Repositories list

• genpipes_in_a_container

  Public
  Shell

  •1•5•6•1•Updated Jan 21, 2025Jan 21, 2025

• monitor

  Public
  C3G Run Processing monitor (for reporting)

  Groovy

  •0•0•0•1•Updated Jan 21, 2025Jan 21, 2025

• freezeman

  Public
  Freezer management & sample tracking system

  Python

  •1•7•0•4•Updated Jan 21, 2025Jan 21, 2025

• mhcut-browser

  Public
  Data browser web application for the MHcut project.

  JavaScript

  •

  GNU General Public License v3.0

  •1•0•0•13•Updated Jan 20, 2025Jan 20, 2025

• bento_provisioning

  Public
  Shell

  •0•0•0•1•Updated Jan 17, 2025Jan 17, 2025

• MoH_Automation

  Public
  Automation for MoH. It includes capabilities for file transfer, tracking, and genpipes, initiation.

  Python

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• MultiQC_c3g

  Public
  MultiQC plugin specific to GenPipes and C3G reports

  HTML

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• triton

  Public
  TypeScript

  •0•0•4•3•Updated Jan 15, 2025Jan 15, 2025

• cit_scripts

  Public
  CIT scripts for GenPipes

  Shell

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• GenPipes_Docs

  Public
  GenPipes Read the Docs repository

  Mermaid

  •5•21•6•0•Updated Dec 23, 2024Dec 23, 2024

• elastic-HPC

  Public
  HCL

  •1•1•0•0•Updated Dec 20, 2024Dec 20, 2024

• ops_tools

  Public
  Operational tools for production or hacking

  Python

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• CoVSeQ_tools

  Public
  R

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• project_tracking

  Public
  Python

  •

  GNU General Public License v3.0

  •0•3•2•0•Updated Nov 20, 2024Nov 20, 2024

• web-app-template

  Public template
  0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• project_tracking_cli

  Public
  Python

  •

  GNU General Public License v3.0

  •0•1•1•0•Updated Nov 12, 2024Nov 12, 2024

• Template_Convertor

  Public
  MOH template conversion project

  Python

  •0•1•1•1•Updated Nov 12, 2024Nov 12, 2024

• PARPAL

  Public
  GZ - Kuzmin website

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• pipes_stats

  Public
  JavaScript

  •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• puppet-magic_castle

  Public
  Puppet Environment repo for Magic Castle - https://github.com/ComputeCanada/magic_castle

  Puppet

  •

  MIT License

  •21•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• magic_castle

  Public
  Terraform modules to replicate the HPC user experience in the cloud

  HCL

  •

  MIT License

  •40•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• puppet-module-globus

  Public
  Globus deployment for MC on SD4H

  Ruby

  •

  Other

  •7•0•1•0•Updated Apr 3, 2024Apr 3, 2024

• epivar-browser

  Public
  Source code for the EpiVar browser, a web application to search for eQTL/epigenetic signal-associated variants and merge bigWig tracks by genotype.

  genomicsepigeneticsgenomics-visualization+ 1epigenomics

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •0•2•0•0•Updated Mar 1, 2024Mar 1, 2024

• bw-merge-window

  Public
  Command-line utility for merging a window of a set of bigWigs, inspired by the previous C3G bigWigMergePlus tool.

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jan 19, 2024Jan 19, 2024

• moh_data_wrangling

  Public
  0•0•0•0•Updated Dec 8, 2023Dec 8, 2023

• grants

  Public
  Application to manage grants

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Oct 6, 2023Oct 6, 2023

• CINECA

  Public
  Scripts to wrangle CINECA data into the Bento Platform

  Python

  •0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

• d-path

  Public
  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 10, 2023Aug 10, 2023

• bacterial-genome-synchronizer

  Public
  JavaScript

  •0•0•0•8•Updated Apr 30, 2023Apr 30, 2023

• arc

  Public
  0•0•1•0•Updated Feb 23, 2023Feb 23, 2023