nf-hub-modules

All

22 repositories

rclone
Public
A nextflow pipeline wrapping rclone
Nextflow
•
MIT License
•0•0•0•0•Updated Nov 14, 2023Nov 14, 2023
tb-profiler
Public
Nextflow wrapper for tb-profiler
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•1•1•2•0•Updated Sep 13, 2023Sep 13, 2023
spotyping
Public
Nextflow wrapper for spotyping
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•1•1•2•0•Updated Aug 2, 2023Aug 2, 2023
gzip
Public
Nextflow wrapper for gunzip
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•1•0•2•0•Updated Feb 11, 2022Feb 11, 2022
kvarq
Public
Nextflow wrapper for kvarq
bioinformatics nextflow work-in-progress nextflow-process nextflow-hub
Nextflow
•
MIT License
•1•0•0•0•Updated Feb 11, 2022Feb 11, 2022
rd-analyzer
Public
Nextflow wrapper for rd-analyzer
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•1•0•0•0•Updated Oct 19, 2020Oct 19, 2020
download_sra
Public
0•0•0•0•Updated Oct 18, 2020Oct 18, 2020
mtbseq
Public
Nextflow wrapper for mtbseq
work-in-progress
Nextflow
•
MIT License
•0•0•1•0•Updated Oct 8, 2020Oct 8, 2020
gatk
Public
beta-release
Nextflow
•
MIT License
•0•0•0•0•Updated Sep 20, 2020Sep 20, 2020
samtools
Public
beta-release
Nextflow
•
MIT License
•0•0•0•0•Updated Sep 19, 2020Sep 19, 2020
picard
Public
beta-release
Nextflow
•
MIT License
•0•0•0•0•Updated Sep 19, 2020Sep 19, 2020
bwa
Public
beta-release
Nextflow
•
MIT License
•0•0•0•0•Updated Sep 19, 2020Sep 19, 2020
minimal_server_setup_for_nextflow
Public
Bare minimum setup for using nextflow
setup bioinformatics nextflow
0•1•4•0•Updated Sep 18, 2020Sep 18, 2020
nextflow_hub_process
Public template
A template for nextflow-hub process
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•1•1•8•0•Updated Sep 18, 2020Sep 18, 2020
fastqc
Public
Nextflow wrapper for fastqc
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•0•0•1•0•Updated Sep 11, 2020Sep 11, 2020
prokka
Public
Nextflow wrapper for prokka
bioinformatics nextflow nextflow-process nextflow-hub
Nextflow
•
MIT License
•1•0•0•0•Updated Sep 5, 2020Sep 5, 2020
snippy
Public
Nextflow wrapper for snippy
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•2•0•1•0•Updated Aug 31, 2020Aug 31, 2020
multiqc
Public
Nextflow wrapper for multiqc
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•0•0•0•0•Updated Aug 28, 2020Aug 28, 2020
spades
Public
Nextflow wrapper for spades
bioinformatics nextflow nextflow-process nextflow-hub
Nextflow
•
MIT License
•1•0•0•0•Updated Aug 20, 2020Aug 20, 2020
trimmomatic
Public
Nextflow wrapper for trimmomatic
bioinformatics nextflow-process nextflow-hub nextflow
Nextflow
•
MIT License
•3•0•1•0•Updated Jul 28, 2020Jul 28, 2020
quast
Public
Nextflow wrapper for quast
bioinformatics nextflow work-in-progress nextflow-process nextflow-hub
Nextflow
•
MIT License
•1•0•0•0•Updated Jun 16, 2020Jun 16, 2020
mykrobe
Public
Nextflow wrapper for mykrobe
bioinformatics nextflow work-in-progress nextflow-process nextflow-hub
Nextflow
•
MIT License
•1•0•0•0•Updated Jun 11, 2020Jun 11, 2020