [github.com](https://github.com) Sign up for GitHub if you haven't already - it's free! From 2322b3407186705b5424381f215307c080bc0809 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 10:37:00 -0700 Subject: [PATCH 21/24] adding Padma and Allissa --- ottr_course.Rmd | 2 +- ottr_quarto_website.Rmd | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/ottr_course.Rmd b/ottr_course.Rmd index ce3ebf5..e0c07f7 100644 --- a/ottr_course.Rmd +++ b/ottr_course.Rmd @@ -48,6 +48,6 @@ ottrpal::borrow_chapter( ottrpal::borrow_chapter( doc_path = "chunks/create_ottr_footer.md", tag_replacement = list( - "{AUTHORS}" = "Kate Isaac wrote the content and created the original styling, Carrie Wright did the css styling and Carrie Wright and Candace Savonen did the publishing engineering for the cheatsheet." + "{AUTHORS}" = "Kate Isaac wrote the content and created the original styling, Carrie Wright did the css styling and Carrie Wright and Candace Savonen did the publishing engineering for the cheatsheet. Padmashri Saravanan and Allissa Dillman from [BioDataSage](https://www.biodatasage.com/) worked with Carrie Wright to review and improve the cheatsheet." )) ``` diff --git a/ottr_quarto_website.Rmd b/ottr_quarto_website.Rmd index 8fcbe67..1941630 100644 --- a/ottr_quarto_website.Rmd +++ b/ottr_quarto_website.Rmd @@ -48,6 +48,6 @@ ottrpal::borrow_chapter( ottrpal::borrow_chapter( doc_path = "chunks/create_ottr_footer.md", tag_replacement = list( - "{AUTHORS}" = "Kate Isaac wrote the content and created the original styling, Carrie Wright did the css styling and Carrie Wright and Candace Savonen did the publishing engineering for the cheatsheet." + "{AUTHORS}" = "Kate Isaac wrote the content and created the original styling, Carrie Wright did the css styling and Carrie Wright and Candace Savonen did the publishing engineering for the cheatsheet. Padmashri Saravanan and Allissa Dillman from [BioDataSage](https://www.biodatasage.com/) worked with Carrie Wright to review and improve the cheatsheet." )) ``` From 0e8e370c22c6dafeed3627a693a6f2d001f26c3d Mon Sep 17 00:00:00 2001 From: Padmashri Saravanan Date: Thu, 15 Jan 2026 10:59:20 -0500 Subject: [PATCH 22/24] add note for securely saving PAT --- chunks/token.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/chunks/token.md b/chunks/token.md index d2d92c3..ef0177b 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -24,7 +24,7 @@ Note that your token will expire based on the date that you set in the Expiratio Click:
Generate token
- Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private + Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private. **Please note that you cannot retrieve this personal access token again later from GitHub**
From 681a5f071016501e7da7d07cf6c30647665b60eb Mon Sep 17 00:00:00 2001 From: Carrie Wright <23014755+carriewright11@users.noreply.github.com> Date: Fri, 16 Jan 2026 12:35:30 -0500 Subject: [PATCH 23/24] Update chunks/token.md --- chunks/token.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/chunks/token.md b/chunks/token.md index ef0177b..18b9e9c 100644 --- a/chunks/token.md +++ b/chunks/token.md @@ -24,7 +24,7 @@ Note that your token will expire based on the date that you set in the Expiratio Click:
Generate token
- Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private. **Please note that you cannot retrieve this personal access token again later from GitHub** + Copy the **personal access token** `r config::get("copy")` and save somewhere safe and private. **Please note that you cannot retrieve this personal access token again later from GitHub.** If you lose it, you just need to complete this process again.
From e80c0858a3040013d4090867752bae3ac79b8ffb Mon Sep 17 00:00:00 2001 From: Carrie Wright <23014755+carriewright11@users.noreply.github.com> Date: Fri, 16 Jan 2026 12:35:51 -0500 Subject: [PATCH 24/24] Update chunks/secrets.md --- chunks/secrets.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/chunks/secrets.md b/chunks/secrets.md index 67a7379..275f977 100644 --- a/chunks/secrets.md +++ b/chunks/secrets.md @@ -2,6 +2,8 @@ In your OTTR repository, go to **Settings** in the top navigation tabs `r config::get("settings")` +Note that this is different from your profile settings where you made your token. + Go to **Secrets and variables** in the side navigation `r config::get("secrets")` Click on **Actions**